Wall clock time and date at job start Mon Mar 30 2020 04:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.47036 * 2 1 4 4 C 1.46902 * 111.00221 * 65.18260 * 3 2 1 5 5 C 1.50702 * 109.47064 * 66.04387 * 4 3 2 6 6 C 1.39877 * 126.03449 * 90.02220 * 5 4 3 7 7 N 1.30842 * 108.19819 * 179.97438 * 6 5 4 8 8 N 1.40085 * 108.20516 * 359.97438 * 7 6 5 9 9 C 1.46504 * 126.03389 * 179.97438 * 8 7 6 10 10 C 1.34947 * 107.92872 * 359.76653 * 8 7 6 11 11 C 1.46902 * 111.00046 * 301.22958 * 3 2 1 12 12 H 1.09008 * 109.46710 * 66.58588 * 11 3 2 13 13 C 1.52997 * 109.47021 * 186.58627 * 11 3 2 14 14 C 1.50696 * 109.47177 * 306.58859 * 11 3 2 15 15 H 1.08004 * 119.99900 * 354.74041 * 14 11 3 16 16 C 1.37876 * 120.00480 * 174.73946 * 14 11 3 17 17 N 1.31509 * 120.00321 * 180.02562 * 16 14 11 18 18 Si 1.86804 * 119.99524 * 359.97438 * 16 14 11 19 19 H 1.48499 * 109.46908 * 90.00122 * 18 16 14 20 20 H 1.48496 * 109.47051 * 209.99989 * 18 16 14 21 21 H 1.48503 * 109.47223 * 330.00040 * 18 16 14 22 22 H 1.09000 * 109.47064 * 179.38743 * 1 2 3 23 23 H 1.08999 * 109.47341 * 299.39311 * 1 2 3 24 24 H 1.09006 * 109.46886 * 59.39488 * 1 2 3 25 25 H 1.08992 * 109.47070 * 239.99524 * 2 1 3 26 26 H 1.09000 * 109.46845 * 119.99649 * 2 1 3 27 27 H 1.08996 * 109.47051 * 306.05163 * 4 3 2 28 28 H 1.08997 * 109.47354 * 186.04408 * 4 3 2 29 29 H 1.07994 * 125.90569 * 359.96266 * 6 5 4 30 30 H 1.09004 * 109.46982 * 90.03564 * 9 8 7 31 31 H 1.08998 * 109.47185 * 210.02750 * 9 8 7 32 32 H 1.08999 * 109.47414 * 330.03425 * 9 8 7 33 33 H 1.07997 * 126.12743 * 180.23902 * 10 8 7 34 34 H 1.09005 * 109.46616 * 179.97438 * 13 11 3 35 35 H 1.09002 * 109.46968 * 299.99755 * 13 11 3 36 36 H 1.08998 * 109.47299 * 60.00470 * 13 11 3 37 37 H 0.97004 * 119.99911 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6524 2.0733 1.2448 5 6 2.3767 1.4369 2.4031 6 6 3.6332 1.8088 2.8923 7 7 3.9264 1.0284 3.9007 8 7 2.8639 0.1343 4.0857 9 6 2.7855 -0.9112 5.1089 10 6 1.9234 0.4093 3.1578 11 6 1.5248 2.1183 -1.1727 12 1 0.4434 2.2343 -1.0989 13 6 2.1833 3.4983 -1.2265 14 6 1.8633 1.3510 -2.4247 15 1 2.4662 0.4569 -2.3637 16 6 1.4036 1.7902 -3.6481 17 7 1.6987 1.1203 -4.7406 18 14 0.3603 3.3362 -3.7535 19 1 1.2420 4.5165 -3.9400 20 1 -0.5711 3.2272 -4.9049 21 1 -0.4192 3.4938 -2.4994 22 1 -0.3633 -1.0276 -0.0110 23 1 -0.3634 0.5044 0.8954 24 1 -0.3633 0.5232 -0.8846 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 0.5767 1.9928 1.4006 28 1 1.9320 3.1244 1.1748 29 1 4.2542 2.6027 2.5046 30 1 2.3188 -0.5065 6.0069 31 1 2.1898 -1.7432 4.7333 32 1 3.7895 -1.2619 5.3477 33 1 0.9794 -0.1012 3.0374 34 1 1.8163 4.0422 -2.0969 35 1 1.9383 4.0533 -0.3209 36 1 3.2645 3.3823 -1.3003 37 1 1.3755 1.4295 -5.6014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195518996.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:50 Heat of formation + Delta-G solvation = 94.726155 kcal Electronic energy + Delta-G solvation = -17378.358535 eV Core-core repulsion = 14772.275051 eV Total energy + Delta-G solvation = -2606.083483 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.98634 -37.62135 -33.38305 -32.69691 -30.86688 -30.60007 -28.38375 -26.69445 -25.34989 -23.89555 -22.03062 -20.84584 -20.10010 -18.66689 -16.65279 -16.54273 -15.41406 -15.18938 -14.47444 -14.30241 -14.20261 -13.42800 -13.22939 -12.84616 -12.65347 -12.53270 -12.36187 -12.08895 -11.88384 -11.49122 -11.22791 -10.75643 -10.55356 -10.49388 -10.35135 -10.26715 -9.70791 -9.56602 -9.18551 -8.93708 -8.52851 -8.13514 -7.15429 -6.02743 -4.00620 2.07221 2.67808 3.07516 3.29168 3.38662 3.39774 4.43174 4.59550 4.99145 5.05221 5.08622 5.27358 5.29387 5.33449 5.55310 5.78602 5.86601 6.02862 6.06973 6.13146 6.24328 6.32512 6.51347 6.52582 6.56823 6.65950 6.82571 6.88806 7.04937 7.07599 7.18359 7.39701 7.67599 7.90516 8.05743 8.21915 8.73226 9.05202 9.59927 11.10071 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042494 B = 0.006347 C = 0.006033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.759281 B = 4410.605025 C = 4639.684683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.064 3.936 3 N -0.517 5.517 4 C 0.118 3.882 5 C -0.207 4.207 6 C 0.066 3.934 7 N -0.308 5.308 8 N -0.384 5.384 9 C 0.106 3.894 10 C 0.051 3.949 11 C 0.178 3.822 12 H 0.003 0.997 13 C -0.145 4.145 14 C -0.499 4.499 15 H 0.082 0.918 16 C 0.070 3.930 17 N -0.901 5.901 18 Si 0.878 3.122 19 H -0.277 1.277 20 H -0.296 1.296 21 H -0.267 1.267 22 H 0.045 0.955 23 H 0.039 0.961 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.051 0.949 27 H 0.031 0.969 28 H 0.078 0.922 29 H 0.181 0.819 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.167 0.833 34 H 0.040 0.960 35 H 0.028 0.972 36 H 0.059 0.941 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.802 -1.276 16.406 16.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.065 4.065 3 N -0.241 5.241 4 C -0.011 4.011 5 C -0.219 4.219 6 C -0.120 4.120 7 N -0.130 5.130 8 N -0.167 5.167 9 C -0.036 4.036 10 C -0.095 4.095 11 C 0.071 3.929 12 H 0.020 0.980 13 C -0.202 4.202 14 C -0.538 4.538 15 H 0.100 0.900 16 C -0.131 4.131 17 N -0.540 5.540 18 Si 0.707 3.293 19 H -0.204 1.204 20 H -0.224 1.224 21 H -0.192 1.192 22 H 0.065 0.935 23 H 0.058 0.942 24 H 0.088 0.912 25 H 0.104 0.896 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.096 0.904 29 H 0.198 0.802 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.184 0.816 34 H 0.059 0.941 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.457 -1.705 17.180 17.270 hybrid contribution -2.101 0.997 -0.831 2.470 sum -2.559 -0.707 16.349 16.564 Atomic orbital electron populations 1.22367 0.99600 1.00890 1.01592 1.21951 0.91853 0.91100 1.01547 1.62153 1.59361 1.01840 1.00701 1.20443 0.95409 0.97765 0.87511 1.20108 0.97694 1.01987 1.02087 1.23764 0.95900 0.98872 0.93498 1.77288 1.09617 1.04976 1.21113 1.48357 1.14079 1.27779 1.26522 1.21746 1.04068 0.88211 0.89575 1.22282 0.95822 0.99187 0.92208 1.19724 0.92703 0.91126 0.89344 0.97991 1.22170 1.02186 0.97794 0.98077 1.20984 1.32725 1.11418 0.88642 0.90011 1.24903 0.95863 0.96610 0.95728 1.69883 1.46189 1.39680 0.98248 0.86972 0.80610 0.84328 0.77347 1.20411 1.22355 1.19211 0.93548 0.94174 0.91239 0.89617 0.93076 0.95087 0.90362 0.80177 0.91293 0.89805 0.89609 0.81589 0.94132 0.95337 0.92158 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.26 9.23 37.16 0.34 -2.92 16 2 C 0.06 1.22 5.47 -3.82 -0.02 1.20 16 3 N -0.52 -10.50 4.56 -229.48 -1.05 -11.55 16 4 C 0.12 2.00 5.13 -4.97 -0.03 1.98 16 5 C -0.21 -3.24 4.99 -105.05 -0.52 -3.76 16 6 C 0.07 1.02 11.96 -17.36 -0.21 0.82 16 7 N -0.31 -4.85 12.58 30.63 0.39 -4.46 16 8 N -0.38 -5.13 4.01 -68.16 -0.27 -5.41 16 9 C 0.11 0.89 11.47 59.85 0.69 1.58 16 10 C 0.05 0.70 9.91 -17.22 -0.17 0.53 16 11 C 0.18 4.12 1.04 -68.87 -0.07 4.05 16 12 H 0.00 0.06 5.33 -51.92 -0.28 -0.21 16 13 C -0.14 -3.13 8.64 37.16 0.32 -2.81 16 14 C -0.50 -13.66 8.22 -34.44 -0.28 -13.94 16 15 H 0.08 2.46 6.67 -52.48 -0.35 2.11 16 16 C 0.07 1.99 5.45 -17.82 -0.10 1.90 16 17 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 18 Si 0.88 21.62 24.65 -169.99 -4.19 17.42 16 19 H -0.28 -6.70 6.88 56.52 0.39 -6.31 16 20 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.27 -6.31 6.39 56.52 0.36 -5.95 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.04 0.62 6.43 -51.93 -0.33 0.29 16 24 H 0.07 1.42 6.40 -51.93 -0.33 1.09 16 25 H 0.09 1.89 6.24 -51.93 -0.32 1.57 16 26 H 0.05 0.89 6.05 -51.93 -0.31 0.58 16 27 H 0.03 0.52 6.19 -51.93 -0.32 0.19 16 28 H 0.08 1.31 5.93 -51.93 -0.31 1.00 16 29 H 0.18 2.45 8.06 -52.49 -0.42 2.03 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16 34 H 0.04 0.91 3.98 -51.93 -0.21 0.70 16 35 H 0.03 0.52 6.26 -51.93 -0.33 0.20 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 286.27 15.07 4.31 4.31 Total: -1.00 -31.70 286.27 -5.33 -37.02 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -5.24 Total: 0.55 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -0.05 Total: -11.39 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: -0.16 Total: -47.93 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.19 Total: 17.42 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.70 -5.33 -37.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195518996.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.751 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds