Wall clock time and date at job start Mon Mar 30 2020 03:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 110.99826 * 2 1 4 4 H 1.09002 * 109.47275 * 185.35664 * 3 2 1 5 5 C 1.50701 * 109.47270 * 305.35921 * 3 2 1 6 6 H 1.07998 * 119.99796 * 119.99780 * 5 3 2 7 7 C 1.37875 * 119.99951 * 300.00075 * 5 3 2 8 8 N 1.31507 * 119.99869 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99675 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47387 * 60.00161 * 9 7 5 11 11 H 1.48503 * 109.47030 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47333 * 299.99659 * 9 7 5 13 13 C 1.50704 * 109.47002 * 65.36122 * 3 2 1 14 14 C 1.35314 * 126.12699 * 7.10392 * 13 3 2 15 15 C 1.39867 * 107.91955 * 179.97438 * 14 13 3 16 16 C 1.50708 * 125.89861 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.46804 * 84.99447 * 16 15 14 18 18 C 1.52999 * 109.46889 * 324.99633 * 16 15 14 19 19 N 1.30838 * 108.20480 * 0.25894 * 15 14 13 20 20 N 1.34942 * 126.12448 * 187.06382 * 13 3 2 21 21 C 1.46502 * 126.04016 * 0.03362 * 20 13 3 22 22 H 1.09000 * 109.47447 * 305.52938 * 1 2 3 23 23 H 1.09002 * 109.47563 * 65.52941 * 1 2 3 24 24 H 1.09004 * 109.47115 * 185.53068 * 1 2 3 25 25 H 1.00895 * 111.00389 * 123.95693 * 2 1 3 26 26 H 0.97004 * 119.99637 * 180.02562 * 8 7 5 27 27 H 1.07997 * 126.03910 * 359.94000 * 14 13 3 28 28 H 1.08994 * 109.47138 * 204.99668 * 16 15 14 29 29 H 1.08994 * 109.47454 * 300.00028 * 17 16 15 30 30 H 1.09004 * 109.46716 * 180.02562 * 17 16 15 31 31 H 1.08995 * 109.47288 * 60.00699 * 17 16 15 32 32 H 1.08994 * 109.47037 * 180.02562 * 18 16 15 33 33 H 1.08999 * 109.46872 * 299.99969 * 18 16 15 34 34 H 1.09004 * 109.47241 * 60.00066 * 18 16 15 35 35 H 1.09003 * 109.47077 * 90.00404 * 21 20 13 36 36 H 1.09002 * 109.47146 * 209.99582 * 21 20 13 37 37 H 1.08996 * 109.46809 * 330.00434 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 3.0808 1.3441 -0.0959 5 6 1.4078 2.1351 -1.1587 6 1 0.8227 3.0247 -0.9780 7 6 1.6171 1.6980 -2.4495 8 7 2.3299 0.6150 -2.6695 9 14 0.8893 2.6450 -3.8857 10 1 1.4220 4.0312 -3.8856 11 1 1.2562 1.9734 -5.1583 12 1 -0.5895 2.6830 -3.7552 13 6 1.6224 2.0527 1.2915 14 6 1.0325 1.4687 2.3601 15 6 0.8611 2.4468 3.3450 16 6 0.2423 2.2349 4.7028 17 6 1.3081 1.7246 5.6748 18 6 -0.8842 1.2052 4.5947 19 7 1.3261 3.5788 2.8822 20 7 1.8175 3.3542 1.5897 21 6 2.4296 4.3567 0.7140 22 1 -0.3634 0.5972 0.8363 23 1 -0.3634 0.4257 -0.9353 24 1 -0.3633 -1.0229 0.0990 25 1 1.8306 -0.5261 0.7813 26 1 2.4774 0.3077 -3.5777 27 1 0.7444 0.4308 2.4384 28 1 -0.1618 3.1785 5.0692 29 1 1.7122 0.7810 5.3084 30 1 0.8604 1.5709 6.6567 31 1 2.1106 2.4581 5.7519 32 1 -1.3320 1.0523 5.5765 33 1 -1.6434 1.5688 3.9021 34 1 -0.4800 0.2616 4.2282 35 1 1.6565 4.8326 0.1106 36 1 2.9323 5.1103 1.3203 37 1 3.1550 3.8733 0.0598 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260102037.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:44 Heat of formation + Delta-G solvation = 70.546434 kcal Electronic energy + Delta-G solvation = -17596.080572 eV Core-core repulsion = 14988.948577 eV Total energy + Delta-G solvation = -2607.131995 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.61865 -35.93378 -35.09756 -32.17693 -31.57094 -29.20539 -27.15550 -26.71045 -25.73717 -24.41697 -22.20927 -21.53123 -18.87688 -18.48533 -16.46159 -15.89095 -14.97672 -14.66086 -14.37126 -14.27826 -13.87650 -13.09213 -13.07433 -12.83209 -12.40898 -12.17613 -12.04407 -11.72022 -11.65161 -11.29942 -11.09879 -10.96503 -10.84546 -10.82577 -10.66936 -10.37602 -9.87742 -9.79843 -9.40274 -8.54963 -8.20037 -7.64062 -7.00526 -6.01302 -4.16119 2.73967 3.25606 3.31875 3.32902 3.34188 3.53994 4.37334 4.93875 5.12757 5.21544 5.38455 5.49860 5.67233 5.76840 5.82363 5.89590 5.93034 5.99970 6.05081 6.08841 6.20317 6.34900 6.36332 6.42966 6.50724 6.64051 6.76113 6.86566 7.12664 7.39466 7.42272 7.73145 7.87524 7.99407 8.34769 8.62159 8.75220 9.01060 9.51459 11.02854 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.032792 B = 0.007632 C = 0.006886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.659519 B = 3667.747898 C = 4065.538665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.643 5.643 3 C 0.271 3.729 4 H 0.057 0.943 5 C -0.535 4.535 6 H 0.053 0.947 7 C 0.087 3.913 8 N -0.841 5.841 9 Si 0.882 3.118 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.278 1.278 13 C 0.110 3.890 14 C -0.304 4.304 15 C 0.073 3.927 16 C -0.010 4.010 17 C -0.138 4.138 18 C -0.139 4.139 19 N -0.329 5.329 20 N -0.365 5.365 21 C 0.116 3.884 22 H 0.016 0.984 23 H 0.067 0.933 24 H 0.032 0.968 25 H 0.303 0.697 26 H 0.259 0.741 27 H 0.134 0.866 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.950 1.419 9.871 10.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.270 5.270 3 C 0.161 3.839 4 H 0.075 0.925 5 C -0.574 4.574 6 H 0.072 0.928 7 C -0.121 4.121 8 N -0.475 5.475 9 Si 0.710 3.290 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 C -0.021 4.021 14 C -0.333 4.333 15 C -0.093 4.093 16 C -0.030 4.030 17 C -0.196 4.196 18 C -0.197 4.197 19 N -0.151 5.151 20 N -0.146 5.146 21 C -0.026 4.026 22 H 0.034 0.966 23 H 0.086 0.914 24 H 0.051 0.949 25 H 0.118 0.882 26 H 0.069 0.931 27 H 0.151 0.849 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.539 2.552 9.151 9.624 hybrid contribution -0.829 -0.039 -0.251 0.867 sum -2.367 2.513 8.900 9.547 Atomic orbital electron populations 1.22033 0.89772 0.97826 1.01170 1.60865 1.06557 1.14076 1.45466 1.18118 0.96426 0.84461 0.84877 0.92536 1.20654 1.36154 1.10879 0.89723 0.92844 1.24886 0.94468 0.94385 0.98321 1.70073 1.36163 1.20899 1.20371 0.86841 0.79852 0.80164 0.82166 1.20244 1.21164 1.20320 1.23355 0.95337 0.84640 0.98792 1.20861 1.16955 1.00607 0.94841 1.21979 0.99477 0.91564 0.96248 1.19382 0.94998 0.99312 0.89351 1.21764 0.98422 1.01479 0.97911 1.21775 0.97672 0.99071 1.01189 1.77060 1.20975 1.22855 0.94244 1.48216 1.47153 1.07812 1.11373 1.21728 0.98326 0.90482 0.92084 0.96597 0.91441 0.94899 0.88154 0.93081 0.84869 0.90657 0.92344 0.92554 0.92765 0.92619 0.92565 0.92131 0.91361 0.91338 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.90 9.52 60.06 0.57 1.47 16 2 N -0.64 -14.70 5.96 -116.49 -0.69 -15.39 16 3 C 0.27 6.45 2.49 -70.01 -0.17 6.28 16 4 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 5 C -0.54 -13.63 5.88 -34.44 -0.20 -13.83 16 6 H 0.05 1.39 6.93 -52.49 -0.36 1.03 16 7 C 0.09 2.28 5.25 -17.82 -0.09 2.18 16 8 N -0.84 -23.02 12.77 55.43 0.71 -22.31 16 9 Si 0.88 20.29 29.54 -169.99 -5.02 15.27 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.11 2.41 5.76 -82.27 -0.47 1.93 16 14 C -0.30 -6.08 7.42 -40.01 -0.30 -6.37 16 15 C 0.07 1.38 6.13 -82.40 -0.50 0.88 16 16 C -0.01 -0.15 3.38 -91.77 -0.31 -0.46 16 17 C -0.14 -1.74 9.18 37.16 0.34 -1.40 16 18 C -0.14 -1.78 8.78 37.16 0.33 -1.45 16 19 N -0.33 -6.86 12.58 33.67 0.42 -6.43 16 20 N -0.36 -7.71 4.01 -63.88 -0.26 -7.97 16 21 C 0.12 2.08 10.03 59.85 0.60 2.68 16 22 H 0.02 0.33 5.34 -51.93 -0.28 0.06 16 23 H 0.07 1.63 7.06 -51.93 -0.37 1.26 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.30 6.28 8.09 -39.29 -0.32 5.96 16 26 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 27 H 0.13 2.50 5.94 -52.49 -0.31 2.19 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.78 7.30 -51.93 -0.38 0.40 16 35 H 0.07 1.21 7.82 -51.93 -0.41 0.81 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.10 1.74 7.50 -51.93 -0.39 1.35 16 LS Contribution 297.57 15.07 4.48 4.48 Total: -1.00 -28.84 297.57 -6.32 -35.16 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.75 Total: 5.26 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -0.22 Total: -8.08 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.18 Total: -52.11 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.84 -6.32 -35.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260102037.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.711 kcal (2) G-P(sol) polarization free energy of solvation -28.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds