Wall clock time and date at job start Mon Mar 30 2020 03:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39872 * 125.89613 * 2 1 4 4 C 1.35314 * 107.91954 * 180.14407 * 3 2 1 5 5 C 1.50703 * 126.12759 * 179.90471 * 4 3 2 6 6 N 1.34949 * 107.74826 * 359.63758 * 4 3 2 7 7 C 1.46492 * 126.04227 * 180.20931 * 6 4 3 8 8 C 1.53001 * 109.47510 * 89.99746 * 7 6 4 9 9 C 1.52992 * 109.47609 * 180.02562 * 8 7 6 10 10 N 1.46901 * 109.47292 * 180.02562 * 9 8 7 11 11 C 1.46907 * 110.99976 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47024 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99876 * 359.97438 * 12 11 10 14 14 C 1.37869 * 119.99972 * 179.97438 * 12 11 10 15 15 N 1.31523 * 119.99981 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00006 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47346 * 60.00170 * 16 14 12 18 18 H 1.48507 * 109.46799 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46819 * 299.99684 * 16 14 12 20 20 N 1.30835 * 125.89924 * 179.73974 * 2 1 3 21 21 H 1.08996 * 109.47154 * 270.23207 * 1 2 3 22 22 H 1.09001 * 109.47360 * 30.23828 * 1 2 3 23 23 H 1.08999 * 109.46997 * 150.23794 * 1 2 3 24 24 H 1.08000 * 126.03890 * 0.02562 * 3 2 1 25 25 H 1.09002 * 109.47152 * 269.68517 * 5 4 3 26 26 H 1.09001 * 109.46980 * 149.68618 * 5 4 3 27 27 H 1.09004 * 109.47113 * 29.68598 * 5 4 3 28 28 H 1.09001 * 109.47504 * 210.00369 * 7 6 4 29 29 H 1.09010 * 109.47188 * 330.00050 * 7 6 4 30 30 H 1.09001 * 109.47246 * 300.00781 * 8 7 6 31 31 H 1.09010 * 109.46647 * 59.99972 * 8 7 6 32 32 H 1.09001 * 109.47252 * 300.00530 * 9 8 7 33 33 H 1.09000 * 109.47097 * 59.99629 * 9 8 7 34 34 H 1.00904 * 110.99425 * 303.94675 * 10 9 8 35 35 H 1.08996 * 109.46651 * 299.99429 * 11 10 9 36 36 H 1.09000 * 109.47181 * 59.99892 * 11 10 9 37 37 H 0.97000 * 119.99620 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0032 5 6 4.8350 1.5991 -0.0064 6 7 3.6088 -0.6340 0.0029 7 6 4.7899 -1.5006 0.0065 8 6 5.2017 -1.7958 1.4502 9 6 6.4356 -2.7003 1.4539 10 7 6.8305 -2.9841 2.8401 11 6 8.0152 -3.8518 2.8828 12 6 8.3900 -4.1198 4.3176 13 1 7.8068 -3.6885 5.1177 14 6 9.4775 -4.9157 4.6089 15 7 10.1874 -5.4414 3.6345 16 14 9.9416 -5.2486 6.3874 17 1 8.8108 -5.9202 7.0768 18 1 11.1386 -6.1266 6.4305 19 1 10.2443 -3.9643 7.0686 20 7 2.2742 -1.0598 0.0048 21 1 -0.3633 0.0042 1.0276 22 1 -0.3634 0.8878 -0.5175 23 1 -0.3633 -0.8921 -0.5101 24 1 1.9922 2.1598 0.0004 25 1 5.1300 1.8074 -1.0349 26 1 5.6508 1.0934 0.5102 27 1 4.6072 2.5354 0.5030 28 1 4.5563 -2.4354 -0.5031 29 1 5.6093 -1.0003 -0.5100 30 1 5.4354 -0.8610 1.9597 31 1 4.3824 -2.2961 1.9666 32 1 6.2023 -3.6352 0.9442 33 1 7.2546 -2.1997 0.9375 34 1 6.9898 -2.1298 3.3527 35 1 7.7933 -4.7944 2.3827 36 1 8.8452 -3.3585 2.3769 37 1 10.9523 -6.0017 3.8395 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217904355.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:23 Heat of formation + Delta-G solvation = 33.001744 kcal Electronic energy + Delta-G solvation = -16007.645379 eV Core-core repulsion = 13398.885324 eV Total energy + Delta-G solvation = -2608.760055 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.20780 -37.87220 -35.80342 -34.54496 -33.24076 -31.97795 -29.70064 -28.04151 -27.80397 -25.33289 -23.43066 -22.59751 -21.31823 -20.16646 -18.60276 -17.52989 -16.97710 -16.63370 -16.28347 -15.60878 -15.14970 -14.87904 -14.65680 -14.30135 -14.12184 -13.92651 -13.71485 -13.57650 -13.29873 -13.08199 -12.91369 -12.76002 -12.64581 -12.49947 -12.37979 -12.01005 -11.85421 -11.40778 -11.34597 -10.67808 -10.00896 -9.41376 -9.17470 -8.25066 -6.36710 0.92676 1.40243 1.43973 1.51946 1.57012 1.85454 2.38640 3.08243 3.42830 3.57560 3.76143 3.91239 4.11513 4.14841 4.22705 4.39269 4.44886 4.55344 4.62569 4.71964 4.79169 4.83530 4.90708 4.99355 5.02017 5.06623 5.11684 5.17277 5.24427 5.36695 5.58428 5.82159 5.98754 6.16585 6.40108 6.68182 6.83610 6.85102 7.34445 8.86343 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.046053 B = 0.003527 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.846292 B = 7936.224979 C = 8079.416401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.056 3.944 3 C -0.291 4.291 4 C 0.080 3.920 5 C -0.093 4.093 6 N -0.377 5.377 7 C 0.136 3.864 8 C -0.111 4.111 9 C 0.065 3.935 10 N -0.695 5.695 11 C 0.208 3.792 12 C -0.541 4.541 13 H 0.063 0.937 14 C 0.002 3.998 15 N -0.933 5.933 16 Si 0.974 3.026 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.264 1.264 20 N -0.345 5.345 21 H 0.083 0.917 22 H 0.099 0.901 23 H 0.068 0.932 24 H 0.167 0.833 25 H 0.095 0.905 26 H 0.073 0.927 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.118 0.882 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.035 0.965 34 H 0.336 0.664 35 H -0.001 1.001 36 H -0.033 1.033 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.610 15.855 -8.911 22.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.110 4.110 3 C -0.320 4.320 4 C -0.047 4.047 5 C -0.151 4.151 6 N -0.159 5.159 7 C 0.014 3.986 8 C -0.149 4.149 9 C -0.065 4.065 10 N -0.326 5.326 11 C 0.081 3.919 12 C -0.579 4.579 13 H 0.082 0.918 14 C -0.197 4.197 15 N -0.573 5.573 16 Si 0.798 3.202 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.189 1.189 20 N -0.168 5.168 21 H 0.101 0.899 22 H 0.117 0.883 23 H 0.087 0.913 24 H 0.185 0.815 25 H 0.114 0.886 26 H 0.092 0.908 27 H 0.120 0.880 28 H 0.111 0.889 29 H 0.136 0.864 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.153 0.847 35 H 0.018 0.982 36 H -0.016 1.016 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.743 13.848 -8.888 21.439 hybrid contribution 1.159 0.720 0.448 1.436 sum -12.583 14.568 -8.441 21.019 Atomic orbital electron populations 1.20268 0.84744 1.04074 1.03639 1.22970 0.98461 0.90872 0.98669 1.21460 0.90933 1.00472 1.19098 1.21788 0.98805 0.84487 0.99636 1.20610 0.91717 0.98195 1.04558 1.48733 1.05057 1.04858 1.57264 1.21723 0.83961 0.95239 0.97668 1.21720 0.97460 0.99772 0.95995 1.21798 0.95700 0.98585 0.90410 1.60508 1.38723 1.20435 1.12907 1.19206 0.85481 0.91218 0.96029 1.21533 1.12287 1.30991 0.93116 0.91844 1.25961 0.95944 0.95227 1.02519 1.70079 1.19271 1.33953 1.34028 0.85370 0.77613 0.78510 0.78718 1.19496 1.20633 1.18914 1.77285 0.87537 1.24461 1.27512 0.89888 0.88272 0.91308 0.81527 0.88626 0.90784 0.87959 0.88939 0.86388 0.91083 0.92674 0.92115 0.94723 0.84676 0.98242 1.01582 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 10.45 71.24 0.74 -0.40 16 2 C 0.06 1.39 7.22 43.10 0.31 1.70 16 3 C -0.29 -6.31 10.65 21.99 0.23 -6.08 16 4 C 0.08 1.77 6.93 41.41 0.29 2.06 16 5 C -0.09 -1.29 9.90 71.24 0.71 -0.58 16 6 N -0.38 -10.03 3.61 -334.70 -1.21 -11.24 16 7 C 0.14 3.21 6.07 86.38 0.52 3.74 16 8 C -0.11 -3.10 5.80 30.59 0.18 -2.92 16 9 C 0.07 2.22 5.68 86.30 0.49 2.71 16 10 N -0.69 -30.20 6.49 -517.93 -3.36 -33.56 16 11 C 0.21 11.26 5.44 85.56 0.47 11.73 16 12 C -0.54 -31.25 9.32 25.60 0.24 -31.02 16 13 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 14 C 0.00 0.11 5.46 84.65 0.46 0.57 16 15 N -0.93 -56.56 13.29 21.45 0.28 -56.27 16 16 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 20 N -0.34 -10.51 12.58 -47.38 -0.60 -11.10 16 21 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.17 2.62 8.06 -2.91 -0.02 2.59 16 25 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 1.04 7.72 -2.39 -0.02 1.02 16 27 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.12 2.13 7.66 -2.38 -0.02 2.11 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.34 13.68 8.72 -89.69 -0.78 12.89 16 35 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H -0.03 -1.91 8.14 -2.39 -0.02 -1.93 16 37 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -70.94 315.72 2.04 -68.91 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.25 Total: 15.33 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 4.64 Total: -18.50 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -4.88 Total: -112.18 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -70.94 2.04 -68.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217904355.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.908 kcal (2) G-P(sol) polarization free energy of solvation -70.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds