Wall clock time and date at job start Mon Mar 30 2020 03:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47086 * 2 1 4 4 N 1.46900 * 109.47018 * 119.99744 * 2 1 3 5 5 C 1.46904 * 110.99845 * 85.00319 * 4 2 1 6 6 C 1.50698 * 109.47100 * 179.97438 * 5 4 2 7 7 C 1.34675 * 125.98512 * 95.00051 * 6 5 4 8 8 N 1.36879 * 106.81522 * 179.97438 * 7 6 5 9 9 C 1.46499 * 126.39849 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.47021 * 89.99861 * 9 8 7 11 11 C 1.50702 * 109.47160 * 180.02562 * 10 9 8 12 12 H 1.08007 * 119.99958 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00227 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99950 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00070 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47481 * 59.99813 * 15 13 11 17 17 H 1.48497 * 109.47210 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47063 * 299.99927 * 15 13 11 19 19 C 1.35041 * 107.20828 * 0.02562 * 8 7 6 20 20 N 1.30503 * 108.69928 * 359.97438 * 19 8 7 21 21 H 1.09001 * 109.47360 * 59.99780 * 1 2 3 22 22 H 1.09002 * 109.47055 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47011 * 299.99643 * 1 2 3 24 24 H 1.08999 * 109.47011 * 240.00357 * 2 1 3 25 25 H 1.08996 * 109.47110 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47200 * 300.00318 * 3 2 1 27 27 H 1.08999 * 109.46888 * 59.99734 * 3 2 1 28 28 H 1.00893 * 111.00374 * 321.04514 * 4 2 1 29 29 H 1.09002 * 109.47097 * 59.99427 * 5 4 2 30 30 H 1.09000 * 109.46789 * 299.99952 * 5 4 2 31 31 H 1.07999 * 126.59056 * 359.73822 * 7 6 5 32 32 H 1.08996 * 109.47327 * 210.00288 * 9 8 7 33 33 H 1.09002 * 109.46825 * 330.00335 * 9 8 7 34 34 H 1.08996 * 109.47418 * 300.00371 * 10 9 8 35 35 H 1.09002 * 109.46934 * 60.00540 * 10 9 8 36 36 H 0.96998 * 119.99968 * 179.97438 * 14 13 11 37 37 H 1.07997 * 125.65385 * 180.02562 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0825 -2.1437 0.9807 6 6 2.5885 -2.8185 2.2295 7 6 1.8278 -3.3558 3.2024 8 7 2.6853 -3.8598 4.1427 9 6 2.3108 -4.5396 5.3852 10 6 2.1920 -6.0431 5.1281 11 6 1.8062 -6.7424 6.4061 12 1 1.6599 -6.1714 7.3111 13 6 1.6400 -8.1110 6.4200 14 7 1.8177 -8.8063 5.3179 15 14 1.1611 -8.9777 8.0040 16 1 -0.1439 -8.4530 8.4803 17 1 1.0471 -10.4371 7.7547 18 1 2.1999 -8.7319 9.0363 19 6 3.9409 -3.6124 3.7118 20 7 3.8753 -2.9896 2.5669 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.4496 -0.4721 2.0023 29 1 2.7588 -2.3575 0.1531 30 1 1.0871 -2.5187 0.7425 31 1 0.7486 -3.3804 3.2361 32 1 3.0741 -4.3596 6.1422 33 1 1.3533 -4.1542 5.7358 34 1 1.4288 -6.2232 4.3711 35 1 3.1495 -6.4285 4.7775 36 1 1.7011 -9.7692 5.3278 37 1 4.8491 -3.8854 4.2286 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232747060.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:24 Heat of formation + Delta-G solvation = 23.031659 kcal Electronic energy + Delta-G solvation = -16161.925719 eV Core-core repulsion = 13552.733329 eV Total energy + Delta-G solvation = -2609.192390 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.90359 -38.27583 -36.39308 -34.60754 -32.94438 -31.24835 -29.84468 -27.93816 -27.08083 -25.51788 -23.58410 -21.81675 -21.63895 -20.95925 -18.81101 -17.55144 -16.74382 -16.47272 -16.17894 -15.67595 -15.59817 -15.08262 -14.57985 -14.49894 -14.41416 -14.17253 -13.69055 -13.30070 -13.11400 -12.91398 -12.85981 -12.70127 -12.39107 -12.09731 -12.09127 -11.92939 -11.68690 -11.47010 -10.81920 -10.62485 -10.33025 -9.38830 -9.15426 -8.26716 -6.40414 1.21433 1.41730 1.43837 1.51932 2.05117 2.16664 2.40328 3.08297 3.42962 3.71052 3.97314 4.05511 4.11118 4.24378 4.36526 4.42880 4.45120 4.49417 4.68608 4.71219 4.81866 4.88005 5.01015 5.03488 5.11407 5.26688 5.31143 5.34791 5.46032 5.60985 5.68667 5.86834 6.03454 6.20402 6.38071 6.54669 6.76303 7.23656 7.30905 8.85123 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.051010 B = 0.003849 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.780313 B = 7273.584736 C = 7458.076761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.075 3.925 3 C -0.134 4.134 4 N -0.687 5.687 5 C 0.157 3.843 6 C -0.019 4.019 7 C -0.056 4.056 8 N -0.448 5.448 9 C 0.120 3.880 10 C 0.022 3.978 11 C -0.545 4.545 12 H 0.075 0.925 13 C 0.002 3.998 14 N -0.933 5.933 15 Si 0.970 3.030 16 H -0.264 1.264 17 H -0.288 1.288 18 H -0.264 1.264 19 C 0.168 3.832 20 N -0.514 5.514 21 H 0.072 0.928 22 H 0.050 0.950 23 H 0.059 0.941 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.342 0.658 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.184 0.816 32 H 0.101 0.899 33 H 0.095 0.905 34 H -0.009 1.009 35 H -0.007 1.007 36 H 0.265 0.735 37 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.914 15.806 -6.188 17.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.034 4.034 3 C -0.192 4.192 4 N -0.319 5.319 5 C 0.027 3.973 6 C -0.149 4.149 7 C -0.191 4.191 8 N -0.128 5.128 9 C -0.001 4.001 10 C -0.016 4.016 11 C -0.583 4.583 12 H 0.093 0.907 13 C -0.196 4.196 14 N -0.572 5.572 15 Si 0.794 3.206 16 H -0.189 1.189 17 H -0.214 1.214 18 H -0.188 1.188 19 C -0.114 4.114 20 N -0.234 5.234 21 H 0.091 0.909 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.092 0.908 25 H 0.067 0.933 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.160 0.840 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.201 0.799 32 H 0.120 0.880 33 H 0.114 0.886 34 H 0.009 0.991 35 H 0.012 0.988 36 H 0.073 0.927 37 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -1.614 15.925 -6.732 17.365 hybrid contribution -1.669 -1.548 1.103 2.530 sum -3.283 14.377 -5.629 15.785 Atomic orbital electron populations 1.22460 0.96234 1.01895 1.03017 1.21636 0.93369 0.95739 0.92663 1.21724 1.00981 0.94569 1.01953 1.60546 1.58071 1.06847 1.06411 1.19950 0.98548 0.86801 0.91954 1.20774 0.89160 1.05925 0.99063 1.22823 0.97899 1.05920 0.92485 1.45869 1.07222 1.41233 1.18509 1.22088 1.02702 0.92813 0.82535 1.19234 0.95484 0.90375 0.96495 1.21471 1.47699 0.92840 0.96277 0.90697 1.25998 0.94979 0.98674 0.99983 1.70108 1.50073 1.07532 1.29522 0.85425 0.79379 0.76877 0.78941 1.18861 1.21367 1.18842 1.25342 0.89515 1.02129 0.94417 1.70097 1.21752 1.18729 1.12786 0.90908 0.93089 0.92208 0.90797 0.93299 0.90999 0.92819 0.84013 0.91074 0.92901 0.79930 0.88030 0.88650 0.99072 0.98821 0.92659 0.76445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 9.16 71.98 0.66 -2.01 16 2 C 0.08 1.39 3.20 44.92 0.14 1.53 16 3 C -0.13 -2.23 9.52 71.98 0.69 -1.55 16 4 N -0.69 -16.32 6.24 -495.56 -3.09 -19.41 16 5 C 0.16 4.21 6.02 85.56 0.52 4.73 16 6 C -0.02 -0.64 6.60 41.39 0.27 -0.37 16 7 C -0.06 -1.85 11.49 83.09 0.95 -0.90 16 8 N -0.45 -15.99 2.75 -529.07 -1.46 -17.44 16 9 C 0.12 4.39 6.09 86.38 0.53 4.92 16 10 C 0.02 1.08 5.30 29.85 0.16 1.24 16 11 C -0.54 -28.52 9.11 25.60 0.23 -28.29 16 12 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 13 C 0.00 0.13 5.46 84.65 0.46 0.59 16 14 N -0.93 -55.21 13.29 21.45 0.28 -54.92 16 15 Si 0.97 41.88 29.54 68.60 2.03 43.91 16 16 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 17 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 18 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 19 C 0.17 5.97 12.56 180.26 2.26 8.23 16 20 N -0.51 -19.33 11.25 -188.32 -2.12 -21.45 16 21 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.05 0.81 7.45 -2.39 -0.02 0.80 16 23 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 24 H 0.07 1.40 7.80 -2.39 -0.02 1.38 16 25 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.34 7.77 8.46 -89.70 -0.76 7.01 16 29 H 0.07 2.01 8.06 -2.39 -0.02 1.99 16 30 H 0.05 1.24 7.43 -2.39 -0.02 1.22 16 31 H 0.18 5.15 8.06 -2.91 -0.02 5.13 16 32 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 33 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 34 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 35 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 36 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 37 H 0.22 6.41 8.06 -2.91 -0.02 6.39 16 Total: -1.00 -64.42 313.53 2.79 -61.63 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.27 Total: 19.58 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: 6.88 Total: -11.88 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -6.38 Total: -113.23 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -64.42 2.79 -61.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232747060.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.661 kcal (2) G-P(sol) polarization free energy of solvation -64.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds