Wall clock time and date at job start Mon Mar 30 2020 03:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 C 1.53005 * 109.47169 * 239.99743 * 2 1 3 5 5 N 1.46502 * 109.47261 * 295.00556 * 4 2 1 6 6 N 1.40079 * 126.04272 * 87.42752 * 5 4 2 7 7 C 1.30837 * 108.20605 * 179.97438 * 6 5 4 8 8 C 1.39868 * 108.20345 * 0.02562 * 7 6 5 9 9 C 1.34949 * 126.02747 * 267.11775 * 5 4 2 10 10 C 1.50692 * 126.13414 * 359.97438 * 9 5 4 11 11 H 1.09004 * 109.46964 * 335.19348 * 10 9 5 12 12 N 1.46901 * 109.47349 * 215.18993 * 10 9 5 13 13 C 1.52999 * 109.47324 * 95.19029 * 10 9 5 14 14 C 1.50704 * 109.47196 * 184.99903 * 13 10 9 15 15 H 1.07994 * 119.99788 * 0.02562 * 14 13 10 16 16 C 1.37880 * 119.99964 * 179.97438 * 14 13 10 17 17 N 1.31512 * 120.00097 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99842 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.46738 * 89.99779 * 18 16 14 20 20 H 1.48497 * 109.46796 * 209.99591 * 18 16 14 21 21 H 1.48493 * 109.47089 * 329.99850 * 18 16 14 22 22 H 1.08999 * 109.46788 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.46875 * 300.00242 * 1 2 3 24 24 H 1.08998 * 109.46859 * 60.00526 * 1 2 3 25 25 H 1.08999 * 109.46828 * 120.00026 * 2 1 3 26 26 H 1.09000 * 109.47094 * 59.99808 * 3 2 1 27 27 H 1.09000 * 109.47201 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47284 * 299.99747 * 3 2 1 29 29 H 1.09000 * 109.46752 * 54.99868 * 4 2 1 30 30 H 1.08999 * 109.47138 * 175.00113 * 4 2 1 31 31 H 1.07999 * 125.89498 * 179.97438 * 7 6 5 32 32 H 1.08000 * 126.04033 * 180.02562 * 8 7 6 33 33 H 1.00899 * 111.00177 * 173.92403 * 12 10 9 34 34 H 1.00896 * 111.00116 * 297.88635 * 12 10 9 35 35 H 1.08999 * 109.47115 * 305.00489 * 13 10 9 36 36 H 1.09004 * 109.46885 * 65.00048 * 13 10 9 37 37 H 0.96997 * 120.00082 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6524 -2.1329 -1.1906 6 7 0.4448 -2.6757 -1.6481 7 6 0.4656 -3.9647 -1.4252 8 6 1.6850 -4.2838 -0.8190 9 6 2.3983 -3.1408 -0.6916 10 6 3.7770 -3.0156 -0.0964 11 1 4.2681 -2.1303 -0.5004 12 7 4.5654 -4.2089 -0.4318 13 6 3.6665 -2.8883 1.4243 14 6 5.0334 -2.6403 2.0083 15 1 5.8947 -2.5791 1.3597 16 6 5.1842 -2.4904 3.3706 17 7 6.3770 -2.2734 3.8803 18 14 3.6942 -2.5955 4.4924 19 1 3.4948 -4.0036 4.9198 20 1 3.9132 -1.7417 5.6875 21 1 2.4903 -2.1248 3.7616 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6054 -0.2618 -2.1370 30 1 3.1264 -0.6444 -1.2951 31 1 -0.3231 -4.6619 -1.6667 32 1 2.0034 -5.2690 -0.5118 33 1 5.5226 -4.1066 -0.1297 34 1 4.1489 -5.0396 -0.0388 35 1 3.0087 -2.0553 1.6723 36 1 3.2567 -3.8102 1.8372 37 1 6.4831 -2.1684 4.8387 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259914015.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:29 Heat of formation + Delta-G solvation = 55.002770 kcal Electronic energy + Delta-G solvation = -17470.766211 eV Core-core repulsion = 14862.960193 eV Total energy + Delta-G solvation = -2607.806018 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.90809 -36.26461 -35.71491 -32.50295 -31.58374 -29.17199 -28.68895 -27.05546 -26.01651 -24.44026 -21.24368 -20.85009 -20.30483 -18.59997 -17.42012 -16.24111 -15.31054 -15.03150 -14.47001 -14.20628 -14.00321 -13.52731 -13.40651 -13.19291 -12.96469 -12.46559 -12.23865 -12.11239 -11.93239 -11.84527 -11.16140 -11.08407 -10.85641 -10.72365 -10.62755 -10.36100 -10.25763 -9.92587 -9.37620 -8.85040 -8.69280 -8.14216 -7.86360 -6.20362 -4.20951 2.33698 2.87659 3.20365 3.28604 3.29944 3.33047 4.31664 4.74489 4.86205 5.01493 5.09428 5.16510 5.25012 5.45019 5.50434 5.59256 5.71173 5.72765 5.77566 5.91436 6.01308 6.14865 6.18673 6.21518 6.31284 6.37245 6.42646 6.64147 6.97298 7.08140 7.09660 7.42121 7.58321 7.80542 8.12094 8.15749 8.32261 8.80996 9.41477 10.91929 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.019750 B = 0.009215 C = 0.007616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.402591 B = 3037.655410 C = 3675.551726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C -0.143 4.143 4 C 0.138 3.862 5 N -0.365 5.365 6 N -0.309 5.309 7 C 0.038 3.962 8 C -0.276 4.276 9 C 0.118 3.882 10 C 0.161 3.839 11 H 0.081 0.919 12 N -0.833 5.833 13 C -0.033 4.033 14 C -0.527 4.527 15 H 0.075 0.925 16 C 0.074 3.926 17 N -0.896 5.896 18 Si 0.876 3.124 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.266 1.266 22 H 0.061 0.939 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.175 0.825 32 H 0.140 0.860 33 H 0.355 0.645 34 H 0.335 0.665 35 H 0.019 0.981 36 H 0.017 0.983 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.353 2.042 -7.942 12.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.137 4.137 3 C -0.201 4.201 4 C 0.016 3.984 5 N -0.147 5.147 6 N -0.130 5.130 7 C -0.147 4.147 8 C -0.305 4.305 9 C -0.011 4.011 10 C 0.047 3.953 11 H 0.099 0.901 12 N -0.363 5.363 13 C -0.073 4.073 14 C -0.565 4.565 15 H 0.093 0.907 16 C -0.129 4.129 17 N -0.533 5.533 18 Si 0.703 3.297 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.191 1.191 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.102 0.898 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.192 0.808 32 H 0.158 0.842 33 H 0.169 0.831 34 H 0.147 0.853 35 H 0.037 0.963 36 H 0.035 0.965 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.054 3.385 -9.028 13.930 hybrid contribution -0.144 -0.857 2.197 2.363 sum -10.198 2.528 -6.831 12.532 Atomic orbital electron populations 1.21790 0.94566 1.02518 1.01056 1.21581 0.96913 0.96708 0.98512 1.21752 1.01633 0.94809 1.01890 1.21768 1.00705 0.76584 0.99323 1.48465 1.12484 1.06741 1.47026 1.77218 1.02502 1.10197 1.23123 1.23690 0.98249 0.93196 0.99558 1.21053 0.96241 0.98883 1.14320 1.21359 0.95340 0.88255 0.96118 1.19863 0.86056 0.94451 0.94901 0.90138 1.59028 1.06995 1.03772 1.66482 1.20287 0.98556 0.97141 0.91266 1.20976 0.92306 1.50442 0.92779 0.90671 1.24958 0.95565 0.94180 0.98148 1.69894 1.22003 1.48733 1.12718 0.86832 0.83859 0.78474 0.80486 1.20179 1.21249 1.19113 0.91971 0.93044 0.92888 0.89789 0.92131 0.91917 0.92689 0.89395 0.88814 0.80804 0.84207 0.83052 0.85344 0.96311 0.96490 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.02 37.16 0.34 -1.62 16 2 C -0.12 -1.68 3.13 -90.62 -0.28 -1.97 16 3 C -0.14 -1.70 9.19 37.16 0.34 -1.36 16 4 C 0.14 2.00 5.67 -4.04 -0.02 1.98 16 5 N -0.36 -6.25 3.26 -57.14 -0.19 -6.44 16 6 N -0.31 -5.30 11.45 30.62 0.35 -4.95 16 7 C 0.04 0.61 12.03 -17.37 -0.21 0.40 16 8 C -0.28 -4.69 10.15 -40.01 -0.41 -5.10 16 9 C 0.12 2.14 5.98 -82.26 -0.49 1.65 16 10 C 0.16 3.09 3.01 -68.87 -0.21 2.88 16 11 H 0.08 1.57 6.89 -51.93 -0.36 1.21 16 12 N -0.83 -14.91 9.01 -5.66 -0.05 -14.96 16 13 C -0.03 -0.74 3.65 -27.88 -0.10 -0.84 16 14 C -0.53 -13.80 9.13 -34.44 -0.31 -14.11 16 15 H 0.08 2.09 7.40 -52.49 -0.39 1.70 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -26.26 13.96 55.43 0.77 -25.49 16 18 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 22 H 0.06 0.98 6.82 -51.93 -0.35 0.63 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.08 1.45 6.85 -51.93 -0.36 1.10 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.09 1.31 6.88 -51.93 -0.36 0.95 16 31 H 0.17 2.09 8.06 -52.49 -0.42 1.66 16 32 H 0.14 2.17 7.54 -52.49 -0.40 1.78 16 33 H 0.35 6.56 7.97 -39.29 -0.31 6.25 16 34 H 0.33 5.68 8.14 -39.29 -0.32 5.36 16 35 H 0.02 0.44 5.91 -51.93 -0.31 0.13 16 36 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 299.50 15.07 4.51 4.51 Total: -1.00 -29.57 299.50 -6.39 -35.96 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -5.67 Total: 11.05 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -1.46 Total: -16.14 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.89 Total: -51.84 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.57 -6.39 -35.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259914015.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.963 kcal (2) G-P(sol) polarization free energy of solvation -29.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds