Wall clock time and date at job start Mon Mar 30 2020 03:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30846 * 125.89606 * 2 1 4 4 N 1.40087 * 108.20143 * 180.02562 * 3 2 1 5 5 C 1.46503 * 126.03677 * 180.02562 * 4 3 2 6 6 C 1.34946 * 107.92579 * 0.26115 * 4 3 2 7 7 C 1.35319 * 107.74823 * 359.57678 * 6 4 3 8 8 C 1.50700 * 126.04170 * 180.15680 * 7 6 4 9 9 H 1.09003 * 109.46425 * 137.27781 * 8 7 6 10 10 C 1.52996 * 109.47251 * 257.27484 * 8 7 6 11 11 C 1.50702 * 109.47005 * 186.42869 * 10 8 7 12 12 H 1.07992 * 120.00028 * 5.55282 * 11 10 8 13 13 C 1.37872 * 119.99880 * 185.54743 * 11 10 8 14 14 N 1.31518 * 119.99874 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 120.00228 * 0.02562 * 13 11 10 16 16 H 1.48505 * 109.46747 * 90.00101 * 15 13 11 17 17 H 1.48493 * 109.47151 * 209.99888 * 15 13 11 18 18 H 1.48499 * 109.46927 * 330.00499 * 15 13 11 19 19 N 1.46894 * 109.46991 * 17.27984 * 8 7 6 20 20 C 1.46897 * 111.00059 * 161.99685 * 19 8 7 21 21 C 1.46904 * 111.00013 * 285.94714 * 19 8 7 22 22 H 1.08997 * 109.47564 * 89.97365 * 1 2 3 23 23 H 1.08998 * 109.47125 * 209.97892 * 1 2 3 24 24 H 1.09009 * 109.47096 * 329.97448 * 1 2 3 25 25 H 1.09003 * 109.47207 * 90.01737 * 5 4 3 26 26 H 1.09000 * 109.46618 * 330.02037 * 5 4 3 27 27 H 1.08997 * 109.46715 * 210.02339 * 5 4 3 28 28 H 1.08006 * 126.12764 * 179.73903 * 6 4 3 29 29 H 1.09002 * 109.47559 * 306.43310 * 10 8 7 30 30 H 1.09001 * 109.46961 * 66.43256 * 10 8 7 31 31 H 0.97002 * 119.99654 * 179.97438 * 14 13 11 32 32 H 1.09000 * 109.47737 * 76.33850 * 20 19 8 33 33 H 1.09007 * 109.47238 * 196.34214 * 20 19 8 34 34 H 1.08998 * 109.47283 * 316.33830 * 20 19 8 35 35 H 1.09001 * 109.46953 * 50.56724 * 21 19 8 36 36 H 1.08997 * 109.47302 * 170.56241 * 21 19 8 37 37 H 1.08995 * 109.47102 * 290.56912 * 21 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0600 0.0000 4 7 3.6087 0.6342 -0.0006 5 6 4.7899 1.5008 -0.0003 6 6 3.6142 -0.7153 -0.0068 7 6 2.3271 -1.1330 -0.0005 8 6 1.8599 -2.5657 -0.0008 9 1 1.0333 -2.6783 0.7008 10 6 1.3919 -2.9493 -1.4060 11 6 0.7794 -4.3259 -1.3731 12 1 0.6470 -4.8356 -0.4303 13 6 0.3878 -4.9343 -2.5467 14 7 -0.1473 -6.1354 -2.5180 15 14 0.6172 -4.0528 -4.1777 16 1 1.9503 -4.3892 -4.7388 17 1 -0.4418 -4.4825 -5.1258 18 1 0.5255 -2.5860 -3.9647 19 7 2.9676 -3.4420 0.4028 20 6 2.4706 -4.7580 0.8260 21 6 3.9544 -3.5745 -0.6774 22 1 -0.3634 0.0005 -1.0276 23 1 -0.3633 -0.8902 0.5135 24 1 -0.3634 0.8898 0.5143 25 1 5.0833 1.7148 1.0275 26 1 4.5561 2.4338 -0.5131 27 1 5.6090 0.9987 -0.5150 28 1 4.4891 -1.3485 -0.0128 29 1 0.6497 -2.2295 -1.7510 30 1 2.2439 -2.9470 -2.0859 31 1 -0.4231 -6.5633 -3.3437 32 1 2.1994 -5.3437 -0.0524 33 1 3.2493 -5.2784 1.3836 34 1 1.5941 -4.6283 1.4609 35 1 4.2335 -2.5845 -1.0380 36 1 4.8396 -4.0866 -0.3001 37 1 3.5224 -4.1507 -1.4955 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259627253.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:07 Heat of formation + Delta-G solvation = 93.270673 kcal Electronic energy + Delta-G solvation = -17661.748593 eV Core-core repulsion = 15055.601996 eV Total energy + Delta-G solvation = -2606.146598 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.91915 -37.44397 -33.67435 -32.59554 -30.61998 -29.69893 -28.63103 -26.87184 -26.15792 -24.32344 -22.05804 -20.70243 -19.66071 -18.64617 -16.96219 -16.09656 -15.25758 -14.87345 -14.50679 -13.95869 -13.69264 -13.61127 -13.25352 -13.00794 -12.73754 -12.33366 -12.03136 -11.91177 -11.71941 -11.48140 -11.18101 -10.98487 -10.82214 -10.64830 -10.44796 -10.18232 -10.04452 -9.69486 -9.07110 -8.77603 -8.55894 -7.79742 -7.27374 -6.06450 -4.03311 2.28392 2.85184 3.25179 3.27823 3.36767 3.42551 4.43556 4.71899 4.85613 5.18988 5.25752 5.29352 5.31538 5.40622 5.64938 5.85827 5.90994 6.04366 6.15289 6.23067 6.30594 6.37199 6.44113 6.54693 6.62564 6.66415 6.79184 7.08308 7.11890 7.25250 7.25629 7.43899 7.74964 7.92486 7.97276 8.16113 8.48925 8.96789 9.56258 11.04932 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.024951 B = 0.008484 C = 0.007715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.936210 B = 3299.415430 C = 3628.638743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.080 3.920 3 N -0.311 5.311 4 N -0.390 5.390 5 C 0.109 3.891 6 C 0.054 3.946 7 C -0.202 4.202 8 C 0.167 3.833 9 H 0.078 0.922 10 C -0.034 4.034 11 C -0.524 4.524 12 H 0.087 0.913 13 C 0.071 3.929 14 N -0.901 5.901 15 Si 0.871 3.129 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.266 1.266 19 N -0.533 5.533 20 C 0.019 3.981 21 C 0.014 3.986 22 H 0.075 0.925 23 H 0.081 0.919 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.177 0.823 29 H 0.018 0.982 30 H 0.017 0.983 31 H 0.262 0.738 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.209 10.513 4.494 14.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.086 4.086 3 N -0.135 5.135 4 N -0.174 5.174 5 C -0.033 4.033 6 C -0.090 4.090 7 C -0.214 4.214 8 C 0.058 3.942 9 H 0.096 0.904 10 C -0.073 4.073 11 C -0.561 4.561 12 H 0.105 0.895 13 C -0.130 4.130 14 N -0.540 5.540 15 Si 0.699 3.301 16 H -0.205 1.205 17 H -0.215 1.215 18 H -0.190 1.190 19 N -0.256 5.256 20 C -0.129 4.129 21 C -0.135 4.135 22 H 0.094 0.906 23 H 0.100 0.900 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.194 0.806 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.559 11.944 4.795 15.457 hybrid contribution -0.135 -0.871 -1.740 1.950 sum 8.424 11.074 3.054 14.245 Atomic orbital electron populations 1.20171 0.86938 1.02859 1.03016 1.22171 0.96766 0.90289 0.99422 1.77162 0.86550 1.22876 1.26883 1.48259 1.05118 1.04921 1.59054 1.21685 0.84106 0.94826 1.02674 1.22537 0.99892 0.83781 1.02808 1.20205 0.91644 0.96412 1.13099 1.19914 0.91467 0.85234 0.97622 0.90424 1.20196 0.96407 0.97517 0.93149 1.21382 1.39712 0.99603 0.95446 0.89510 1.24971 0.94625 0.94612 0.98819 1.69902 1.42260 1.14096 1.27708 0.86901 0.77837 0.81000 0.84371 1.20534 1.21482 1.19045 1.62324 1.14127 1.12985 1.36171 1.22679 0.98242 0.90600 1.01392 1.22549 0.95456 1.00773 0.94717 0.90600 0.90047 0.91632 0.91389 0.89944 0.89996 0.80646 0.96420 0.96487 0.92788 0.90629 0.94046 0.92660 0.92404 0.93057 0.93369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.11 10.26 36.00 0.37 -0.74 16 2 C 0.08 1.46 7.22 -82.40 -0.59 0.87 16 3 N -0.31 -5.61 12.58 33.67 0.42 -5.19 16 4 N -0.39 -6.11 4.01 -68.16 -0.27 -6.39 16 5 C 0.11 1.10 11.47 59.85 0.69 1.79 16 6 C 0.05 0.89 9.68 -17.22 -0.17 0.72 16 7 C -0.20 -3.79 5.18 -105.05 -0.54 -4.34 16 8 C 0.17 3.38 2.11 -68.87 -0.15 3.23 16 9 H 0.08 1.62 7.25 -51.93 -0.38 1.25 16 10 C -0.03 -0.79 3.00 -27.88 -0.08 -0.88 16 11 C -0.52 -13.91 7.48 -34.44 -0.26 -14.17 16 12 H 0.09 2.41 5.45 -52.49 -0.29 2.13 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -26.76 13.96 55.43 0.77 -25.99 16 15 Si 0.87 21.57 27.36 -169.99 -4.65 16.92 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.27 -6.48 6.70 56.52 0.38 -6.10 16 19 N -0.53 -10.13 4.65 -244.59 -1.14 -11.27 16 20 C 0.02 0.36 8.17 60.06 0.49 0.86 16 21 C 0.01 0.24 7.68 60.07 0.46 0.70 16 22 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 23 H 0.08 1.25 7.59 -51.93 -0.39 0.85 16 24 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.18 2.56 5.79 -52.48 -0.30 2.25 16 29 H 0.02 0.43 7.58 -51.93 -0.39 0.03 16 30 H 0.02 0.40 5.24 -51.93 -0.27 0.13 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.08 1.72 5.32 -51.93 -0.28 1.44 16 33 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.05 1.06 7.53 -51.93 -0.39 0.67 16 35 H 0.06 0.95 4.93 -51.93 -0.26 0.69 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.99 6.33 -51.93 -0.33 0.67 16 LS Contribution 289.50 15.07 4.36 4.36 Total: -1.00 -31.33 289.50 -5.78 -37.11 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.39 Total: 0.51 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 0.12 Total: -10.06 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: -0.21 Total: -48.83 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.65 Total: 16.92 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.33 -5.78 -37.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259627253.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.377 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds