Wall clock time and date at job start Mon Mar 30 2020 03:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 110.99826 * 2 1 4 4 H 1.09002 * 109.47275 * 185.35664 * 3 2 1 5 5 C 1.50701 * 109.47270 * 305.35921 * 3 2 1 6 6 H 1.07998 * 119.99796 * 119.99780 * 5 3 2 7 7 C 1.37875 * 119.99951 * 300.00075 * 5 3 2 8 8 N 1.31507 * 119.99869 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99675 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47387 * 60.00161 * 9 7 5 11 11 H 1.48503 * 109.47030 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47333 * 299.99659 * 9 7 5 13 13 C 1.50704 * 109.47002 * 65.36122 * 3 2 1 14 14 C 1.35314 * 126.12699 * 7.10392 * 13 3 2 15 15 C 1.39867 * 107.91955 * 179.97438 * 14 13 3 16 16 C 1.50708 * 125.89861 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.46804 * 84.99447 * 16 15 14 18 18 C 1.52999 * 109.46889 * 324.99633 * 16 15 14 19 19 N 1.30838 * 108.20480 * 0.25894 * 15 14 13 20 20 N 1.34942 * 126.12448 * 187.06382 * 13 3 2 21 21 C 1.46502 * 126.04016 * 0.03362 * 20 13 3 22 22 H 1.09000 * 109.47447 * 305.52938 * 1 2 3 23 23 H 1.09002 * 109.47563 * 65.52941 * 1 2 3 24 24 H 1.09004 * 109.47115 * 185.53068 * 1 2 3 25 25 H 1.00895 * 111.00389 * 123.95693 * 2 1 3 26 26 H 0.97004 * 119.99637 * 180.02562 * 8 7 5 27 27 H 1.07997 * 126.03910 * 359.94000 * 14 13 3 28 28 H 1.08994 * 109.47138 * 204.99668 * 16 15 14 29 29 H 1.08994 * 109.47454 * 300.00028 * 17 16 15 30 30 H 1.09004 * 109.46716 * 180.02562 * 17 16 15 31 31 H 1.08995 * 109.47288 * 60.00699 * 17 16 15 32 32 H 1.08994 * 109.47037 * 180.02562 * 18 16 15 33 33 H 1.08999 * 109.46872 * 299.99969 * 18 16 15 34 34 H 1.09004 * 109.47241 * 60.00066 * 18 16 15 35 35 H 1.09003 * 109.47077 * 90.00404 * 21 20 13 36 36 H 1.09002 * 109.47146 * 209.99582 * 21 20 13 37 37 H 1.08996 * 109.46809 * 330.00434 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 3.0808 1.3441 -0.0959 5 6 1.4078 2.1351 -1.1587 6 1 0.8227 3.0247 -0.9780 7 6 1.6171 1.6980 -2.4495 8 7 2.3299 0.6150 -2.6695 9 14 0.8893 2.6450 -3.8857 10 1 1.4220 4.0312 -3.8856 11 1 1.2562 1.9734 -5.1583 12 1 -0.5895 2.6830 -3.7552 13 6 1.6224 2.0527 1.2915 14 6 1.0325 1.4687 2.3601 15 6 0.8611 2.4468 3.3450 16 6 0.2423 2.2349 4.7028 17 6 1.3081 1.7246 5.6748 18 6 -0.8842 1.2052 4.5947 19 7 1.3261 3.5788 2.8822 20 7 1.8175 3.3542 1.5897 21 6 2.4296 4.3567 0.7140 22 1 -0.3634 0.5972 0.8363 23 1 -0.3634 0.4257 -0.9353 24 1 -0.3633 -1.0229 0.0990 25 1 1.8306 -0.5261 0.7813 26 1 2.4774 0.3077 -3.5777 27 1 0.7444 0.4308 2.4384 28 1 -0.1618 3.1785 5.0692 29 1 1.7122 0.7810 5.3084 30 1 0.8604 1.5709 6.6567 31 1 2.1106 2.4581 5.7519 32 1 -1.3320 1.0523 5.5765 33 1 -1.6434 1.5688 3.9021 34 1 -0.4800 0.2616 4.2282 35 1 1.6565 4.8326 0.1106 36 1 2.9323 5.1103 1.3203 37 1 3.1550 3.8733 0.0598 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260102037.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:43 Heat of formation + Delta-G solvation = 51.768194 kcal Electronic energy + Delta-G solvation = -17596.894857 eV Core-core repulsion = 14988.948577 eV Total energy + Delta-G solvation = -2607.946280 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.19773 -37.58493 -36.48985 -34.07920 -33.08538 -30.87696 -28.78899 -27.93408 -27.18949 -26.29260 -23.71309 -23.12453 -20.50688 -19.93625 -18.34868 -17.59772 -16.68621 -16.39779 -15.97997 -15.71153 -15.04343 -14.74259 -14.57114 -14.26948 -13.99811 -13.90636 -13.30981 -13.15922 -13.13986 -12.85517 -12.70244 -12.60292 -12.21896 -12.14674 -12.04980 -12.00372 -11.72016 -11.33405 -11.26272 -10.55241 -9.81478 -9.27481 -8.78883 -8.01952 -6.21063 1.12428 1.41885 1.44726 1.50132 1.81565 1.98251 2.45005 3.22136 3.63307 3.90323 4.04950 4.19437 4.24820 4.33063 4.47320 4.59330 4.69951 4.77589 4.79543 4.88068 4.90436 4.93119 5.00014 5.04441 5.17419 5.20778 5.31720 5.42549 5.46043 5.56594 5.70207 5.92822 6.04030 6.29231 6.52682 6.83699 7.00354 7.19369 7.48979 9.01779 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.032792 B = 0.007632 C = 0.006886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.659519 B = 3667.747898 C = 4065.538665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.656 5.656 3 C 0.280 3.720 4 H 0.028 0.972 5 C -0.534 4.534 6 H 0.044 0.956 7 C 0.048 3.952 8 N -0.871 5.871 9 Si 0.937 3.063 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.281 1.281 13 C 0.086 3.914 14 C -0.299 4.299 15 C 0.075 3.925 16 C -0.012 4.012 17 C -0.132 4.132 18 C -0.135 4.135 19 N -0.346 5.346 20 N -0.376 5.376 21 C 0.113 3.887 22 H 0.019 0.981 23 H 0.037 0.963 24 H 0.058 0.942 25 H 0.316 0.684 26 H 0.258 0.742 27 H 0.145 0.855 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.873 1.422 11.280 11.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.284 5.284 3 C 0.170 3.830 4 H 0.045 0.955 5 C -0.573 4.573 6 H 0.062 0.938 7 C -0.157 4.157 8 N -0.506 5.506 9 Si 0.763 3.237 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.207 1.207 13 C -0.045 4.045 14 C -0.328 4.328 15 C -0.091 4.091 16 C -0.032 4.032 17 C -0.190 4.190 18 C -0.193 4.193 19 N -0.169 5.169 20 N -0.157 5.157 21 C -0.028 4.028 22 H 0.038 0.962 23 H 0.056 0.944 24 H 0.077 0.923 25 H 0.132 0.868 26 H 0.067 0.933 27 H 0.163 0.837 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.460 2.570 10.564 11.146 hybrid contribution -0.544 -0.038 -0.608 0.817 sum -3.003 2.531 9.955 10.702 Atomic orbital electron populations 1.21896 0.88884 0.99220 0.99597 1.60716 1.07400 1.13789 1.46449 1.17740 0.94622 0.85133 0.85548 0.95481 1.20760 1.35437 1.10550 0.90556 0.93802 1.25465 0.94801 0.95080 1.00378 1.70177 1.37530 1.22290 1.20640 0.85969 0.78770 0.79397 0.79528 1.19364 1.21024 1.20659 1.23147 0.97069 0.85534 0.98743 1.21036 1.16036 1.01306 0.94461 1.22705 0.98243 0.90454 0.97686 1.19613 0.95945 1.00387 0.87283 1.21731 0.97631 1.00751 0.98885 1.21759 0.96648 0.98104 1.02739 1.77042 1.21697 1.23949 0.94177 1.48466 1.47489 1.07935 1.11847 1.21823 0.98167 0.90518 0.92261 0.96241 0.94448 0.92299 0.86759 0.93271 0.83743 0.90168 0.92674 0.89416 0.93830 0.89523 0.93765 0.92310 0.91489 0.88732 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.28 9.52 127.69 1.22 3.49 16 2 N -0.66 -29.94 5.96 -522.45 -3.11 -33.06 16 3 C 0.28 13.53 2.49 43.42 0.11 13.63 16 4 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 5 C -0.53 -27.56 5.88 25.60 0.15 -27.41 16 6 H 0.04 2.31 6.93 -2.91 -0.02 2.29 16 7 C 0.05 2.51 5.25 84.66 0.44 2.95 16 8 N -0.87 -48.23 12.77 21.45 0.27 -47.96 16 9 Si 0.94 41.86 29.54 68.60 2.03 43.89 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 C 0.09 3.78 5.76 41.41 0.24 4.02 16 14 C -0.30 -11.69 7.42 21.99 0.16 -11.52 16 15 C 0.07 2.73 6.13 43.10 0.26 3.00 16 16 C -0.01 -0.32 3.38 -11.54 -0.04 -0.36 16 17 C -0.13 -2.95 9.18 71.98 0.66 -2.29 16 18 C -0.13 -3.03 8.78 71.98 0.63 -2.40 16 19 N -0.35 -14.12 12.58 -47.38 -0.60 -14.72 16 20 N -0.38 -15.86 4.01 -356.03 -1.43 -17.29 16 21 C 0.11 4.09 10.03 127.77 1.28 5.37 16 22 H 0.02 0.80 5.34 -2.39 -0.01 0.79 16 23 H 0.04 1.79 7.06 -2.39 -0.02 1.78 16 24 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 25 H 0.32 12.93 8.09 -89.70 -0.73 12.21 16 26 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 27 H 0.14 5.20 5.94 -2.91 -0.02 5.18 16 28 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 1.34 7.30 -2.38 -0.02 1.32 16 35 H 0.07 2.39 7.82 -2.39 -0.02 2.37 16 36 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.09 3.26 7.50 -2.39 -0.02 3.24 16 Total: -1.00 -61.07 297.57 2.61 -58.46 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 0.33 Total: 22.19 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 5.12 Total: -11.51 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -4.86 Total: -113.02 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -61.07 2.61 -58.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260102037.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.224 kcal (2) G-P(sol) polarization free energy of solvation -61.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds