Wall clock time and date at job start Mon Mar 30 2020 03:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39868 * 125.89404 * 2 1 4 4 C 1.35320 * 107.92085 * 180.14214 * 3 2 1 5 5 C 1.50700 * 126.12923 * 179.90964 * 4 3 2 6 6 N 1.46495 * 109.47251 * 94.63083 * 5 4 3 7 7 C 1.36934 * 120.00313 * 84.02863 * 6 5 4 8 8 H 1.08005 * 119.99723 * 344.47220 * 7 6 5 9 9 C 1.38805 * 120.00101 * 164.74592 * 7 6 5 10 10 N 1.31621 * 120.00438 * 356.88365 * 9 7 6 11 11 Si 1.86801 * 120.00129 * 176.88241 * 9 7 6 12 12 H 1.48506 * 109.47079 * 59.99748 * 11 9 7 13 13 H 1.48500 * 109.47581 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47313 * 300.00286 * 11 9 7 15 15 C 1.46507 * 119.99864 * 264.02194 * 6 5 4 16 16 C 1.52994 * 109.47083 * 357.17704 * 15 6 5 17 17 C 1.52999 * 109.46841 * 117.17294 * 15 6 5 18 18 N 1.34945 * 107.74350 * 359.63868 * 4 3 2 19 19 C 1.46500 * 126.03873 * 180.20966 * 18 4 3 20 20 N 1.30829 * 125.90481 * 179.73750 * 2 1 3 21 21 H 1.09002 * 109.46933 * 270.23211 * 1 2 3 22 22 H 1.08993 * 109.46934 * 30.23851 * 1 2 3 23 23 H 1.09004 * 109.46756 * 150.23626 * 1 2 3 24 24 H 1.08004 * 126.04354 * 0.02562 * 3 2 1 25 25 H 1.09002 * 109.46921 * 334.62276 * 5 4 3 26 26 H 1.09002 * 109.46801 * 214.63322 * 5 4 3 27 27 H 0.96996 * 120.00341 * 180.02562 * 10 9 7 28 28 H 1.08995 * 109.47483 * 237.17442 * 15 6 5 29 29 H 1.09011 * 109.47528 * 59.99479 * 16 15 6 30 30 H 1.09000 * 109.47399 * 179.97438 * 16 15 6 31 31 H 1.08997 * 109.47281 * 299.99927 * 16 15 6 32 32 H 1.09003 * 109.47270 * 63.97456 * 17 15 6 33 33 H 1.09000 * 109.47550 * 183.97383 * 17 15 6 34 34 H 1.09001 * 109.47472 * 303.97645 * 17 15 6 35 35 H 1.08997 * 109.47874 * 90.00216 * 19 18 4 36 36 H 1.09001 * 109.46804 * 210.00268 * 19 18 4 37 37 H 1.08998 * 109.47114 * 329.99651 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0032 5 6 4.8350 1.5991 -0.0063 6 7 5.2994 1.7952 1.3692 7 6 6.1134 0.8637 1.9564 8 1 6.2124 -0.1190 1.5194 9 6 6.8066 1.1805 3.1165 10 7 6.7301 2.3950 3.6181 11 14 7.8483 -0.1168 3.9659 12 1 8.9039 -0.5912 3.0353 13 1 8.4816 0.4699 5.1742 14 1 6.9882 -1.2604 4.3630 15 6 4.8931 2.9881 2.1165 16 6 4.0508 3.8925 1.2147 17 6 4.0667 2.5700 3.3343 18 7 3.6088 -0.6339 0.0030 19 6 4.7900 -1.5005 0.0066 20 7 2.2743 -1.0597 0.0049 21 1 -0.3633 0.0042 1.0277 22 1 -0.3633 0.8878 -0.5175 23 1 -0.3633 -0.8921 -0.5102 24 1 1.9922 2.1599 0.0004 25 1 4.5838 2.5643 -0.4461 26 1 5.6236 1.1271 -0.5923 27 1 7.2148 2.6164 4.4285 28 1 5.7796 3.5290 2.4474 29 1 3.1641 3.3515 0.8837 30 1 3.7481 4.7797 1.7707 31 1 4.6395 4.1903 0.3471 32 1 4.6882 1.9840 4.0114 33 1 3.7051 3.4591 3.8508 34 1 3.2179 1.9687 3.0084 35 1 5.0833 -1.7109 1.0350 36 1 4.5563 -2.4353 -0.5030 37 1 5.6092 -1.0003 -0.5098 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089184780.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:15 Heat of formation + Delta-G solvation = 88.935777 kcal Electronic energy + Delta-G solvation = -17926.423898 eV Core-core repulsion = 15320.089325 eV Total energy + Delta-G solvation = -2606.334573 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.03047 -38.46042 -34.84249 -33.82201 -32.68107 -31.02790 -30.08661 -28.01960 -26.90725 -26.02374 -24.89363 -21.36720 -20.99037 -19.99227 -18.52100 -17.49215 -16.97306 -16.20770 -15.74032 -15.34072 -15.13422 -14.92647 -14.32837 -14.19987 -13.84314 -13.45165 -13.31881 -13.18417 -13.00613 -12.96298 -12.78640 -12.68630 -12.57962 -12.22878 -12.09294 -11.52478 -11.50606 -11.31941 -11.21826 -10.40463 -9.87960 -9.25539 -8.78482 -7.56220 -5.17802 1.09361 1.46527 1.48388 1.52555 1.80963 1.98727 2.54402 3.39450 3.74306 3.77023 4.02007 4.28452 4.35974 4.40840 4.60609 4.61957 4.66224 4.72189 4.80005 4.86689 4.91575 5.03612 5.10500 5.11674 5.12296 5.22155 5.36721 5.45901 5.53319 5.63440 5.97172 6.10237 6.14539 6.30281 6.53222 6.96755 7.29386 7.97416 8.35696 9.27233 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.009611 C = 0.007932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.630335 B = 2912.644812 C = 3529.116496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.056 3.944 3 C -0.294 4.294 4 C 0.087 3.913 5 C 0.196 3.804 6 N -0.594 5.594 7 C -0.246 4.246 8 H 0.078 0.922 9 C -0.050 4.050 10 N -0.922 5.922 11 Si 0.953 3.047 12 H -0.274 1.274 13 H -0.298 1.298 14 H -0.292 1.292 15 C 0.177 3.823 16 C -0.158 4.158 17 C -0.119 4.119 18 N -0.376 5.376 19 C 0.105 3.895 20 N -0.348 5.348 21 H 0.077 0.923 22 H 0.096 0.904 23 H 0.075 0.925 24 H 0.152 0.848 25 H 0.097 0.903 26 H 0.058 0.942 27 H 0.242 0.758 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.042 0.958 33 H 0.031 0.969 34 H 0.005 0.995 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.941 -0.980 -7.818 10.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.109 4.109 3 C -0.324 4.324 4 C -0.044 4.044 5 C 0.067 3.933 6 N -0.315 5.315 7 C -0.376 4.376 8 H 0.096 0.904 9 C -0.244 4.244 10 N -0.571 5.571 11 Si 0.784 3.216 12 H -0.200 1.200 13 H -0.224 1.224 14 H -0.219 1.219 15 C 0.072 3.928 16 C -0.215 4.215 17 C -0.178 4.178 18 N -0.158 5.158 19 C -0.036 4.036 20 N -0.172 5.172 21 H 0.096 0.904 22 H 0.115 0.885 23 H 0.094 0.906 24 H 0.169 0.831 25 H 0.115 0.885 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.024 0.976 35 H 0.079 0.921 36 H 0.116 0.884 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.640 -2.278 -7.660 10.390 hybrid contribution 0.684 0.000 1.087 1.284 sum -5.956 -2.278 -6.573 9.158 Atomic orbital electron populations 1.20220 0.84505 1.04128 1.03293 1.22876 0.98359 0.90652 0.99033 1.21280 0.91194 0.99883 1.20006 1.22896 0.99516 0.84818 0.97188 1.19704 0.89656 0.96662 0.87283 1.44358 1.54184 1.23087 1.09895 1.19582 1.17385 0.93741 1.06941 0.90430 1.25434 1.01129 0.97867 0.99921 1.70147 1.45521 1.18594 1.22833 0.85543 0.79252 0.78797 0.78050 1.19990 1.22423 1.21895 1.20816 0.96203 0.86612 0.89163 1.22273 0.99877 0.99473 0.99883 1.22059 0.97221 0.98384 1.00108 1.48487 1.05216 1.05059 1.56992 1.21917 0.83962 0.94787 1.02979 1.77065 0.87372 1.24229 1.28496 0.90426 0.88541 0.90649 0.83052 0.88463 0.92402 0.94781 0.90077 0.92602 0.92200 0.92442 0.93954 0.95005 0.97593 0.92149 0.88413 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.52 10.45 71.24 0.74 -0.78 16 2 C 0.06 1.95 7.22 43.10 0.31 2.26 16 3 C -0.29 -10.52 9.92 21.99 0.22 -10.30 16 4 C 0.09 3.35 6.46 41.41 0.27 3.62 16 5 C 0.20 7.45 5.23 85.63 0.45 7.90 16 6 N -0.59 -27.39 2.68 -682.35 -1.83 -29.22 16 7 C -0.25 -12.47 9.42 84.03 0.79 -11.68 16 8 H 0.08 3.73 5.40 -2.91 -0.02 3.72 16 9 C -0.05 -2.62 4.56 84.86 0.39 -2.24 16 10 N -0.92 -50.73 8.20 21.65 0.18 -50.55 16 11 Si 0.95 43.83 29.55 68.60 2.03 45.86 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 14 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 15 C 0.18 8.08 2.87 44.99 0.13 8.21 16 16 C -0.16 -5.60 7.86 71.98 0.57 -5.04 16 17 C -0.12 -5.66 8.67 71.98 0.62 -5.04 16 18 N -0.38 -14.49 4.01 -356.04 -1.43 -15.92 16 19 C 0.10 3.39 10.08 127.77 1.29 4.67 16 20 N -0.35 -13.57 12.57 -47.39 -0.60 -14.17 16 21 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 22 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 24 H 0.15 4.80 6.57 -2.91 -0.02 4.78 16 25 H 0.10 3.30 5.46 -2.39 -0.01 3.29 16 26 H 0.06 2.11 7.19 -2.39 -0.02 2.10 16 27 H 0.24 13.26 8.31 -92.71 -0.77 12.49 16 28 H 0.08 4.29 5.77 -2.39 -0.01 4.28 16 29 H 0.06 1.89 5.23 -2.38 -0.01 1.88 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 1.88 7.07 -2.39 -0.02 1.86 16 32 H 0.04 2.29 5.66 -2.39 -0.01 2.27 16 33 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.06 2.14 7.22 -2.39 -0.02 2.12 16 36 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.10 2.86 7.07 -2.39 -0.02 2.84 16 Total: -1.00 -62.06 289.00 5.19 -56.88 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 1.06 Total: 15.53 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: 5.77 Total: -8.41 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -3.67 Total: -109.86 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -62.06 5.19 -56.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089184780.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.812 kcal (2) G-P(sol) polarization free energy of solvation -62.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds