Wall clock time and date at job start Mon Mar 30 2020 03:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46752 * 2 1 4 4 N 1.46496 * 109.47591 * 119.99778 * 2 1 3 5 5 C 1.36940 * 119.99748 * 300.58742 * 4 2 1 6 6 H 1.08000 * 120.00295 * 36.00934 * 5 4 2 7 7 C 1.38812 * 119.99590 * 215.99804 * 5 4 2 8 8 N 1.31629 * 119.99709 * 214.45953 * 7 5 4 9 9 Si 1.86800 * 120.00188 * 34.46352 * 7 5 4 10 10 H 1.48501 * 109.46679 * 95.18467 * 9 7 5 11 11 H 1.48501 * 109.47168 * 215.18501 * 9 7 5 12 12 H 1.48499 * 109.47029 * 335.18562 * 9 7 5 13 13 C 1.46502 * 119.99929 * 120.58471 * 4 2 1 14 14 C 1.53000 * 109.46859 * 275.89284 * 13 4 2 15 15 C 1.50706 * 109.46766 * 179.97438 * 14 13 4 16 16 C 1.35316 * 126.12217 * 85.03187 * 15 14 13 17 17 C 1.39871 * 107.91827 * 180.24187 * 16 15 14 18 18 N 1.30845 * 108.19868 * 359.54769 * 17 16 15 19 19 N 1.34939 * 126.12790 * 264.99998 * 15 14 13 20 20 C 1.46506 * 126.03760 * 0.02562 * 19 15 14 21 21 H 1.08998 * 109.47043 * 306.31034 * 1 2 3 22 22 H 1.08993 * 109.47080 * 66.31438 * 1 2 3 23 23 H 1.09001 * 109.46902 * 186.31808 * 1 2 3 24 24 H 1.09000 * 109.47346 * 240.00181 * 2 1 3 25 25 H 1.09002 * 109.46983 * 182.79875 * 3 2 1 26 26 H 1.09005 * 109.47534 * 302.79753 * 3 2 1 27 27 H 1.08998 * 109.47263 * 62.80107 * 3 2 1 28 28 H 0.97000 * 119.99203 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.46872 * 155.89610 * 13 4 2 30 30 H 1.09001 * 109.47162 * 35.89599 * 13 4 2 31 31 H 1.09003 * 109.47113 * 60.00473 * 14 13 4 32 32 H 1.09001 * 109.47490 * 300.00113 * 14 13 4 33 33 H 1.07996 * 126.04106 * 359.96959 * 16 15 14 34 34 H 1.07998 * 125.90528 * 179.73443 * 17 16 15 35 35 H 1.08993 * 109.47057 * 90.00275 * 20 19 15 36 36 H 1.09003 * 109.46604 * 210.00052 * 20 19 15 37 37 H 1.09001 * 109.47064 * 329.99433 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 1.6778 -0.2297 2.4398 6 1 0.6972 0.1896 2.6105 7 6 2.5927 -0.3016 3.4812 8 7 2.1757 -0.5272 4.7092 9 14 4.4157 -0.0783 3.1401 10 1 4.7944 1.3373 3.3811 11 1 5.1997 -0.9608 4.0411 12 1 4.7020 -0.4337 1.7270 13 6 2.8713 -1.8741 1.0617 14 6 1.9963 -3.1128 0.8591 15 6 2.8737 -4.3302 0.7202 16 6 3.3776 -5.0703 1.7348 17 6 4.1399 -6.1021 1.1775 18 7 4.0872 -5.9914 -0.1252 19 7 3.2969 -4.8779 -0.4381 20 6 2.9851 -4.3935 -1.7852 21 1 -0.3633 0.6085 0.8281 22 1 -0.3633 0.4128 -0.9410 23 1 -0.3633 -1.0214 0.1131 24 1 1.8934 -0.5138 -0.8900 25 1 3.1288 1.4430 -0.0502 26 1 1.6362 1.9707 -0.8639 27 1 1.7182 1.9417 0.9140 28 1 2.8151 -0.5771 5.4369 29 1 3.4693 -1.9955 1.9649 30 1 3.5311 -1.7509 0.2029 31 1 1.3983 -2.9914 -0.0441 32 1 1.3365 -3.2360 1.7179 33 1 3.2225 -4.8927 2.7887 34 1 4.6765 -6.8611 1.7273 35 1 3.7427 -3.6747 -2.0972 36 1 2.9733 -5.2336 -2.4796 37 1 2.0072 -3.9120 -1.7808 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230761160.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:24 Heat of formation + Delta-G solvation = 75.247255 kcal Electronic energy + Delta-G solvation = -17464.511894 eV Core-core repulsion = 14857.583743 eV Total energy + Delta-G solvation = -2606.928152 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.12963 -38.63553 -34.74954 -34.26215 -33.71667 -31.58987 -28.94789 -27.76567 -27.54610 -25.96619 -23.93697 -22.02384 -21.16018 -20.57266 -18.36602 -17.68205 -16.80092 -16.55977 -16.22133 -15.55410 -15.21047 -14.91986 -14.61890 -14.21572 -14.16799 -13.98600 -13.61468 -13.40417 -13.16810 -12.96722 -12.87122 -12.68361 -12.61682 -12.15699 -12.01372 -11.78766 -11.58511 -11.39796 -11.26133 -10.51945 -10.17840 -9.46178 -8.69861 -8.20858 -5.40957 0.90918 1.34751 1.44896 1.50710 1.68722 1.89633 2.48077 2.98342 3.37689 3.73571 3.93120 4.08379 4.31353 4.36797 4.39398 4.48092 4.56227 4.65057 4.69672 4.73173 4.79734 4.86608 4.98169 4.98616 5.14002 5.17380 5.21999 5.30869 5.38247 5.60392 5.67164 5.76402 6.00097 6.13834 6.30691 6.76255 7.07572 7.74768 8.17364 8.99189 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.020785 B = 0.009419 C = 0.007500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.789297 B = 2971.872484 C = 3732.237730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.155 3.845 3 C -0.151 4.151 4 N -0.605 5.605 5 C -0.246 4.246 6 H 0.049 0.951 7 C 0.000 4.000 8 N -0.925 5.925 9 Si 0.895 3.105 10 H -0.301 1.301 11 H -0.303 1.303 12 H -0.248 1.248 13 C 0.163 3.837 14 C -0.061 4.061 15 C 0.094 3.906 16 C -0.301 4.301 17 C 0.046 3.954 18 N -0.331 5.331 19 N -0.378 5.378 20 C 0.091 3.909 21 H 0.031 0.969 22 H 0.073 0.927 23 H 0.045 0.955 24 H 0.078 0.922 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.035 0.965 28 H 0.260 0.740 29 H 0.031 0.969 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.140 0.860 34 H 0.210 0.790 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.668 -5.523 -13.385 14.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.050 3.950 3 C -0.210 4.210 4 N -0.327 5.327 5 C -0.376 4.376 6 H 0.067 0.933 7 C -0.198 4.198 8 N -0.568 5.568 9 Si 0.723 3.277 10 H -0.229 1.229 11 H -0.231 1.231 12 H -0.172 1.172 13 C 0.037 3.963 14 C -0.103 4.103 15 C -0.035 4.035 16 C -0.331 4.331 17 C -0.139 4.139 18 N -0.153 5.153 19 N -0.161 5.161 20 C -0.049 4.049 21 H 0.050 0.950 22 H 0.092 0.908 23 H 0.064 0.936 24 H 0.097 0.903 25 H 0.054 0.946 26 H 0.092 0.908 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.158 0.842 34 H 0.226 0.774 35 H 0.101 0.899 36 H 0.119 0.881 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.042 -5.973 -14.529 15.743 hybrid contribution 0.743 0.644 1.629 1.902 sum 1.786 -5.329 -12.900 14.071 Atomic orbital electron populations 1.22039 0.96610 1.00898 1.00779 1.20706 0.93691 0.92167 0.88431 1.22102 0.99794 0.98035 1.01065 1.44368 1.59296 1.26891 1.02184 1.18428 0.96111 1.37574 0.85481 0.93349 1.25825 1.00083 0.99198 0.94707 1.70159 1.35857 1.49273 1.01477 0.86551 0.85353 0.76771 0.79004 1.22925 1.23097 1.17206 1.21016 0.91628 0.85253 0.98442 1.20829 0.96706 0.89500 1.03261 1.21362 0.98653 0.96763 0.86734 1.21511 1.09906 1.01525 1.00131 1.24226 0.98955 0.99449 0.91236 1.77197 1.16080 1.05384 1.16627 1.48767 1.38847 1.21691 1.06793 1.22148 1.03171 1.01286 0.78313 0.95024 0.90846 0.93579 0.90341 0.94638 0.90769 0.94548 0.93075 0.95040 0.93478 0.89311 0.91004 0.84229 0.77382 0.89940 0.88107 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.53 9.03 71.98 0.65 -3.88 16 2 C 0.16 5.27 3.36 44.99 0.15 5.42 16 3 C -0.15 -5.07 9.21 71.98 0.66 -4.40 16 4 N -0.61 -25.84 2.02 -678.03 -1.37 -27.21 16 5 C -0.25 -12.98 8.50 84.03 0.71 -12.26 16 6 H 0.05 2.82 7.11 -2.91 -0.02 2.80 16 7 C 0.00 0.00 4.98 84.86 0.42 0.42 16 8 N -0.93 -55.89 13.97 21.65 0.30 -55.59 16 9 Si 0.90 44.58 26.29 68.60 1.80 46.38 16 10 H -0.30 -15.24 7.11 99.48 0.71 -14.54 16 11 H -0.30 -15.47 7.11 99.48 0.71 -14.76 16 12 H -0.25 -11.52 5.95 99.48 0.59 -10.93 16 13 C 0.16 6.50 3.83 86.38 0.33 6.83 16 14 C -0.06 -2.11 5.82 29.85 0.17 -1.94 16 15 C 0.09 3.15 6.18 41.41 0.26 3.40 16 16 C -0.30 -10.31 10.72 21.99 0.24 -10.08 16 17 C 0.05 1.39 12.03 85.24 1.03 2.41 16 18 N -0.33 -10.60 12.58 -57.02 -0.72 -11.31 16 19 N -0.38 -11.34 4.01 -356.02 -1.43 -12.77 16 20 C 0.09 1.82 11.27 127.77 1.44 3.26 16 21 H 0.03 1.14 7.25 -2.39 -0.02 1.12 16 22 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.08 2.22 7.88 -2.39 -0.02 2.20 16 25 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 27 H 0.04 1.41 7.58 -2.39 -0.02 1.39 16 28 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 29 H 0.03 1.44 4.57 -2.39 -0.01 1.43 16 30 H 0.05 1.72 8.05 -2.39 -0.02 1.70 16 31 H 0.09 2.56 6.95 -2.39 -0.02 2.54 16 32 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.14 4.85 8.06 -2.91 -0.02 4.83 16 34 H 0.21 4.60 8.06 -2.91 -0.02 4.58 16 35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.10 1.70 6.97 -2.39 -0.02 1.68 16 Total: -1.00 -66.27 301.75 5.57 -60.70 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.91 Total: 10.61 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 6.06 Total: -10.80 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -3.21 Total: -106.88 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.80 Total: 46.38 kcal Total: -66.27 5.57 -60.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230761160.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.946 kcal (2) G-P(sol) polarization free energy of solvation -66.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds