Wall clock time and date at job start Mon Mar 30 2020 03:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 C 1.53005 * 109.47169 * 239.99743 * 2 1 3 5 5 N 1.46502 * 109.47261 * 295.00556 * 4 2 1 6 6 N 1.40079 * 126.04272 * 87.42752 * 5 4 2 7 7 C 1.30837 * 108.20605 * 179.97438 * 6 5 4 8 8 C 1.39868 * 108.20345 * 0.02562 * 7 6 5 9 9 C 1.34949 * 126.02747 * 267.11775 * 5 4 2 10 10 C 1.50692 * 126.13414 * 359.97438 * 9 5 4 11 11 H 1.09004 * 109.46964 * 335.19348 * 10 9 5 12 12 N 1.46901 * 109.47349 * 215.18993 * 10 9 5 13 13 C 1.52999 * 109.47324 * 95.19029 * 10 9 5 14 14 C 1.50704 * 109.47196 * 184.99903 * 13 10 9 15 15 H 1.07994 * 119.99788 * 0.02562 * 14 13 10 16 16 C 1.37880 * 119.99964 * 179.97438 * 14 13 10 17 17 N 1.31512 * 120.00097 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99842 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.46738 * 89.99779 * 18 16 14 20 20 H 1.48497 * 109.46796 * 209.99591 * 18 16 14 21 21 H 1.48493 * 109.47089 * 329.99850 * 18 16 14 22 22 H 1.08999 * 109.46788 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.46875 * 300.00242 * 1 2 3 24 24 H 1.08998 * 109.46859 * 60.00526 * 1 2 3 25 25 H 1.08999 * 109.46828 * 120.00026 * 2 1 3 26 26 H 1.09000 * 109.47094 * 59.99808 * 3 2 1 27 27 H 1.09000 * 109.47201 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47284 * 299.99747 * 3 2 1 29 29 H 1.09000 * 109.46752 * 54.99868 * 4 2 1 30 30 H 1.08999 * 109.47138 * 175.00113 * 4 2 1 31 31 H 1.07999 * 125.89498 * 179.97438 * 7 6 5 32 32 H 1.08000 * 126.04033 * 180.02562 * 8 7 6 33 33 H 1.00899 * 111.00177 * 173.92403 * 12 10 9 34 34 H 1.00896 * 111.00116 * 297.88635 * 12 10 9 35 35 H 1.08999 * 109.47115 * 305.00489 * 13 10 9 36 36 H 1.09004 * 109.46885 * 65.00048 * 13 10 9 37 37 H 0.96997 * 120.00082 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6524 -2.1329 -1.1906 6 7 0.4448 -2.6757 -1.6481 7 6 0.4656 -3.9647 -1.4252 8 6 1.6850 -4.2838 -0.8190 9 6 2.3983 -3.1408 -0.6916 10 6 3.7770 -3.0156 -0.0964 11 1 4.2681 -2.1303 -0.5004 12 7 4.5654 -4.2089 -0.4318 13 6 3.6665 -2.8883 1.4243 14 6 5.0334 -2.6403 2.0083 15 1 5.8947 -2.5791 1.3597 16 6 5.1842 -2.4904 3.3706 17 7 6.3770 -2.2734 3.8803 18 14 3.6942 -2.5955 4.4924 19 1 3.4948 -4.0036 4.9198 20 1 3.9132 -1.7417 5.6875 21 1 2.4903 -2.1248 3.7616 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6054 -0.2618 -2.1370 30 1 3.1264 -0.6444 -1.2951 31 1 -0.3231 -4.6619 -1.6667 32 1 2.0034 -5.2690 -0.5118 33 1 5.5226 -4.1066 -0.1297 34 1 4.1489 -5.0396 -0.0388 35 1 3.0087 -2.0553 1.6723 36 1 3.2567 -3.8102 1.8372 37 1 6.4831 -2.1684 4.8387 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259914015.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:29 Heat of formation + Delta-G solvation = 35.629620 kcal Electronic energy + Delta-G solvation = -17471.606294 eV Core-core repulsion = 14862.960193 eV Total energy + Delta-G solvation = -2608.646101 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.20219 -37.41737 -37.31650 -34.53749 -32.79707 -30.60147 -30.46879 -28.09416 -27.17772 -26.16582 -22.99062 -22.05250 -21.52805 -19.99549 -19.22204 -17.82949 -16.64312 -16.43519 -16.15206 -15.57789 -15.40637 -15.08146 -14.73081 -14.63158 -14.37284 -14.05507 -13.62095 -13.59583 -13.11254 -12.94380 -12.80801 -12.49548 -12.28800 -12.23450 -11.95609 -11.88631 -11.70702 -11.56467 -11.33323 -10.82306 -10.15027 -9.56723 -9.29190 -8.33988 -6.37502 1.00702 1.28422 1.32221 1.41364 1.65070 2.01905 2.29142 3.01130 3.58612 3.64022 3.75586 3.96219 4.05558 4.09929 4.23531 4.42756 4.47648 4.60075 4.63174 4.74018 4.84891 4.86819 4.91465 4.97841 5.06208 5.14823 5.18086 5.34497 5.35583 5.44599 5.54374 5.87526 6.11931 6.17749 6.30307 6.65043 6.69376 6.87321 7.27696 8.81216 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.019750 B = 0.009215 C = 0.007616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.402591 B = 3037.655410 C = 3675.551726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.114 4.114 3 C -0.139 4.139 4 C 0.132 3.868 5 N -0.369 5.369 6 N -0.320 5.320 7 C 0.040 3.960 8 C -0.280 4.280 9 C 0.094 3.906 10 C 0.173 3.827 11 H 0.073 0.927 12 N -0.825 5.825 13 C -0.023 4.023 14 C -0.521 4.521 15 H 0.050 0.950 16 C 0.020 3.980 17 N -0.939 5.939 18 Si 0.935 3.065 19 H -0.268 1.268 20 H -0.284 1.284 21 H -0.261 1.261 22 H 0.039 0.961 23 H 0.057 0.943 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.211 0.789 32 H 0.152 0.848 33 H 0.350 0.650 34 H 0.342 0.658 35 H 0.011 0.989 36 H 0.016 0.984 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.283 1.994 -8.673 14.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.134 4.134 3 C -0.196 4.196 4 C 0.011 3.989 5 N -0.151 5.151 6 N -0.141 5.141 7 C -0.145 4.145 8 C -0.309 4.309 9 C -0.034 4.034 10 C 0.059 3.941 11 H 0.091 0.909 12 N -0.354 5.354 13 C -0.063 4.063 14 C -0.559 4.559 15 H 0.068 0.932 16 C -0.178 4.178 17 N -0.579 5.579 18 Si 0.760 3.240 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.185 1.185 22 H 0.058 0.942 23 H 0.076 0.924 24 H 0.088 0.912 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.126 0.874 30 H 0.111 0.889 31 H 0.228 0.772 32 H 0.170 0.830 33 H 0.164 0.836 34 H 0.155 0.845 35 H 0.029 0.971 36 H 0.034 0.966 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.995 3.334 -9.774 15.828 hybrid contribution 0.477 -0.853 2.353 2.547 sum -11.518 2.481 -7.422 13.925 Atomic orbital electron populations 1.21725 0.93934 1.01366 1.02225 1.21523 0.97363 0.97711 0.96788 1.21729 1.01300 0.93357 1.03250 1.21973 1.00943 0.75789 1.00222 1.48671 1.12322 1.07314 1.46802 1.77197 1.02461 1.11020 1.23415 1.24275 0.98590 0.93193 0.98402 1.21349 0.96619 0.99066 1.13904 1.21228 0.95050 0.89429 0.97700 1.19570 0.87201 0.94697 0.92641 0.90892 1.59020 1.06606 1.03658 1.66160 1.20158 0.95935 0.96503 0.93673 1.21217 0.93304 1.48903 0.92484 0.93199 1.25727 0.97968 0.94292 0.99848 1.70017 1.24078 1.50712 1.13130 0.85890 0.80712 0.78762 0.78634 1.19354 1.21007 1.18494 0.94181 0.92365 0.91212 0.93369 0.91786 0.92445 0.90310 0.87406 0.88863 0.77217 0.83013 0.83567 0.84538 0.97052 0.96566 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.02 71.98 0.65 -2.84 16 2 C -0.11 -3.15 3.13 -10.79 -0.03 -3.19 16 3 C -0.14 -3.06 9.19 71.98 0.66 -2.40 16 4 C 0.13 3.65 5.67 86.38 0.49 4.14 16 5 N -0.37 -12.14 3.26 -334.69 -1.09 -13.23 16 6 N -0.32 -10.29 11.45 -57.02 -0.65 -10.94 16 7 C 0.04 1.17 12.03 85.24 1.02 2.19 16 8 C -0.28 -8.96 10.15 21.99 0.22 -8.73 16 9 C 0.09 3.33 5.98 41.40 0.25 3.58 16 10 C 0.17 6.58 3.01 44.17 0.13 6.71 16 11 H 0.07 2.87 6.89 -2.39 -0.02 2.85 16 12 N -0.82 -29.07 9.01 -171.81 -1.55 -30.62 16 13 C -0.02 -1.03 3.65 29.85 0.11 -0.92 16 14 C -0.52 -27.62 9.13 25.60 0.23 -27.39 16 15 H 0.05 2.85 7.40 -2.91 -0.02 2.82 16 16 C 0.02 1.12 5.47 84.66 0.46 1.58 16 17 N -0.94 -56.02 13.96 21.45 0.30 -55.72 16 18 Si 0.93 43.51 27.47 68.60 1.88 45.40 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 21 H -0.26 -11.78 6.54 99.48 0.65 -11.13 16 22 H 0.04 1.21 6.82 -2.39 -0.02 1.19 16 23 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.05 1.67 6.85 -2.39 -0.02 1.65 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.09 2.56 6.88 -2.39 -0.02 2.54 16 31 H 0.21 4.25 8.06 -2.91 -0.02 4.22 16 32 H 0.15 4.36 7.54 -2.91 -0.02 4.34 16 33 H 0.35 13.00 7.97 -89.69 -0.71 12.28 16 34 H 0.34 11.23 8.14 -89.70 -0.73 10.50 16 35 H 0.01 0.52 5.91 -2.39 -0.01 0.51 16 36 H 0.02 0.72 7.57 -2.38 -0.02 0.71 16 37 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -62.66 299.50 2.66 -60.00 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: -0.43 Total: 32.39 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 4.20 Total: -27.27 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -2.99 Total: -110.52 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.40 kcal Total: -62.66 2.66 -60.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259914015.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.629 kcal (2) G-P(sol) polarization free energy of solvation -62.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds