Wall clock time and date at job start Mon Mar 30 2020 03:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47341 * 2 1 4 4 C 1.53005 * 109.47293 * 239.99780 * 2 1 3 5 5 C 1.50700 * 109.47005 * 120.00359 * 2 1 3 6 6 C 1.35315 * 126.12990 * 59.99458 * 5 2 1 7 7 C 1.39865 * 107.92159 * 180.02562 * 6 5 2 8 8 C 1.50705 * 125.90031 * 180.02562 * 7 6 5 9 9 H 1.08996 * 109.47568 * 204.99939 * 8 7 6 10 10 C 1.50701 * 109.47161 * 325.00283 * 8 7 6 11 11 H 1.07996 * 119.99736 * 5.43896 * 10 8 7 12 12 C 1.37869 * 120.00319 * 185.43251 * 10 8 7 13 13 N 1.31525 * 119.99904 * 9.54965 * 12 10 8 14 14 Si 1.86795 * 120.00517 * 189.54871 * 12 10 8 15 15 H 1.48505 * 109.47076 * 84.99438 * 14 12 10 16 16 H 1.48498 * 109.47645 * 204.99428 * 14 12 10 17 17 H 1.48507 * 109.46954 * 324.99909 * 14 12 10 18 18 C 1.53005 * 109.46952 * 84.99992 * 8 7 6 19 19 N 1.46904 * 109.46960 * 63.77352 * 18 8 7 20 20 N 1.30835 * 108.20343 * 0.02562 * 7 6 5 21 21 N 1.34951 * 126.12379 * 240.02758 * 5 2 1 22 22 H 0.96996 * 126.03967 * 359.97438 * 21 5 2 23 23 H 1.08996 * 109.47605 * 300.00110 * 1 2 3 24 24 H 1.09003 * 109.46768 * 60.00051 * 1 2 3 25 25 H 1.09000 * 109.46893 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47040 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47544 * 299.99782 * 3 2 1 28 28 H 1.09002 * 109.47013 * 59.99817 * 3 2 1 29 29 H 1.08999 * 109.47200 * 300.00475 * 4 2 1 30 30 H 1.09003 * 109.47076 * 60.00358 * 4 2 1 31 31 H 1.09003 * 109.47157 * 179.97438 * 4 2 1 32 32 H 1.07999 * 126.03775 * 359.76508 * 6 5 2 33 33 H 0.96998 * 119.99834 * 179.97438 * 13 12 10 34 34 H 1.08999 * 109.46915 * 183.77330 * 18 8 7 35 35 H 1.08999 * 109.47375 * 303.77701 * 18 8 7 36 36 H 1.00904 * 110.99875 * 179.97438 * 19 18 8 37 37 H 1.00902 * 111.00025 * 303.95673 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2304 6 6 1.7829 -1.9974 1.5663 7 6 2.4314 -2.2594 2.7776 8 6 2.4220 -3.5713 3.5192 9 1 2.6022 -3.3910 4.5789 10 6 1.0819 -4.2380 3.3438 11 1 0.3451 -3.8039 2.6842 12 6 0.7965 -5.4019 4.0254 13 7 1.6103 -5.8297 4.9658 14 14 -0.7461 -6.3714 3.6132 15 1 -0.4706 -7.2769 2.4688 16 1 -1.1557 -7.1751 4.7928 17 1 -1.8383 -5.4330 3.2500 18 6 3.5202 -4.4796 2.9625 19 7 4.8334 -3.8712 3.2144 20 7 3.0474 -1.1688 3.1556 21 7 2.8109 -0.1771 2.1950 22 1 3.1471 0.7325 2.2191 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2493 30 1 1.6768 -0.2075 -2.1393 31 1 3.1301 -0.7209 -1.2494 32 1 1.1850 -2.6971 1.0013 33 1 1.4093 -6.6485 5.4456 34 1 3.4704 -5.4521 3.4523 35 1 3.3781 -4.6057 1.8892 36 1 5.5761 -4.4527 2.8561 37 1 4.8818 -2.9415 2.8252 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260384813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:39 Heat of formation + Delta-G solvation = 27.096704 kcal Electronic energy + Delta-G solvation = -17314.712449 eV Core-core repulsion = 14705.696333 eV Total energy + Delta-G solvation = -2609.016116 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.22158 -37.88587 -36.73001 -34.20172 -32.56006 -30.23871 -29.88113 -28.11014 -27.91310 -25.88281 -23.51322 -23.06698 -20.40101 -19.83439 -18.45757 -17.79192 -16.89162 -16.30750 -15.74315 -15.58041 -15.14292 -14.82374 -14.63729 -14.56197 -14.17661 -13.84338 -13.10304 -13.07789 -13.01374 -12.74493 -12.58001 -12.53266 -12.37362 -12.15377 -11.90323 -11.75636 -11.56591 -11.46689 -11.05181 -10.48879 -9.98015 -9.38101 -9.33213 -8.11378 -6.21391 1.10335 1.45606 1.46339 1.56247 2.06248 2.15756 2.47847 3.18234 3.57461 3.86716 3.99968 4.04228 4.10191 4.36099 4.68322 4.70518 4.78606 4.79261 4.88172 4.88899 4.97701 5.01924 5.05359 5.12611 5.20212 5.28212 5.43181 5.48739 5.56113 5.69533 5.81776 5.96622 6.22386 6.46224 6.67035 6.74342 6.89604 7.05488 7.45318 8.97903 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.024863 B = 0.007695 C = 0.006483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.883599 B = 3638.043550 C = 4317.783245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.001 4.001 3 C -0.148 4.148 4 C -0.134 4.134 5 C 0.104 3.896 6 C -0.275 4.275 7 C 0.099 3.901 8 C 0.123 3.877 9 H 0.004 0.996 10 C -0.527 4.527 11 H 0.063 0.937 12 C 0.017 3.983 13 N -0.915 5.915 14 Si 0.958 3.042 15 H -0.269 1.269 16 H -0.286 1.286 17 H -0.268 1.268 18 C 0.096 3.904 19 N -0.852 5.852 20 N -0.339 5.339 21 N -0.475 5.475 22 H 0.442 0.558 23 H 0.048 0.952 24 H 0.090 0.910 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.133 0.867 33 H 0.263 0.737 34 H 0.061 0.939 35 H 0.006 0.994 36 H 0.337 0.663 37 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.118 12.153 -14.005 18.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.003 4.003 3 C -0.206 4.206 4 C -0.192 4.192 5 C -0.025 4.025 6 C -0.305 4.305 7 C -0.066 4.066 8 C 0.102 3.898 9 H 0.022 0.978 10 C -0.566 4.566 11 H 0.081 0.919 12 C -0.183 4.183 13 N -0.554 5.554 14 Si 0.783 3.217 15 H -0.195 1.195 16 H -0.211 1.211 17 H -0.192 1.192 18 C -0.036 4.036 19 N -0.381 5.381 20 N -0.162 5.162 21 N -0.184 5.184 22 H 0.288 0.712 23 H 0.067 0.933 24 H 0.108 0.892 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.109 0.891 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.151 0.849 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.024 0.976 36 H 0.150 0.850 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.458 12.477 -12.191 17.450 hybrid contribution -0.862 -0.830 -1.107 1.630 sum -0.404 11.647 -13.298 17.682 Atomic orbital electron populations 1.21874 0.92394 1.02345 1.02759 1.19379 0.96458 0.95402 0.89100 1.21959 1.01446 0.93352 1.03813 1.21858 1.00961 1.00388 0.95944 1.21386 0.94644 0.93490 0.93023 1.21095 1.11877 0.97005 1.00498 1.22843 0.93925 0.94875 0.94937 1.17086 0.94441 0.85420 0.92856 0.97752 1.21311 0.99663 1.08704 1.26885 0.91913 1.25779 0.99954 0.98563 0.94013 1.70150 1.39549 1.23064 1.22616 0.85572 0.79626 0.78714 0.77804 1.19454 1.21146 1.19214 1.21550 0.87777 0.98673 0.95571 1.58740 1.04794 1.06654 1.67956 1.77304 1.26953 0.98189 1.13734 1.46263 1.41970 1.13058 1.17135 0.71223 0.93300 0.89169 0.93172 0.91986 0.89052 0.92341 0.93080 0.89274 0.92882 0.84883 0.92830 0.92062 0.97594 0.85044 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.35 71.98 0.60 -2.19 16 2 C 0.00 -0.03 0.93 -52.93 -0.05 -0.08 16 3 C -0.15 -2.24 7.52 71.98 0.54 -1.70 16 4 C -0.13 -2.56 8.35 71.98 0.60 -1.96 16 5 C 0.10 3.30 5.60 41.40 0.23 3.53 16 6 C -0.28 -11.20 9.04 21.99 0.20 -11.00 16 7 C 0.10 4.71 5.25 43.10 0.23 4.94 16 8 C 0.12 6.70 2.32 -12.28 -0.03 6.67 16 9 H 0.00 0.28 8.09 -2.39 -0.02 0.26 16 10 C -0.53 -29.74 8.24 25.60 0.21 -29.53 16 11 H 0.06 3.46 6.71 -2.91 -0.02 3.44 16 12 C 0.02 0.93 5.17 84.65 0.44 1.37 16 13 N -0.92 -54.53 12.16 21.45 0.26 -54.27 16 14 Si 0.96 43.77 29.55 68.60 2.03 45.80 16 15 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 16 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 C 0.10 4.82 6.13 86.30 0.53 5.35 16 19 N -0.85 -37.26 9.62 -186.70 -1.80 -39.05 16 20 N -0.34 -14.84 12.28 -47.38 -0.58 -15.42 16 21 N -0.48 -15.58 7.10 -48.00 -0.34 -15.92 16 22 H 0.44 10.97 8.02 -213.33 -1.71 9.26 16 23 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.05 1.19 8.01 -2.39 -0.02 1.17 16 26 H 0.06 0.89 8.07 -2.39 -0.02 0.87 16 27 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 0.89 8.07 -2.39 -0.02 0.87 16 29 H 0.05 1.13 8.01 -2.39 -0.02 1.11 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.13 5.46 7.61 -2.91 -0.02 5.43 16 33 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 34 H 0.06 3.41 6.83 -2.39 -0.02 3.39 16 35 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.34 12.48 9.08 -89.69 -0.81 11.67 16 37 H 0.33 14.13 7.69 -89.69 -0.69 13.44 16 Total: -1.00 -68.13 302.26 0.93 -67.20 By element: Atomic # 1 Polarization: 38.39 SS G_CDS: -2.13 Total: 36.26 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: 3.50 Total: -24.59 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -2.46 Total: -124.66 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -68.13 0.93 -67.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260384813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.295 kcal (2) G-P(sol) polarization free energy of solvation -68.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds