Wall clock time and date at job start Mon Mar 30 2020 03:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46539 * 2 1 4 4 N 1.30841 * 125.89830 * 270.29649 * 3 2 1 5 5 N 1.40077 * 108.20617 * 180.15213 * 4 3 2 6 6 C 1.46506 * 126.03887 * 179.85844 * 5 4 3 7 7 C 1.34948 * 107.92447 * 359.59262 * 5 4 3 8 8 C 1.35308 * 107.74625 * 0.23925 * 7 5 4 9 9 C 1.50699 * 126.04160 * 179.97438 * 8 7 5 10 10 N 1.46903 * 109.47308 * 260.03117 * 9 8 7 11 11 C 1.46899 * 111.00347 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.46986 * 324.99443 * 11 10 9 13 13 C 1.52999 * 109.47275 * 84.99645 * 11 10 9 14 14 C 1.50702 * 109.47196 * 204.99780 * 11 10 9 15 15 H 1.08007 * 119.99790 * 359.97438 * 14 11 10 16 16 C 1.37874 * 119.99859 * 179.97438 * 14 11 10 17 17 N 1.31513 * 119.99600 * 179.97438 * 16 14 11 18 18 Si 1.86800 * 120.00093 * 0.02562 * 16 14 11 19 19 H 1.48494 * 109.47243 * 89.99749 * 18 16 14 20 20 H 1.48507 * 109.46848 * 209.99616 * 18 16 14 21 21 H 1.48495 * 109.47224 * 329.99477 * 18 16 14 22 22 H 1.09000 * 109.47616 * 300.00172 * 1 2 3 23 23 H 1.09003 * 109.47414 * 60.00319 * 1 2 3 24 24 H 1.09003 * 109.47200 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47177 * 239.99995 * 2 1 3 26 26 H 1.08999 * 109.46979 * 119.99522 * 2 1 3 27 27 H 1.09001 * 109.47060 * 269.69144 * 6 5 4 28 28 H 1.09004 * 109.47073 * 29.68633 * 6 5 4 29 29 H 1.09000 * 109.47212 * 149.68716 * 6 5 4 30 30 H 1.08007 * 126.12452 * 180.22769 * 7 5 4 31 31 H 1.09000 * 109.46891 * 20.02409 * 9 8 7 32 32 H 1.08998 * 109.47526 * 140.02824 * 9 8 7 33 33 H 1.00895 * 111.00190 * 56.03930 * 10 9 8 34 34 H 1.08992 * 109.47113 * 60.00299 * 13 11 10 35 35 H 1.08998 * 109.46763 * 180.02562 * 13 11 10 36 36 H 1.09006 * 109.46907 * 300.00161 * 13 11 10 37 37 H 0.97005 * 119.99644 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2827 2.1461 -1.0599 5 7 2.7328 3.4024 -0.6342 6 6 3.1261 4.5162 -1.5009 7 6 2.7346 3.4076 0.7153 8 6 2.3055 2.1942 1.1329 9 6 2.1503 1.7535 2.5657 10 7 3.3097 0.9405 2.9564 11 6 3.1930 0.4926 4.3505 12 1 2.7072 1.2687 4.9420 13 6 2.3586 -0.7886 4.4065 14 6 4.5668 0.2222 4.9080 15 1 5.4393 0.3680 4.2884 16 6 4.7097 -0.2114 6.2090 17 7 5.9085 -0.4479 6.6953 18 14 3.2005 -0.4643 7.2804 19 1 2.7155 -1.8598 7.1308 20 1 3.5540 -0.2126 8.7006 21 1 2.1325 0.4786 6.8615 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 4.1926 4.4502 -1.7159 28 1 2.5638 4.4670 -2.4334 29 1 2.9143 5.4600 -0.9983 30 1 3.0264 4.2325 1.3485 31 1 2.0873 2.6300 3.2106 32 1 1.2407 1.1616 2.6673 33 1 4.1711 1.4451 2.8099 34 1 2.8444 -1.5646 3.8151 35 1 2.2716 -1.1206 5.4410 36 1 1.3649 -0.5929 4.0033 37 1 6.0090 -0.7533 7.6105 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162721255.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:43 Heat of formation + Delta-G solvation = 50.959527 kcal Electronic energy + Delta-G solvation = -16902.075237 eV Core-core repulsion = 14294.093891 eV Total energy + Delta-G solvation = -2607.981347 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.15637 -37.87266 -35.62856 -34.53195 -32.84540 -32.10018 -30.14031 -27.74136 -27.07241 -25.34659 -23.90693 -21.70170 -21.51103 -20.28781 -18.83805 -17.61299 -17.00314 -16.38761 -15.81284 -15.49106 -15.29713 -15.02367 -14.93499 -14.41959 -14.00508 -13.92483 -13.81297 -13.40771 -13.29709 -12.79905 -12.69944 -12.65030 -12.43955 -12.12920 -11.97320 -11.93865 -11.42807 -11.32205 -10.99744 -10.73648 -10.11349 -9.29567 -8.98666 -8.28032 -6.32319 0.97403 1.34766 1.38524 1.49558 1.72764 1.80804 2.34402 3.07794 3.56708 3.80985 3.94963 4.19491 4.31897 4.35682 4.45347 4.55231 4.56968 4.61815 4.69427 4.74515 4.80848 4.87088 4.92514 4.99090 5.09728 5.12174 5.26918 5.35731 5.38132 5.56278 5.70114 5.80025 6.04968 6.20671 6.57721 6.72214 6.82740 6.89546 7.34706 8.88622 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.031580 B = 0.005981 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.412540 B = 4680.241268 C = 5209.327542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.046 4.046 3 C 0.089 3.911 4 N -0.335 5.335 5 N -0.382 5.382 6 C 0.096 3.904 7 C 0.061 3.939 8 C -0.245 4.245 9 C 0.142 3.858 10 N -0.674 5.674 11 C 0.186 3.814 12 H -0.002 1.002 13 C -0.133 4.133 14 C -0.522 4.522 15 H 0.037 0.963 16 C 0.013 3.987 17 N -0.949 5.949 18 Si 0.954 3.046 19 H -0.266 1.266 20 H -0.300 1.300 21 H -0.248 1.248 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.199 0.801 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.331 0.669 34 H 0.049 0.951 35 H 0.030 0.970 36 H 0.059 0.941 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.501 8.642 -13.314 19.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.085 4.085 3 C -0.077 4.077 4 N -0.158 5.158 5 N -0.164 5.164 6 C -0.044 4.044 7 C -0.086 4.086 8 C -0.257 4.257 9 C 0.012 3.988 10 N -0.305 5.305 11 C 0.077 3.923 12 H 0.015 0.985 13 C -0.191 4.191 14 C -0.560 4.560 15 H 0.055 0.945 16 C -0.184 4.184 17 N -0.589 5.589 18 Si 0.781 3.219 19 H -0.192 1.192 20 H -0.227 1.227 21 H -0.172 1.172 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.110 0.890 29 H 0.133 0.867 30 H 0.216 0.784 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.149 0.851 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.606 8.208 -14.830 20.543 hybrid contribution 0.377 0.594 2.023 2.142 sum -11.229 8.802 -12.807 19.173 Atomic orbital electron populations 1.21619 0.93160 1.02734 1.01600 1.20001 0.96905 0.88279 1.03338 1.22422 0.97861 0.97321 0.90090 1.77172 1.22984 0.92211 1.23481 1.48663 1.51015 1.11556 1.05169 1.22153 1.01794 0.85464 0.94944 1.22762 1.00487 1.00068 0.85314 1.20034 1.14756 0.94942 0.95959 1.20100 0.94366 0.94748 0.89562 1.60513 1.04259 1.43484 1.22261 1.19379 0.93855 0.93051 0.86046 0.98468 1.21975 0.99128 0.99200 0.98790 1.21415 0.92560 1.44701 0.97313 0.94514 1.25811 0.98809 0.94564 0.99258 1.70050 1.24410 1.47916 1.16570 0.85771 0.79990 0.79643 0.76465 1.19244 1.22750 1.17185 0.92807 0.93065 0.90458 0.90870 0.89855 0.90094 0.89018 0.86744 0.78405 0.95209 0.90834 0.85138 0.93138 0.95199 0.92255 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 9.89 71.98 0.71 -2.29 16 2 C -0.05 -1.27 6.31 29.85 0.19 -1.08 16 3 C 0.09 2.78 6.47 43.10 0.28 3.06 16 4 N -0.34 -10.45 12.58 -47.38 -0.60 -11.04 16 5 N -0.38 -9.61 4.01 -369.54 -1.48 -11.09 16 6 C 0.10 1.37 11.47 127.77 1.47 2.84 16 7 C 0.06 1.56 11.40 83.54 0.95 2.51 16 8 C -0.25 -7.50 5.61 -20.15 -0.11 -7.62 16 9 C 0.14 4.68 5.59 85.56 0.48 5.16 16 10 N -0.67 -27.29 6.29 -499.46 -3.14 -30.43 16 11 C 0.19 8.62 2.19 44.17 0.10 8.71 16 12 H 0.00 -0.10 6.86 -2.39 -0.02 -0.12 16 13 C -0.13 -5.64 8.89 71.98 0.64 -5.00 16 14 C -0.52 -29.69 9.17 25.60 0.23 -29.46 16 15 H 0.04 2.33 7.86 -2.91 -0.02 2.30 16 16 C 0.01 0.75 5.45 84.65 0.46 1.21 16 17 N -0.95 -59.41 13.96 21.45 0.30 -59.11 16 18 Si 0.95 44.87 24.37 68.60 1.67 46.54 16 19 H -0.27 -11.97 6.87 99.48 0.68 -11.28 16 20 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 21 H -0.25 -10.76 6.53 99.48 0.65 -10.11 16 22 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.08 2.53 7.96 -2.39 -0.02 2.51 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.20 3.68 8.06 -2.91 -0.02 3.66 16 31 H 0.03 0.95 8.05 -2.39 -0.02 0.93 16 32 H 0.07 2.35 7.44 -2.39 -0.02 2.33 16 33 H 0.33 14.09 8.21 -89.70 -0.74 13.35 16 34 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.03 1.29 3.27 -2.39 -0.01 1.28 16 36 H 0.06 2.11 7.45 -2.38 -0.02 2.09 16 37 H 0.27 15.58 8.31 -92.70 -0.77 14.80 16 Total: -1.00 -70.09 302.79 2.38 -67.71 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.23 Total: 19.37 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 5.40 Total: -21.94 kcal Atomic # 7 Polarization: -106.75 SS G_CDS: -4.92 Total: -111.68 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.67 Total: 46.54 kcal Total: -70.09 2.38 -67.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162721255.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.668 kcal (2) G-P(sol) polarization free energy of solvation -70.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds