Wall clock time and date at job start Mon Mar 30 2020 04:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.47036 * 2 1 4 4 C 1.46902 * 111.00221 * 65.18260 * 3 2 1 5 5 C 1.50702 * 109.47064 * 66.04387 * 4 3 2 6 6 C 1.39877 * 126.03449 * 90.02220 * 5 4 3 7 7 N 1.30842 * 108.19819 * 179.97438 * 6 5 4 8 8 N 1.40085 * 108.20516 * 359.97438 * 7 6 5 9 9 C 1.46504 * 126.03389 * 179.97438 * 8 7 6 10 10 C 1.34947 * 107.92872 * 359.76653 * 8 7 6 11 11 C 1.46902 * 111.00046 * 301.22958 * 3 2 1 12 12 H 1.09008 * 109.46710 * 66.58588 * 11 3 2 13 13 C 1.52997 * 109.47021 * 186.58627 * 11 3 2 14 14 C 1.50696 * 109.47177 * 306.58859 * 11 3 2 15 15 H 1.08004 * 119.99900 * 354.74041 * 14 11 3 16 16 C 1.37876 * 120.00480 * 174.73946 * 14 11 3 17 17 N 1.31509 * 120.00321 * 180.02562 * 16 14 11 18 18 Si 1.86804 * 119.99524 * 359.97438 * 16 14 11 19 19 H 1.48499 * 109.46908 * 90.00122 * 18 16 14 20 20 H 1.48496 * 109.47051 * 209.99989 * 18 16 14 21 21 H 1.48503 * 109.47223 * 330.00040 * 18 16 14 22 22 H 1.09000 * 109.47064 * 179.38743 * 1 2 3 23 23 H 1.08999 * 109.47341 * 299.39311 * 1 2 3 24 24 H 1.09006 * 109.46886 * 59.39488 * 1 2 3 25 25 H 1.08992 * 109.47070 * 239.99524 * 2 1 3 26 26 H 1.09000 * 109.46845 * 119.99649 * 2 1 3 27 27 H 1.08996 * 109.47051 * 306.05163 * 4 3 2 28 28 H 1.08997 * 109.47354 * 186.04408 * 4 3 2 29 29 H 1.07994 * 125.90569 * 359.96266 * 6 5 4 30 30 H 1.09004 * 109.46982 * 90.03564 * 9 8 7 31 31 H 1.08998 * 109.47185 * 210.02750 * 9 8 7 32 32 H 1.08999 * 109.47414 * 330.03425 * 9 8 7 33 33 H 1.07997 * 126.12743 * 180.23902 * 10 8 7 34 34 H 1.09005 * 109.46616 * 179.97438 * 13 11 3 35 35 H 1.09002 * 109.46968 * 299.99755 * 13 11 3 36 36 H 1.08998 * 109.47299 * 60.00470 * 13 11 3 37 37 H 0.97004 * 119.99911 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6524 2.0733 1.2448 5 6 2.3767 1.4369 2.4031 6 6 3.6332 1.8088 2.8923 7 7 3.9264 1.0284 3.9007 8 7 2.8639 0.1343 4.0857 9 6 2.7855 -0.9112 5.1089 10 6 1.9234 0.4093 3.1578 11 6 1.5248 2.1183 -1.1727 12 1 0.4434 2.2343 -1.0989 13 6 2.1833 3.4983 -1.2265 14 6 1.8633 1.3510 -2.4247 15 1 2.4662 0.4569 -2.3637 16 6 1.4036 1.7902 -3.6481 17 7 1.6987 1.1203 -4.7406 18 14 0.3603 3.3362 -3.7535 19 1 1.2420 4.5165 -3.9400 20 1 -0.5711 3.2272 -4.9049 21 1 -0.4192 3.4938 -2.4994 22 1 -0.3633 -1.0276 -0.0110 23 1 -0.3634 0.5044 0.8954 24 1 -0.3633 0.5232 -0.8846 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 0.5767 1.9928 1.4006 28 1 1.9320 3.1244 1.1748 29 1 4.2542 2.6027 2.5046 30 1 2.3188 -0.5065 6.0069 31 1 2.1898 -1.7432 4.7333 32 1 3.7895 -1.2619 5.3477 33 1 0.9794 -0.1012 3.0374 34 1 1.8163 4.0422 -2.0969 35 1 1.9383 4.0533 -0.3209 36 1 3.2645 3.3823 -1.3003 37 1 1.3755 1.4295 -5.6014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195518996.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:50 Heat of formation + Delta-G solvation = 71.832379 kcal Electronic energy + Delta-G solvation = -17379.351283 eV Core-core repulsion = 14772.275051 eV Total energy + Delta-G solvation = -2607.076232 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.06955 -39.20977 -34.97350 -34.06475 -32.67035 -31.87410 -29.70251 -27.84762 -27.12010 -25.35285 -23.64078 -21.89045 -21.43451 -20.22545 -18.67371 -17.62020 -16.92116 -16.48374 -16.10524 -15.81321 -15.26153 -14.89722 -14.76979 -14.41002 -13.97162 -13.72661 -13.57249 -13.43684 -13.25230 -12.94297 -12.73712 -12.52566 -12.30717 -12.15050 -12.02867 -11.60352 -11.41995 -11.28205 -10.88351 -10.66614 -10.24405 -9.27543 -8.71547 -8.21347 -6.23018 1.01959 1.34582 1.37833 1.47529 1.78483 1.91001 2.37116 3.13657 3.52315 3.77822 4.04146 4.27493 4.39847 4.41567 4.48809 4.57689 4.59422 4.63502 4.72436 4.76278 4.80052 4.84444 4.93352 5.02199 5.05307 5.19602 5.31838 5.42966 5.51146 5.58743 5.77309 5.78009 6.14478 6.23191 6.55014 6.81771 6.84409 6.88246 7.41983 8.95101 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042494 B = 0.006347 C = 0.006033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.759281 B = 4410.605025 C = 4639.684683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.068 3.932 3 N -0.532 5.532 4 C 0.125 3.875 5 C -0.233 4.233 6 C 0.053 3.947 7 N -0.336 5.336 8 N -0.382 5.382 9 C 0.094 3.906 10 C 0.062 3.938 11 C 0.184 3.816 12 H 0.000 1.000 13 C -0.142 4.142 14 C -0.494 4.494 15 H 0.038 0.962 16 C 0.012 3.988 17 N -0.952 5.952 18 Si 0.938 3.062 19 H -0.267 1.267 20 H -0.299 1.299 21 H -0.246 1.246 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.036 0.964 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.081 0.919 29 H 0.188 0.812 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.195 0.805 34 H 0.032 0.968 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.182 -0.623 18.924 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.060 4.060 3 N -0.255 5.255 4 C -0.003 4.003 5 C -0.244 4.244 6 C -0.132 4.132 7 N -0.158 5.158 8 N -0.164 5.164 9 C -0.046 4.046 10 C -0.085 4.085 11 C 0.076 3.924 12 H 0.018 0.982 13 C -0.199 4.199 14 C -0.532 4.532 15 H 0.056 0.944 16 C -0.184 4.184 17 N -0.594 5.594 18 Si 0.765 3.235 19 H -0.193 1.193 20 H -0.227 1.227 21 H -0.170 1.170 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.205 0.795 30 H 0.106 0.894 31 H 0.128 0.872 32 H 0.107 0.893 33 H 0.212 0.788 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.822 -1.056 19.750 19.862 hybrid contribution -1.608 0.636 -1.497 2.287 sum -3.430 -0.420 18.254 18.578 Atomic orbital electron populations 1.22253 0.97992 1.02040 1.01216 1.21832 0.93126 0.90565 1.00478 1.62071 1.59917 1.02243 1.01310 1.20389 0.96154 0.97641 0.86136 1.20037 0.98169 1.03594 1.02632 1.23976 0.96248 0.99298 0.93686 1.77240 1.11056 1.05908 1.21608 1.48758 1.13161 1.27660 1.26850 1.22157 1.05108 0.87913 0.89375 1.22669 0.96454 0.98177 0.91245 1.19528 0.92607 0.91626 0.88674 0.98240 1.22085 1.01386 0.96982 0.99494 1.21207 1.31021 1.10180 0.90814 0.94367 1.25713 0.97430 0.99996 0.95291 1.70043 1.48373 1.41979 0.98961 0.85977 0.79109 0.80458 0.77942 1.19271 1.22692 1.16998 0.91678 0.91468 0.94520 0.93833 0.90913 0.94033 0.90072 0.79509 0.89369 0.87163 0.89336 0.78807 0.94912 0.91753 0.93035 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.86 9.23 71.98 0.66 -5.20 16 2 C 0.07 2.57 5.47 86.30 0.47 3.04 16 3 N -0.53 -21.07 4.56 -879.93 -4.02 -25.08 16 4 C 0.12 3.93 5.13 85.56 0.44 4.37 16 5 C -0.23 -6.70 4.99 -20.14 -0.10 -6.80 16 6 C 0.05 1.57 11.96 85.24 1.02 2.59 16 7 N -0.34 -9.99 12.58 -57.02 -0.72 -10.70 16 8 N -0.38 -9.08 4.01 -369.56 -1.48 -10.56 16 9 C 0.09 1.26 11.47 127.77 1.47 2.73 16 10 C 0.06 1.49 9.91 83.54 0.83 2.31 16 11 C 0.18 8.35 1.04 44.17 0.05 8.40 16 12 H 0.00 0.01 5.33 -2.38 -0.01 0.00 16 13 C -0.14 -5.88 8.64 71.98 0.62 -5.26 16 14 C -0.49 -27.76 8.22 25.60 0.21 -27.55 16 15 H 0.04 2.43 6.67 -2.91 -0.02 2.41 16 16 C 0.01 0.70 5.45 84.66 0.46 1.17 16 17 N -0.95 -59.69 13.96 21.45 0.30 -59.39 16 18 Si 0.94 44.45 24.65 68.60 1.69 46.14 16 19 H -0.27 -12.11 6.88 99.48 0.68 -11.43 16 20 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 21 H -0.25 -10.74 6.39 99.48 0.64 -10.11 16 22 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.07 1.86 6.43 -2.39 -0.02 1.84 16 24 H 0.04 1.45 6.40 -2.38 -0.02 1.44 16 25 H 0.04 1.99 6.24 -2.39 -0.01 1.98 16 26 H 0.07 2.40 6.05 -2.39 -0.01 2.39 16 27 H 0.04 1.23 6.19 -2.39 -0.01 1.21 16 28 H 0.08 2.48 5.93 -2.39 -0.01 2.46 16 29 H 0.19 4.94 8.06 -2.91 -0.02 4.91 16 30 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.20 3.43 8.06 -2.91 -0.02 3.41 16 34 H 0.03 1.39 3.98 -2.38 -0.01 1.38 16 35 H 0.06 2.19 6.26 -2.39 -0.01 2.17 16 36 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.26 15.53 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -70.43 286.27 2.87 -67.56 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.97 Total: 12.23 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 6.13 Total: -20.19 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -5.92 Total: -105.75 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.69 Total: 46.14 kcal Total: -70.43 2.87 -67.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195518996.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.390 kcal (2) G-P(sol) polarization free energy of solvation -70.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds