Wall clock time and date at job start Mon Mar 30 2020 03:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46539 * 2 1 4 4 N 1.30841 * 125.89830 * 270.29649 * 3 2 1 5 5 N 1.40077 * 108.20617 * 180.15213 * 4 3 2 6 6 C 1.46506 * 126.03887 * 179.85844 * 5 4 3 7 7 C 1.34948 * 107.92447 * 359.59262 * 5 4 3 8 8 C 1.35308 * 107.74625 * 0.23925 * 7 5 4 9 9 C 1.50699 * 126.04160 * 179.97438 * 8 7 5 10 10 N 1.46903 * 109.47308 * 260.03117 * 9 8 7 11 11 C 1.46899 * 111.00347 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.46986 * 324.99443 * 11 10 9 13 13 C 1.52999 * 109.47275 * 84.99645 * 11 10 9 14 14 C 1.50702 * 109.47196 * 204.99780 * 11 10 9 15 15 H 1.08007 * 119.99790 * 359.97438 * 14 11 10 16 16 C 1.37874 * 119.99859 * 179.97438 * 14 11 10 17 17 N 1.31513 * 119.99600 * 179.97438 * 16 14 11 18 18 Si 1.86800 * 120.00093 * 0.02562 * 16 14 11 19 19 H 1.48494 * 109.47243 * 89.99749 * 18 16 14 20 20 H 1.48507 * 109.46848 * 209.99616 * 18 16 14 21 21 H 1.48495 * 109.47224 * 329.99477 * 18 16 14 22 22 H 1.09000 * 109.47616 * 300.00172 * 1 2 3 23 23 H 1.09003 * 109.47414 * 60.00319 * 1 2 3 24 24 H 1.09003 * 109.47200 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47177 * 239.99995 * 2 1 3 26 26 H 1.08999 * 109.46979 * 119.99522 * 2 1 3 27 27 H 1.09001 * 109.47060 * 269.69144 * 6 5 4 28 28 H 1.09004 * 109.47073 * 29.68633 * 6 5 4 29 29 H 1.09000 * 109.47212 * 149.68716 * 6 5 4 30 30 H 1.08007 * 126.12452 * 180.22769 * 7 5 4 31 31 H 1.09000 * 109.46891 * 20.02409 * 9 8 7 32 32 H 1.08998 * 109.47526 * 140.02824 * 9 8 7 33 33 H 1.00895 * 111.00190 * 56.03930 * 10 9 8 34 34 H 1.08992 * 109.47113 * 60.00299 * 13 11 10 35 35 H 1.08998 * 109.46763 * 180.02562 * 13 11 10 36 36 H 1.09006 * 109.46907 * 300.00161 * 13 11 10 37 37 H 0.97005 * 119.99644 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2827 2.1461 -1.0599 5 7 2.7328 3.4024 -0.6342 6 6 3.1261 4.5162 -1.5009 7 6 2.7346 3.4076 0.7153 8 6 2.3055 2.1942 1.1329 9 6 2.1503 1.7535 2.5657 10 7 3.3097 0.9405 2.9564 11 6 3.1930 0.4926 4.3505 12 1 2.7072 1.2687 4.9420 13 6 2.3586 -0.7886 4.4065 14 6 4.5668 0.2222 4.9080 15 1 5.4393 0.3680 4.2884 16 6 4.7097 -0.2114 6.2090 17 7 5.9085 -0.4479 6.6953 18 14 3.2005 -0.4643 7.2804 19 1 2.7155 -1.8598 7.1308 20 1 3.5540 -0.2126 8.7006 21 1 2.1325 0.4786 6.8615 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 4.1926 4.4502 -1.7159 28 1 2.5638 4.4670 -2.4334 29 1 2.9143 5.4600 -0.9983 30 1 3.0264 4.2325 1.3485 31 1 2.0873 2.6300 3.2106 32 1 1.2407 1.1616 2.6673 33 1 4.1711 1.4451 2.8099 34 1 2.8444 -1.5646 3.8151 35 1 2.2716 -1.1206 5.4410 36 1 1.3649 -0.5929 4.0033 37 1 6.0090 -0.7533 7.6105 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162721255.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:43 Heat of formation + Delta-G solvation = 74.032522 kcal Electronic energy + Delta-G solvation = -16901.074717 eV Core-core repulsion = 14294.093891 eV Total energy + Delta-G solvation = -2606.980826 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.05431 -36.19734 -34.49887 -32.65866 -31.60837 -30.71545 -28.71939 -26.64553 -25.16752 -23.97915 -22.82071 -20.42561 -19.79734 -19.13274 -16.92249 -16.28994 -15.45403 -15.22159 -14.53242 -14.14010 -13.81517 -13.63362 -13.43420 -12.97186 -12.84616 -12.73471 -12.40814 -12.09345 -11.86317 -11.74618 -11.27979 -11.02185 -10.83831 -10.80458 -10.54250 -10.19113 -10.03156 -9.47970 -9.02097 -8.98748 -8.57742 -8.12463 -7.37558 -6.06869 -4.06257 2.05902 2.64880 2.99651 3.29554 3.38548 3.41175 4.41357 4.53777 4.94560 5.02224 5.07869 5.25740 5.28909 5.33612 5.38445 5.54347 5.62411 5.69385 5.80845 6.03175 6.11821 6.19948 6.38402 6.39217 6.44699 6.52438 6.60298 6.78199 6.86870 6.94331 7.18368 7.44971 7.63164 7.94670 8.02367 8.43551 8.67632 8.98826 9.55841 11.06252 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.031580 B = 0.005981 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.412540 B = 4680.241268 C = 5209.327542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.046 4.046 3 C 0.102 3.898 4 N -0.307 5.307 5 N -0.385 5.385 6 C 0.107 3.893 7 C 0.051 3.949 8 C -0.216 4.216 9 C 0.134 3.866 10 N -0.673 5.673 11 C 0.181 3.819 12 H -0.001 1.001 13 C -0.137 4.137 14 C -0.517 4.517 15 H 0.078 0.922 16 C 0.070 3.930 17 N -0.900 5.900 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.299 1.299 21 H -0.268 1.268 22 H 0.056 0.944 23 H 0.050 0.950 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.169 0.831 31 H 0.024 0.976 32 H 0.070 0.930 33 H 0.338 0.662 34 H 0.058 0.942 35 H 0.035 0.965 36 H 0.026 0.974 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.431 7.627 -12.881 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.085 4.085 3 C -0.065 4.065 4 N -0.130 5.130 5 N -0.167 5.167 6 C -0.035 4.035 7 C -0.095 4.095 8 C -0.227 4.227 9 C 0.003 3.997 10 N -0.304 5.304 11 C 0.072 3.928 12 H 0.017 0.983 13 C -0.195 4.195 14 C -0.556 4.556 15 H 0.096 0.904 16 C -0.131 4.131 17 N -0.538 5.538 18 Si 0.722 3.278 19 H -0.205 1.205 20 H -0.227 1.227 21 H -0.194 1.194 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.117 0.883 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.186 0.814 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.156 0.844 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.045 0.955 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.517 7.179 -14.348 18.655 hybrid contribution -0.376 0.806 2.023 2.210 sum -9.893 7.985 -12.325 17.707 Atomic orbital electron populations 1.21680 0.94860 1.01643 1.01766 1.19991 0.95446 0.89015 1.04067 1.22165 0.97737 0.96640 0.89963 1.77234 1.21863 0.90877 1.22982 1.48249 1.52374 1.11457 1.04618 1.21743 1.01092 0.85813 0.94822 1.22312 1.02424 0.99977 0.84798 1.20072 1.12223 0.93678 0.96735 1.20173 0.95924 0.95042 0.88538 1.60528 1.03258 1.42269 1.24358 1.19530 0.96420 0.92212 0.84614 0.98309 1.22064 0.97772 1.00543 0.99072 1.21122 0.91430 1.45480 0.97521 0.90440 1.24937 0.95746 0.94765 0.97698 1.69899 1.21825 1.46176 1.15946 0.86795 0.83472 0.78765 0.78751 1.20501 1.22669 1.19358 0.92528 0.93116 0.92176 0.91034 0.88343 0.91081 0.89739 0.89876 0.81372 0.95829 0.91182 0.84361 0.92333 0.94651 0.95493 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.89 37.16 0.37 -1.34 16 2 C -0.05 -0.65 6.31 -27.88 -0.18 -0.83 16 3 C 0.10 1.64 6.47 -82.40 -0.53 1.10 16 4 N -0.31 -4.97 12.58 33.67 0.42 -4.54 16 5 N -0.38 -5.25 4.01 -68.16 -0.27 -5.52 16 6 C 0.11 0.91 11.47 59.85 0.69 1.60 16 7 C 0.05 0.70 11.40 -17.23 -0.20 0.51 16 8 C -0.22 -3.45 5.61 -105.06 -0.59 -4.04 16 9 C 0.13 2.31 5.59 -4.97 -0.03 2.28 16 10 N -0.67 -13.80 6.29 -109.22 -0.69 -14.48 16 11 C 0.18 4.28 2.19 -68.86 -0.15 4.13 16 12 H 0.00 -0.01 6.86 -51.93 -0.36 -0.37 16 13 C -0.14 -3.04 8.89 37.16 0.33 -2.71 16 14 C -0.52 -14.48 9.17 -34.44 -0.32 -14.80 16 15 H 0.08 2.35 7.86 -52.48 -0.41 1.94 16 16 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 17 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 18 Si 0.89 22.09 24.37 -169.99 -4.14 17.94 16 19 H -0.28 -6.73 6.87 56.52 0.39 -6.34 16 20 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 21 H -0.27 -6.39 6.53 56.52 0.37 -6.02 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.10 1.52 7.96 -51.93 -0.41 1.11 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.17 1.84 8.06 -52.48 -0.42 1.42 16 31 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 32 H 0.07 1.19 7.44 -51.93 -0.39 0.81 16 33 H 0.34 7.13 8.21 -39.29 -0.32 6.81 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.04 0.81 3.27 -51.93 -0.17 0.64 16 36 H 0.03 0.51 7.45 -51.93 -0.39 0.13 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 302.79 15.07 4.56 4.56 Total: -1.00 -32.24 302.79 -5.90 -38.14 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.85 Total: 2.82 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -0.70 Total: -12.16 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: 0.24 Total: -51.31 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.14 Total: 17.94 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.24 -5.90 -38.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162721255.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.168 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds