Wall clock time and date at job start Mon Mar 30 2020 03:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39872 * 125.89613 * 2 1 4 4 C 1.35314 * 107.91954 * 180.14407 * 3 2 1 5 5 C 1.50703 * 126.12759 * 179.90471 * 4 3 2 6 6 N 1.34949 * 107.74826 * 359.63758 * 4 3 2 7 7 C 1.46492 * 126.04227 * 180.20931 * 6 4 3 8 8 C 1.53001 * 109.47510 * 89.99746 * 7 6 4 9 9 C 1.52992 * 109.47609 * 180.02562 * 8 7 6 10 10 N 1.46901 * 109.47292 * 180.02562 * 9 8 7 11 11 C 1.46907 * 110.99976 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47024 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99876 * 359.97438 * 12 11 10 14 14 C 1.37869 * 119.99972 * 179.97438 * 12 11 10 15 15 N 1.31523 * 119.99981 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00006 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47346 * 60.00170 * 16 14 12 18 18 H 1.48507 * 109.46799 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46819 * 299.99684 * 16 14 12 20 20 N 1.30835 * 125.89924 * 179.73974 * 2 1 3 21 21 H 1.08996 * 109.47154 * 270.23207 * 1 2 3 22 22 H 1.09001 * 109.47360 * 30.23828 * 1 2 3 23 23 H 1.08999 * 109.46997 * 150.23794 * 1 2 3 24 24 H 1.08000 * 126.03890 * 0.02562 * 3 2 1 25 25 H 1.09002 * 109.47152 * 269.68517 * 5 4 3 26 26 H 1.09001 * 109.46980 * 149.68618 * 5 4 3 27 27 H 1.09004 * 109.47113 * 29.68598 * 5 4 3 28 28 H 1.09001 * 109.47504 * 210.00369 * 7 6 4 29 29 H 1.09010 * 109.47188 * 330.00050 * 7 6 4 30 30 H 1.09001 * 109.47246 * 300.00781 * 8 7 6 31 31 H 1.09010 * 109.46647 * 59.99972 * 8 7 6 32 32 H 1.09001 * 109.47252 * 300.00530 * 9 8 7 33 33 H 1.09000 * 109.47097 * 59.99629 * 9 8 7 34 34 H 1.00904 * 110.99425 * 303.94675 * 10 9 8 35 35 H 1.08996 * 109.46651 * 299.99429 * 11 10 9 36 36 H 1.09000 * 109.47181 * 59.99892 * 11 10 9 37 37 H 0.97000 * 119.99620 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0032 5 6 4.8350 1.5991 -0.0064 6 7 3.6088 -0.6340 0.0029 7 6 4.7899 -1.5006 0.0065 8 6 5.2017 -1.7958 1.4502 9 6 6.4356 -2.7003 1.4539 10 7 6.8305 -2.9841 2.8401 11 6 8.0152 -3.8518 2.8828 12 6 8.3900 -4.1198 4.3176 13 1 7.8068 -3.6885 5.1177 14 6 9.4775 -4.9157 4.6089 15 7 10.1874 -5.4414 3.6345 16 14 9.9416 -5.2486 6.3874 17 1 8.8108 -5.9202 7.0768 18 1 11.1386 -6.1266 6.4305 19 1 10.2443 -3.9643 7.0686 20 7 2.2742 -1.0598 0.0048 21 1 -0.3633 0.0042 1.0276 22 1 -0.3634 0.8878 -0.5175 23 1 -0.3633 -0.8921 -0.5101 24 1 1.9922 2.1598 0.0004 25 1 5.1300 1.8074 -1.0349 26 1 5.6508 1.0934 0.5102 27 1 4.6072 2.5354 0.5030 28 1 4.5563 -2.4354 -0.5031 29 1 5.6093 -1.0003 -0.5100 30 1 5.4354 -0.8610 1.9597 31 1 4.3824 -2.2961 1.9666 32 1 6.2023 -3.6352 0.9442 33 1 7.2546 -2.1997 0.9375 34 1 6.9898 -2.1298 3.3527 35 1 7.7933 -4.7944 2.3827 36 1 8.8452 -3.3585 2.3769 37 1 10.9523 -6.0017 3.8395 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217904355.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:23 Heat of formation + Delta-G solvation = 55.024622 kcal Electronic energy + Delta-G solvation = -16006.690395 eV Core-core repulsion = 13398.885324 eV Total energy + Delta-G solvation = -2607.805071 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.29376 -36.37944 -34.42159 -32.83757 -32.10384 -30.83504 -28.44372 -27.08509 -26.30006 -23.94228 -21.54737 -21.21837 -20.41494 -19.26728 -16.70525 -16.30561 -15.50456 -15.40410 -14.65061 -14.25205 -13.95935 -13.63713 -13.55548 -13.39720 -13.05537 -12.74241 -12.64545 -12.49082 -11.96597 -11.79428 -11.68549 -11.60113 -11.07042 -10.78838 -10.67817 -10.57658 -10.45535 -9.94810 -9.25105 -9.03914 -8.50399 -8.49489 -7.36621 -6.05797 -4.08126 1.84823 2.48280 2.73973 3.32392 3.36127 3.39530 4.40264 4.45032 4.52081 4.81190 4.89371 4.98163 5.21991 5.23404 5.29015 5.30165 5.46144 5.49601 5.51660 5.58667 5.64956 5.71927 5.79018 5.83757 5.96265 6.15600 6.32728 6.41924 6.68300 7.04247 7.19612 7.36617 7.74732 7.76789 8.08921 8.33409 8.56067 9.00655 9.56971 11.05337 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.046053 B = 0.003527 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.846292 B = 7936.224979 C = 8079.416401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.065 3.935 3 C -0.279 4.279 4 C 0.085 3.915 5 C -0.095 4.095 6 N -0.362 5.362 7 C 0.131 3.869 8 C -0.130 4.130 9 C 0.063 3.937 10 N -0.690 5.690 11 C 0.194 3.806 12 C -0.517 4.517 13 H 0.062 0.938 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.901 3.099 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.277 1.277 20 N -0.294 5.294 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.143 0.857 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.020 0.980 34 H 0.328 0.672 35 H 0.028 0.972 36 H -0.013 1.013 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.351 14.175 -9.367 21.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.101 4.101 3 C -0.309 4.309 4 C -0.043 4.043 5 C -0.153 4.153 6 N -0.144 5.144 7 C 0.010 3.990 8 C -0.169 4.169 9 C -0.068 4.068 10 N -0.320 5.320 11 C 0.068 3.932 12 C -0.555 4.555 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.728 3.272 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.202 1.202 20 N -0.117 5.117 21 H 0.093 0.907 22 H 0.093 0.907 23 H 0.089 0.911 24 H 0.161 0.839 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.038 0.962 34 H 0.145 0.855 35 H 0.046 0.954 36 H 0.004 0.996 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.459 12.144 -9.335 20.390 hybrid contribution 1.132 1.195 0.648 1.769 sum -12.327 13.339 -8.687 20.133 Atomic orbital electron populations 1.20136 0.86948 1.02965 1.02808 1.22290 0.96847 0.90909 1.00053 1.21058 0.91017 0.99558 1.19232 1.21121 0.97289 0.84867 1.00977 1.20477 0.93316 0.98271 1.03224 1.48660 1.05378 1.04040 1.56345 1.21774 0.83252 0.94755 0.99229 1.21976 0.99940 1.00589 0.94425 1.21770 0.94121 0.97984 0.92893 1.60656 1.41229 1.20245 1.09906 1.19561 0.84540 0.91776 0.97360 1.21152 1.11763 1.30482 0.92132 0.91988 1.24995 0.96177 0.95753 0.97640 1.69955 1.18795 1.33455 1.31579 0.86519 0.77818 0.78192 0.84634 1.20102 1.21295 1.20234 1.77343 0.86433 1.22682 1.25226 0.90688 0.90704 0.91106 0.83950 0.90312 0.90788 0.89693 0.88565 0.89088 0.91886 0.90260 0.91426 0.96173 0.85534 0.95351 0.99557 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.45 36.01 0.38 -0.25 16 2 C 0.06 0.83 7.22 -82.40 -0.59 0.24 16 3 C -0.28 -3.29 10.65 -40.01 -0.43 -3.71 16 4 C 0.09 1.02 6.93 -82.26 -0.57 0.45 16 5 C -0.09 -0.79 9.90 36.01 0.36 -0.43 16 6 N -0.36 -4.97 3.61 -57.14 -0.21 -5.18 16 7 C 0.13 1.62 6.07 -4.05 -0.02 1.59 16 8 C -0.13 -1.86 5.80 -26.74 -0.16 -2.02 16 9 C 0.06 1.08 5.68 -3.83 -0.02 1.06 16 10 N -0.69 -14.89 6.49 -115.06 -0.75 -15.64 16 11 C 0.19 5.13 5.44 -4.97 -0.03 5.10 16 12 C -0.52 -14.81 9.32 -34.44 -0.32 -15.13 16 13 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 16 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 N -0.29 -4.49 12.58 33.67 0.42 -4.06 16 21 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.62 7.72 -51.93 -0.40 0.22 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.09 0.91 7.66 -51.92 -0.40 0.52 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 1.30 8.14 -51.92 -0.42 0.87 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.33 6.73 8.72 -39.29 -0.34 6.38 16 35 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 36 H -0.01 -0.37 8.14 -51.93 -0.42 -0.79 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 LS Contribution 315.72 15.07 4.76 4.76 Total: -1.00 -32.71 315.72 -7.74 -40.46 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.18 Total: 0.71 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -1.51 Total: -11.60 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.21 Total: -51.11 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.71 -7.74 -40.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217904355.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.483 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds