Wall clock time and date at job start Mon Mar 30 2020 03:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30828 * 125.89965 * 2 1 4 4 N 1.40089 * 108.20655 * 179.97438 * 3 2 1 5 5 C 1.46493 * 126.03998 * 179.97438 * 4 3 2 6 6 C 1.34951 * 107.92394 * 0.26989 * 4 3 2 7 7 C 1.35316 * 107.74226 * 359.56906 * 6 4 3 8 8 C 1.50701 * 126.03793 * 180.16437 * 7 6 4 9 9 C 1.53001 * 109.47343 * 114.01456 * 8 7 6 10 10 C 1.50697 * 109.47140 * 234.01354 * 8 7 6 11 11 H 1.08007 * 120.00150 * 359.97438 * 10 8 7 12 12 C 1.37883 * 120.00069 * 180.02562 * 10 8 7 13 13 N 1.31506 * 120.00088 * 359.97438 * 12 10 8 14 14 Si 1.86801 * 120.00026 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46995 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47406 * 119.99760 * 14 12 10 17 17 H 1.48502 * 109.47228 * 240.00024 * 14 12 10 18 18 N 1.46898 * 109.47022 * 354.01073 * 8 7 6 19 19 C 1.46896 * 111.00481 * 301.69475 * 18 8 7 20 20 C 1.46901 * 110.99977 * 65.64888 * 18 8 7 21 21 H 1.09003 * 109.46607 * 85.05334 * 1 2 3 22 22 H 1.08996 * 109.47168 * 205.05226 * 1 2 3 23 23 H 1.09000 * 109.46961 * 325.05419 * 1 2 3 24 24 H 1.09007 * 109.47202 * 90.03062 * 5 4 3 25 25 H 1.08999 * 109.47489 * 330.03238 * 5 4 3 26 26 H 1.09002 * 109.47437 * 210.03014 * 5 4 3 27 27 H 1.07992 * 126.12625 * 179.73517 * 6 4 3 28 28 H 1.09000 * 109.46963 * 57.25042 * 9 8 7 29 29 H 1.08995 * 109.47341 * 177.25382 * 9 8 7 30 30 H 1.09005 * 109.46707 * 297.25365 * 9 8 7 31 31 H 0.97000 * 120.00579 * 180.02562 * 13 12 10 32 32 H 1.08997 * 109.46991 * 63.45954 * 19 18 8 33 33 H 1.08997 * 109.47580 * 183.46578 * 19 18 8 34 34 H 1.09005 * 109.47266 * 303.46296 * 19 18 8 35 35 H 1.09002 * 109.47208 * 69.97381 * 20 18 8 36 36 H 1.09001 * 109.47310 * 189.96656 * 20 18 8 37 37 H 1.08993 * 109.47416 * 309.97484 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 0.0006 5 6 4.7899 1.5006 0.0003 6 6 3.6142 -0.7155 -0.0051 7 6 2.3271 -1.1331 0.0005 8 6 1.8598 -2.5658 0.0007 9 6 1.1500 -2.8706 1.3213 10 6 0.9048 -2.7828 -1.1447 11 1 0.6603 -1.9649 -1.8063 12 6 0.3424 -4.0253 -1.3473 13 7 0.6396 -5.0210 -0.5414 14 14 -0.8409 -4.2945 -2.7675 15 1 -1.0074 -3.0253 -3.5204 16 1 -0.2987 -5.3398 -3.6723 17 1 -2.1577 -4.7321 -2.2386 18 7 3.0168 -3.4582 -0.1507 19 6 3.7478 -3.1668 -1.3912 20 6 3.9049 -3.3715 1.0163 21 1 -0.3632 0.0886 -1.0239 22 1 -0.3633 -0.9309 0.4351 23 1 -0.3633 0.8424 0.5887 24 1 5.0830 1.7158 1.0279 25 1 4.5564 2.4330 -0.5137 26 1 5.6093 0.9979 -0.5135 27 1 4.4891 -1.3486 -0.0102 28 1 0.3208 -2.1762 1.4568 29 1 0.7694 -3.8918 1.3020 30 1 1.8542 -2.7609 2.1461 31 1 0.2443 -5.8952 -0.6842 32 1 4.1542 -2.1565 -1.3446 33 1 4.5625 -3.8811 -1.5092 34 1 3.0689 -3.2465 -2.2403 35 1 3.4165 -3.8246 1.8790 36 1 4.8343 -3.9005 0.8057 37 1 4.1227 -2.3251 1.2302 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260434457.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:00 Heat of formation + Delta-G solvation = 113.307288 kcal Electronic energy + Delta-G solvation = -18303.415904 eV Core-core repulsion = 15698.138160 eV Total energy + Delta-G solvation = -2605.277745 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.75057 -36.97690 -33.48610 -32.34794 -29.84288 -29.37322 -27.91142 -26.89139 -24.76875 -24.47690 -22.84326 -20.48053 -19.62039 -18.33943 -16.47822 -15.57146 -14.95234 -14.51127 -14.14584 -13.66820 -13.45799 -13.05889 -12.95887 -12.55452 -12.33643 -11.94777 -11.92077 -11.47552 -11.32286 -11.20571 -10.90908 -10.73912 -10.60013 -10.35031 -10.22772 -10.10075 -9.76139 -9.44494 -8.90219 -8.42038 -8.28810 -7.30382 -6.70695 -5.77546 -3.91480 2.56194 3.14125 3.35775 3.45261 3.48254 3.67627 4.53756 4.94070 5.24288 5.34822 5.43953 5.54002 5.66178 5.72126 6.03983 6.18058 6.27223 6.41704 6.43623 6.46889 6.59917 6.69049 6.70150 6.82740 6.89340 7.03147 7.08750 7.33211 7.39684 7.52180 7.71336 7.92180 8.08102 8.37861 8.46842 8.72709 8.81682 9.17588 9.74250 11.21921 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.010405 C = 0.008944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.028383 B = 2690.313883 C = 3129.806005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.090 3.910 3 N -0.321 5.321 4 N -0.396 5.396 5 C 0.112 3.888 6 C 0.013 3.987 7 C -0.200 4.200 8 C 0.306 3.694 9 C -0.127 4.127 10 C -0.507 4.507 11 H 0.055 0.945 12 C 0.085 3.915 13 N -0.846 5.846 14 Si 0.876 3.124 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.286 1.286 18 N -0.495 5.495 19 C 0.031 3.969 20 C 0.010 3.990 21 H 0.069 0.931 22 H 0.094 0.906 23 H 0.052 0.948 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.172 0.828 28 H 0.033 0.967 29 H 0.093 0.907 30 H 0.009 0.991 31 H 0.253 0.747 32 H 0.010 0.990 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.040 0.960 37 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.829 6.670 1.851 9.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.077 4.077 3 N -0.145 5.145 4 N -0.180 5.180 5 C -0.030 4.030 6 C -0.128 4.128 7 C -0.213 4.213 8 C 0.218 3.782 9 C -0.185 4.185 10 C -0.546 4.546 11 H 0.073 0.927 12 C -0.121 4.121 13 N -0.482 5.482 14 Si 0.704 3.296 15 H -0.200 1.200 16 H -0.213 1.213 17 H -0.212 1.212 18 N -0.217 5.217 19 C -0.117 4.117 20 C -0.138 4.138 21 H 0.088 0.912 22 H 0.112 0.888 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.189 0.811 28 H 0.052 0.948 29 H 0.111 0.889 30 H 0.028 0.972 31 H 0.064 0.936 32 H 0.028 0.972 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 5.813 7.317 1.871 9.531 hybrid contribution 0.021 -0.233 -0.841 0.873 sum 5.834 7.085 1.030 9.235 Atomic orbital electron populations 1.20244 0.87043 1.02922 1.02290 1.22153 0.96778 0.90201 0.98528 1.77083 0.86579 1.23339 1.27496 1.48230 1.04945 1.04663 1.60174 1.21585 0.84444 0.94819 1.02188 1.22767 0.99931 0.84047 1.06103 1.21571 0.90761 0.99842 1.09107 1.17192 0.87493 0.78530 0.95028 1.21900 0.97937 1.04067 0.94563 1.20825 1.25291 0.95710 1.12768 0.92697 1.24880 0.95588 0.96178 0.95466 1.70010 1.41368 1.00861 1.35929 0.86818 0.81319 0.78109 0.83362 1.19956 1.21298 1.21181 1.62484 1.06421 1.53723 0.99061 1.22372 0.97254 0.96238 0.95874 1.22634 0.96442 0.98116 0.96647 0.91189 0.88775 0.92909 0.91878 0.90197 0.90455 0.81095 0.94793 0.88878 0.97221 0.93630 0.97193 0.94680 0.90792 0.92242 0.94081 0.96569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.27 9.18 36.01 0.33 -0.94 16 2 C 0.09 1.93 6.93 -82.41 -0.57 1.36 16 3 N -0.32 -6.69 12.58 33.67 0.42 -6.26 16 4 N -0.40 -7.28 4.01 -68.17 -0.27 -7.55 16 5 C 0.11 1.40 11.47 59.84 0.69 2.08 16 6 C 0.01 0.26 7.50 -17.22 -0.13 0.13 16 7 C -0.20 -4.40 4.11 -105.05 -0.43 -4.83 16 8 C 0.31 7.21 0.06 -133.91 -0.01 7.20 16 9 C -0.13 -2.97 7.86 37.16 0.29 -2.68 16 10 C -0.51 -13.00 5.48 -34.44 -0.19 -13.19 16 11 H 0.05 1.46 7.20 -52.48 -0.38 1.08 16 12 C 0.08 2.21 5.23 -17.82 -0.09 2.12 16 13 N -0.85 -22.88 10.78 55.43 0.60 -22.28 16 14 Si 0.88 20.55 29.54 -169.99 -5.02 15.53 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 N -0.49 -11.32 4.15 -238.13 -0.99 -12.30 16 19 C 0.03 0.66 8.81 60.06 0.53 1.19 16 20 C 0.01 0.20 8.20 60.07 0.49 0.70 16 21 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 22 H 0.09 1.88 5.14 -51.93 -0.27 1.61 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 25 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.17 3.07 4.54 -52.49 -0.24 2.83 16 28 H 0.03 0.76 5.73 -51.93 -0.30 0.46 16 29 H 0.09 2.40 6.00 -51.93 -0.31 2.09 16 30 H 0.01 0.20 6.40 -51.93 -0.33 -0.13 16 31 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 32 H 0.01 0.20 4.34 -51.93 -0.23 -0.03 16 33 H 0.03 0.67 8.09 -51.93 -0.42 0.25 16 34 H 0.07 1.74 7.02 -51.93 -0.36 1.37 16 35 H 0.06 1.21 6.78 -51.93 -0.35 0.85 16 36 H 0.04 0.72 7.99 -51.93 -0.41 0.31 16 37 H 0.02 0.31 4.58 -51.93 -0.24 0.07 16 LS Contribution 280.04 15.07 4.22 4.22 Total: -1.00 -29.52 280.04 -5.22 -34.74 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -5.09 Total: 0.78 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 0.91 Total: -6.87 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.24 Total: -48.40 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.52 -5.22 -34.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260434457.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.049 kcal (2) G-P(sol) polarization free energy of solvation -29.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds