Wall clock time and date at job start Mon Mar 30 2020 03:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47341 * 2 1 4 4 C 1.53005 * 109.47293 * 239.99780 * 2 1 3 5 5 C 1.50700 * 109.47005 * 120.00359 * 2 1 3 6 6 C 1.35315 * 126.12990 * 59.99458 * 5 2 1 7 7 C 1.39865 * 107.92159 * 180.02562 * 6 5 2 8 8 C 1.50705 * 125.90031 * 180.02562 * 7 6 5 9 9 H 1.08996 * 109.47568 * 204.99939 * 8 7 6 10 10 C 1.50701 * 109.47161 * 325.00283 * 8 7 6 11 11 H 1.07996 * 119.99736 * 5.43896 * 10 8 7 12 12 C 1.37869 * 120.00319 * 185.43251 * 10 8 7 13 13 N 1.31525 * 119.99904 * 9.54965 * 12 10 8 14 14 Si 1.86795 * 120.00517 * 189.54871 * 12 10 8 15 15 H 1.48505 * 109.47076 * 84.99438 * 14 12 10 16 16 H 1.48498 * 109.47645 * 204.99428 * 14 12 10 17 17 H 1.48507 * 109.46954 * 324.99909 * 14 12 10 18 18 C 1.53005 * 109.46952 * 84.99992 * 8 7 6 19 19 N 1.46904 * 109.46960 * 63.77352 * 18 8 7 20 20 N 1.30835 * 108.20343 * 0.02562 * 7 6 5 21 21 N 1.34951 * 126.12379 * 240.02758 * 5 2 1 22 22 H 0.96996 * 126.03967 * 359.97438 * 21 5 2 23 23 H 1.08996 * 109.47605 * 300.00110 * 1 2 3 24 24 H 1.09003 * 109.46768 * 60.00051 * 1 2 3 25 25 H 1.09000 * 109.46893 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47040 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47544 * 299.99782 * 3 2 1 28 28 H 1.09002 * 109.47013 * 59.99817 * 3 2 1 29 29 H 1.08999 * 109.47200 * 300.00475 * 4 2 1 30 30 H 1.09003 * 109.47076 * 60.00358 * 4 2 1 31 31 H 1.09003 * 109.47157 * 179.97438 * 4 2 1 32 32 H 1.07999 * 126.03775 * 359.76508 * 6 5 2 33 33 H 0.96998 * 119.99834 * 179.97438 * 13 12 10 34 34 H 1.08999 * 109.46915 * 183.77330 * 18 8 7 35 35 H 1.08999 * 109.47375 * 303.77701 * 18 8 7 36 36 H 1.00904 * 110.99875 * 179.97438 * 19 18 8 37 37 H 1.00902 * 111.00025 * 303.95673 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2304 6 6 1.7829 -1.9974 1.5663 7 6 2.4314 -2.2594 2.7776 8 6 2.4220 -3.5713 3.5192 9 1 2.6022 -3.3910 4.5789 10 6 1.0819 -4.2380 3.3438 11 1 0.3451 -3.8039 2.6842 12 6 0.7965 -5.4019 4.0254 13 7 1.6103 -5.8297 4.9658 14 14 -0.7461 -6.3714 3.6132 15 1 -0.4706 -7.2769 2.4688 16 1 -1.1557 -7.1751 4.7928 17 1 -1.8383 -5.4330 3.2500 18 6 3.5202 -4.4796 2.9625 19 7 4.8334 -3.8712 3.2144 20 7 3.0474 -1.1688 3.1556 21 7 2.8109 -0.1771 2.1950 22 1 3.1471 0.7325 2.2191 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2493 30 1 1.6768 -0.2075 -2.1393 31 1 3.1301 -0.7209 -1.2494 32 1 1.1850 -2.6971 1.0013 33 1 1.4093 -6.6485 5.4456 34 1 3.4704 -5.4521 3.4523 35 1 3.3781 -4.6057 1.8892 36 1 5.5761 -4.4527 2.8561 37 1 4.8818 -2.9415 2.8252 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260384813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:39 Heat of formation + Delta-G solvation = 48.726205 kcal Electronic energy + Delta-G solvation = -17313.774523 eV Core-core repulsion = 14705.696333 eV Total energy + Delta-G solvation = -2608.078191 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.71465 -36.67206 -34.95892 -32.16066 -30.88935 -28.80735 -28.09345 -27.22710 -26.92501 -23.81542 -21.94103 -21.49679 -18.98025 -18.13028 -16.89743 -16.06283 -14.98666 -14.54444 -14.31172 -14.28872 -13.82080 -13.47756 -13.24048 -12.95100 -12.67788 -12.26561 -12.23273 -11.89120 -11.72558 -11.28264 -11.01975 -10.93661 -10.83202 -10.75153 -10.49086 -10.35874 -9.83496 -9.65440 -9.10238 -8.38594 -8.32017 -7.80993 -7.54755 -6.00047 -4.02573 2.58263 3.33445 3.40136 3.42082 3.55168 3.74921 4.46327 4.64846 4.79846 4.91503 5.30068 5.31220 5.46333 5.58060 5.70191 5.72760 5.77260 5.81518 5.89195 5.93575 6.02819 6.20666 6.32099 6.48185 6.66633 6.69742 6.89443 6.93245 7.49902 7.64686 7.81717 7.95187 7.98150 8.20821 8.37220 8.46969 8.72418 9.01344 9.60053 11.08798 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.024863 B = 0.007695 C = 0.006483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.883599 B = 3638.043550 C = 4317.783245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.001 4.001 3 C -0.150 4.150 4 C -0.135 4.135 5 C 0.072 3.928 6 C -0.245 4.245 7 C 0.123 3.877 8 C 0.119 3.881 9 H 0.057 0.943 10 C -0.513 4.513 11 H 0.063 0.937 12 C 0.065 3.935 13 N -0.881 5.881 14 Si 0.890 3.110 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.081 3.919 19 N -0.852 5.852 20 N -0.310 5.310 21 N -0.495 5.495 22 H 0.424 0.576 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.139 0.861 33 H 0.262 0.738 34 H 0.089 0.911 35 H 0.001 0.999 36 H 0.319 0.681 37 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.540 10.477 -11.626 15.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.003 4.003 3 C -0.208 4.208 4 C -0.193 4.193 5 C -0.056 4.056 6 C -0.275 4.275 7 C -0.044 4.044 8 C 0.098 3.902 9 H 0.075 0.925 10 C -0.552 4.552 11 H 0.081 0.919 12 C -0.138 4.138 13 N -0.519 5.519 14 Si 0.718 3.282 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.050 4.050 19 N -0.380 5.380 20 N -0.132 5.132 21 N -0.202 5.202 22 H 0.266 0.734 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.157 0.843 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.020 0.980 36 H 0.129 0.871 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.092 10.783 -9.808 14.617 hybrid contribution -1.109 -0.427 -1.830 2.181 sum -0.016 10.356 -11.638 15.578 Atomic orbital electron populations 1.21861 0.93039 1.02966 1.01531 1.19138 0.96033 0.94005 0.91129 1.21944 1.01040 0.95430 1.02350 1.21855 1.01073 1.00916 0.95454 1.20784 0.97458 0.94715 0.92648 1.21129 1.10375 0.95157 1.00794 1.23259 0.91951 0.95506 0.93674 1.17372 0.94249 0.83200 0.95398 0.92546 1.21027 0.98939 1.08271 1.26947 0.91922 1.24966 0.96721 0.97712 0.94369 1.70011 1.37569 1.22668 1.21637 0.86633 0.83466 0.80193 0.77895 1.20562 1.21322 1.19923 1.21910 0.86785 1.00288 0.96022 1.58894 1.05384 1.06128 1.67556 1.77426 1.26108 0.97616 1.12029 1.46321 1.42794 1.12918 1.18140 0.73408 0.92521 0.92386 0.91557 0.92542 0.91690 0.92478 0.91641 0.92347 0.92678 0.84303 0.92847 0.89252 0.98047 0.87133 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.35 37.16 0.31 -1.28 16 2 C 0.00 -0.01 0.93 -155.66 -0.14 -0.16 16 3 C -0.15 -1.46 7.52 37.16 0.28 -1.18 16 4 C -0.14 -1.51 8.35 37.16 0.31 -1.20 16 5 C 0.07 1.19 5.60 -82.26 -0.46 0.73 16 6 C -0.25 -4.96 9.04 -40.01 -0.36 -5.32 16 7 C 0.12 2.83 5.25 -82.41 -0.43 2.40 16 8 C 0.12 3.09 2.32 -92.92 -0.22 2.88 16 9 H 0.06 1.69 8.09 -51.93 -0.42 1.27 16 10 C -0.51 -14.01 8.24 -34.44 -0.28 -14.29 16 11 H 0.06 1.68 6.71 -52.49 -0.35 1.33 16 12 C 0.06 1.79 5.17 -17.82 -0.09 1.69 16 13 N -0.88 -25.37 12.16 55.43 0.67 -24.70 16 14 Si 0.89 21.05 29.55 -169.99 -5.02 16.03 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 C 0.08 1.97 6.13 -3.82 -0.02 1.94 16 19 N -0.85 -18.30 9.62 -10.36 -0.10 -18.40 16 20 N -0.31 -6.73 12.28 33.67 0.41 -6.32 16 21 N -0.49 -8.45 7.10 33.48 0.24 -8.21 16 22 H 0.42 5.76 8.02 -182.61 -1.46 4.30 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.84 8.01 -51.93 -0.42 0.43 16 26 H 0.06 0.52 8.07 -51.93 -0.42 0.11 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.55 8.07 -51.93 -0.42 0.13 16 29 H 0.06 0.79 8.01 -51.93 -0.42 0.37 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.14 2.79 7.61 -52.49 -0.40 2.39 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.09 2.38 6.83 -51.93 -0.35 2.03 16 35 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 36 H 0.32 5.90 9.08 -39.29 -0.36 5.54 16 37 H 0.33 6.88 7.69 -39.29 -0.30 6.58 16 LS Contribution 302.26 15.07 4.55 4.55 Total: -1.00 -30.28 302.26 -7.35 -37.63 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -6.99 Total: 13.20 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -1.11 Total: -13.78 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 1.23 Total: -57.63 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.28 -7.35 -37.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260384813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.357 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds