Wall clock time and date at job start Mon Mar 30 2020 03:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46752 * 2 1 4 4 N 1.46496 * 109.47591 * 119.99778 * 2 1 3 5 5 C 1.36940 * 119.99748 * 300.58742 * 4 2 1 6 6 H 1.08000 * 120.00295 * 36.00934 * 5 4 2 7 7 C 1.38812 * 119.99590 * 215.99804 * 5 4 2 8 8 N 1.31629 * 119.99709 * 214.45953 * 7 5 4 9 9 Si 1.86800 * 120.00188 * 34.46352 * 7 5 4 10 10 H 1.48501 * 109.46679 * 95.18467 * 9 7 5 11 11 H 1.48501 * 109.47168 * 215.18501 * 9 7 5 12 12 H 1.48499 * 109.47029 * 335.18562 * 9 7 5 13 13 C 1.46502 * 119.99929 * 120.58471 * 4 2 1 14 14 C 1.53000 * 109.46859 * 275.89284 * 13 4 2 15 15 C 1.50706 * 109.46766 * 179.97438 * 14 13 4 16 16 C 1.35316 * 126.12217 * 85.03187 * 15 14 13 17 17 C 1.39871 * 107.91827 * 180.24187 * 16 15 14 18 18 N 1.30845 * 108.19868 * 359.54769 * 17 16 15 19 19 N 1.34939 * 126.12790 * 264.99998 * 15 14 13 20 20 C 1.46506 * 126.03760 * 0.02562 * 19 15 14 21 21 H 1.08998 * 109.47043 * 306.31034 * 1 2 3 22 22 H 1.08993 * 109.47080 * 66.31438 * 1 2 3 23 23 H 1.09001 * 109.46902 * 186.31808 * 1 2 3 24 24 H 1.09000 * 109.47346 * 240.00181 * 2 1 3 25 25 H 1.09002 * 109.46983 * 182.79875 * 3 2 1 26 26 H 1.09005 * 109.47534 * 302.79753 * 3 2 1 27 27 H 1.08998 * 109.47263 * 62.80107 * 3 2 1 28 28 H 0.97000 * 119.99203 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.46872 * 155.89610 * 13 4 2 30 30 H 1.09001 * 109.47162 * 35.89599 * 13 4 2 31 31 H 1.09003 * 109.47113 * 60.00473 * 14 13 4 32 32 H 1.09001 * 109.47490 * 300.00113 * 14 13 4 33 33 H 1.07996 * 126.04106 * 359.96959 * 16 15 14 34 34 H 1.07998 * 125.90528 * 179.73443 * 17 16 15 35 35 H 1.08993 * 109.47057 * 90.00275 * 20 19 15 36 36 H 1.09003 * 109.46604 * 210.00052 * 20 19 15 37 37 H 1.09001 * 109.47064 * 329.99433 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 1.6778 -0.2297 2.4398 6 1 0.6972 0.1896 2.6105 7 6 2.5927 -0.3016 3.4812 8 7 2.1757 -0.5272 4.7092 9 14 4.4157 -0.0783 3.1401 10 1 4.7944 1.3373 3.3811 11 1 5.1997 -0.9608 4.0411 12 1 4.7020 -0.4337 1.7270 13 6 2.8713 -1.8741 1.0617 14 6 1.9963 -3.1128 0.8591 15 6 2.8737 -4.3302 0.7202 16 6 3.3776 -5.0703 1.7348 17 6 4.1399 -6.1021 1.1775 18 7 4.0872 -5.9914 -0.1252 19 7 3.2969 -4.8779 -0.4381 20 6 2.9851 -4.3935 -1.7852 21 1 -0.3633 0.6085 0.8281 22 1 -0.3633 0.4128 -0.9410 23 1 -0.3633 -1.0214 0.1131 24 1 1.8934 -0.5138 -0.8900 25 1 3.1288 1.4430 -0.0502 26 1 1.6362 1.9707 -0.8639 27 1 1.7182 1.9417 0.9140 28 1 2.8151 -0.5771 5.4369 29 1 3.4693 -1.9955 1.9649 30 1 3.5311 -1.7509 0.2029 31 1 1.3983 -2.9914 -0.0441 32 1 1.3365 -3.2360 1.7179 33 1 3.2225 -4.8927 2.7887 34 1 4.6765 -6.8611 1.7273 35 1 3.7427 -3.6747 -2.0972 36 1 2.9733 -5.2336 -2.4796 37 1 2.0072 -3.9120 -1.7808 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230761160.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:25 Heat of formation + Delta-G solvation = 93.489543 kcal Electronic energy + Delta-G solvation = -17463.720850 eV Core-core repulsion = 14857.583743 eV Total energy + Delta-G solvation = -2606.137107 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.86324 -36.96878 -33.40360 -32.67047 -32.09006 -29.99866 -27.37314 -26.48061 -26.35655 -24.14025 -22.34221 -20.78587 -19.46380 -19.29714 -16.55429 -16.28191 -15.20462 -14.93893 -14.77441 -14.13226 -13.82850 -13.40684 -13.08403 -12.77678 -12.66792 -12.38469 -12.20130 -12.13162 -11.89328 -11.43758 -11.40669 -11.13248 -10.71891 -10.47334 -10.36593 -10.35188 -10.03126 -9.80794 -9.43782 -8.95112 -8.44367 -8.13772 -6.85214 -6.09036 -3.35094 2.20720 2.81522 3.19126 3.37944 3.50492 3.55061 4.54496 4.76910 4.77870 5.22059 5.25756 5.33932 5.38601 5.46026 5.58206 5.75610 5.93381 6.02185 6.11592 6.16606 6.19416 6.22152 6.29315 6.46604 6.53042 6.60217 6.66613 6.80190 6.88596 6.99807 7.06935 7.11358 7.37260 8.00695 8.02732 8.38664 8.99169 9.72158 10.14365 11.06384 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.020785 B = 0.009419 C = 0.007500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.789297 B = 2971.872484 C = 3732.237730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.164 3.836 3 C -0.155 4.155 4 N -0.596 5.596 5 C -0.274 4.274 6 H 0.079 0.921 7 C 0.050 3.950 8 N -0.877 5.877 9 Si 0.842 3.158 10 H -0.292 1.292 11 H -0.294 1.294 12 H -0.264 1.264 13 C 0.164 3.836 14 C -0.080 4.080 15 C 0.106 3.894 16 C -0.280 4.280 17 C 0.045 3.955 18 N -0.316 5.316 19 N -0.379 5.379 20 C 0.103 3.897 21 H 0.057 0.943 22 H 0.037 0.963 23 H 0.048 0.952 24 H 0.046 0.954 25 H 0.041 0.959 26 H 0.037 0.963 27 H 0.064 0.936 28 H 0.263 0.737 29 H 0.061 0.939 30 H 0.030 0.970 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.147 0.853 34 H 0.178 0.822 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.303 -5.065 -10.401 11.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.058 3.942 3 C -0.214 4.214 4 N -0.317 5.317 5 C -0.402 4.402 6 H 0.096 0.904 7 C -0.153 4.153 8 N -0.516 5.516 9 Si 0.669 3.331 10 H -0.219 1.219 11 H -0.220 1.220 12 H -0.189 1.189 13 C 0.036 3.964 14 C -0.122 4.122 15 C -0.022 4.022 16 C -0.309 4.309 17 C -0.141 4.141 18 N -0.138 5.138 19 N -0.162 5.162 20 C -0.039 4.039 21 H 0.076 0.924 22 H 0.056 0.944 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.165 0.835 34 H 0.195 0.805 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.670 -5.513 -11.474 12.747 hybrid contribution 0.936 0.518 0.802 1.337 sum 1.606 -4.995 -10.673 11.892 Atomic orbital electron populations 1.22137 0.97801 1.01276 0.99927 1.20404 0.92839 0.91926 0.89060 1.22146 1.00152 0.98226 1.00872 1.44228 1.59207 1.25880 1.02381 1.18557 0.97679 1.40107 0.83860 0.90397 1.25415 0.97229 0.97854 0.94767 1.70076 1.35030 1.45885 1.00579 0.87402 0.89091 0.77922 0.78692 1.21939 1.22044 1.18910 1.21077 0.91440 0.84625 0.99221 1.21179 0.97426 0.90446 1.03125 1.21481 0.98256 0.96661 0.85838 1.21318 1.09028 1.00472 1.00098 1.23751 0.99463 0.99369 0.91481 1.77230 1.15615 1.04791 1.16119 1.48437 1.39656 1.22274 1.05814 1.21759 1.01898 1.00145 0.80073 0.92401 0.94437 0.93330 0.93536 0.93975 0.94373 0.91680 0.92718 0.92045 0.95192 0.91869 0.88541 0.83524 0.80463 0.91093 0.89820 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.03 37.16 0.34 -2.25 16 2 C 0.16 3.04 3.36 -67.93 -0.23 2.81 16 3 C -0.16 -2.80 9.21 37.16 0.34 -2.46 16 4 N -0.60 -13.11 2.02 -165.66 -0.33 -13.45 16 5 C -0.27 -7.13 8.50 -15.06 -0.13 -7.26 16 6 H 0.08 2.19 7.11 -52.49 -0.37 1.82 16 7 C 0.05 1.36 4.98 -17.43 -0.09 1.28 16 8 N -0.88 -25.57 13.97 55.49 0.78 -24.79 16 9 Si 0.84 21.17 26.29 -169.99 -4.47 16.70 16 10 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 11 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 12 H -0.26 -6.43 5.95 56.52 0.34 -6.09 16 13 C 0.16 3.40 3.83 -4.04 -0.02 3.38 16 14 C -0.08 -1.44 5.82 -27.88 -0.16 -1.60 16 15 C 0.11 1.86 6.18 -82.26 -0.51 1.35 16 16 C -0.28 -4.89 10.72 -40.01 -0.43 -5.32 16 17 C 0.04 0.71 12.03 -17.36 -0.21 0.50 16 18 N -0.32 -5.42 12.58 30.63 0.39 -5.04 16 19 N -0.38 -6.18 4.01 -63.88 -0.26 -6.44 16 20 C 0.10 1.22 11.27 59.85 0.67 1.90 16 21 H 0.06 1.08 7.25 -51.93 -0.38 0.70 16 22 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.05 0.78 7.88 -51.93 -0.41 0.37 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.30 7.58 -51.93 -0.39 0.90 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.06 1.43 4.57 -51.93 -0.24 1.20 16 30 H 0.03 0.59 8.05 -51.93 -0.42 0.18 16 31 H 0.06 1.01 6.95 -51.93 -0.36 0.65 16 32 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 33 H 0.15 2.50 8.06 -52.49 -0.42 2.08 16 34 H 0.18 2.16 8.06 -52.49 -0.42 1.74 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 0.90 6.97 -51.93 -0.36 0.53 16 LS Contribution 301.75 15.07 4.55 4.55 Total: -1.00 -30.31 301.75 -5.70 -36.01 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.94 Total: 0.14 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -0.41 Total: -7.68 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.57 Total: -49.71 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.47 Total: 16.70 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.31 -5.70 -36.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230761160.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.497 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds