Wall clock time and date at job start Mon Mar 30 2020 02:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30828 * 125.89965 * 2 1 4 4 N 1.40089 * 108.20655 * 179.97438 * 3 2 1 5 5 C 1.46493 * 126.03998 * 179.97438 * 4 3 2 6 6 C 1.34951 * 107.92394 * 0.26989 * 4 3 2 7 7 C 1.35316 * 107.74226 * 359.56906 * 6 4 3 8 8 C 1.50701 * 126.03793 * 180.16437 * 7 6 4 9 9 C 1.53001 * 109.47343 * 114.01456 * 8 7 6 10 10 C 1.50697 * 109.47140 * 234.01354 * 8 7 6 11 11 H 1.08007 * 120.00150 * 359.97438 * 10 8 7 12 12 C 1.37883 * 120.00069 * 180.02562 * 10 8 7 13 13 N 1.31506 * 120.00088 * 359.97438 * 12 10 8 14 14 Si 1.86801 * 120.00026 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46995 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47406 * 119.99760 * 14 12 10 17 17 H 1.48502 * 109.47228 * 240.00024 * 14 12 10 18 18 N 1.46898 * 109.47022 * 354.01073 * 8 7 6 19 19 C 1.46896 * 111.00481 * 301.69475 * 18 8 7 20 20 C 1.46901 * 110.99977 * 65.64888 * 18 8 7 21 21 H 1.09003 * 109.46607 * 85.05334 * 1 2 3 22 22 H 1.08996 * 109.47168 * 205.05226 * 1 2 3 23 23 H 1.09000 * 109.46961 * 325.05419 * 1 2 3 24 24 H 1.09007 * 109.47202 * 90.03062 * 5 4 3 25 25 H 1.08999 * 109.47489 * 330.03238 * 5 4 3 26 26 H 1.09002 * 109.47437 * 210.03014 * 5 4 3 27 27 H 1.07992 * 126.12625 * 179.73517 * 6 4 3 28 28 H 1.09000 * 109.46963 * 57.25042 * 9 8 7 29 29 H 1.08995 * 109.47341 * 177.25382 * 9 8 7 30 30 H 1.09005 * 109.46707 * 297.25365 * 9 8 7 31 31 H 0.97000 * 120.00579 * 180.02562 * 13 12 10 32 32 H 1.08997 * 109.46991 * 63.45954 * 19 18 8 33 33 H 1.08997 * 109.47580 * 183.46578 * 19 18 8 34 34 H 1.09005 * 109.47266 * 303.46296 * 19 18 8 35 35 H 1.09002 * 109.47208 * 69.97381 * 20 18 8 36 36 H 1.09001 * 109.47310 * 189.96656 * 20 18 8 37 37 H 1.08993 * 109.47416 * 309.97484 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 0.0006 5 6 4.7899 1.5006 0.0003 6 6 3.6142 -0.7155 -0.0051 7 6 2.3271 -1.1331 0.0005 8 6 1.8598 -2.5658 0.0007 9 6 1.1500 -2.8706 1.3213 10 6 0.9048 -2.7828 -1.1447 11 1 0.6603 -1.9649 -1.8063 12 6 0.3424 -4.0253 -1.3473 13 7 0.6396 -5.0210 -0.5414 14 14 -0.8409 -4.2945 -2.7675 15 1 -1.0074 -3.0253 -3.5204 16 1 -0.2987 -5.3398 -3.6723 17 1 -2.1577 -4.7321 -2.2386 18 7 3.0168 -3.4582 -0.1507 19 6 3.7478 -3.1668 -1.3912 20 6 3.9049 -3.3715 1.0163 21 1 -0.3632 0.0886 -1.0239 22 1 -0.3633 -0.9309 0.4351 23 1 -0.3633 0.8424 0.5887 24 1 5.0830 1.7158 1.0279 25 1 4.5564 2.4330 -0.5137 26 1 5.6093 0.9979 -0.5135 27 1 4.4891 -1.3486 -0.0102 28 1 0.3208 -2.1762 1.4568 29 1 0.7694 -3.8918 1.3020 30 1 1.8542 -2.7609 2.1461 31 1 0.2443 -5.8952 -0.6842 32 1 4.1542 -2.1565 -1.3446 33 1 4.5625 -3.8811 -1.5092 34 1 3.0689 -3.2465 -2.2403 35 1 3.4165 -3.8246 1.8790 36 1 4.8343 -3.9005 0.8057 37 1 4.1227 -2.3251 1.2302 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260434457.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:59 Heat of formation + Delta-G solvation = 93.893827 kcal Electronic energy + Delta-G solvation = -18304.257735 eV Core-core repulsion = 15698.138160 eV Total energy + Delta-G solvation = -2606.119576 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.28702 -38.66489 -34.98600 -34.18644 -31.56726 -30.77539 -29.50630 -28.59248 -26.36438 -26.14372 -24.54838 -22.05070 -21.21824 -19.99120 -18.15867 -17.28832 -16.38408 -16.31553 -15.82199 -15.19035 -15.15388 -14.69466 -14.29017 -13.96562 -13.89042 -13.46906 -13.35685 -13.20368 -12.91807 -12.79125 -12.63707 -12.53436 -12.36128 -12.12981 -11.99999 -11.82810 -11.54040 -11.14486 -10.77214 -10.27939 -9.91131 -8.88641 -8.39381 -7.75038 -5.93019 1.04781 1.46637 1.52318 1.59343 1.84419 2.04807 2.59522 3.35579 3.75495 3.93180 3.99638 4.35725 4.45132 4.57245 4.62666 4.65903 4.68301 4.81189 4.86637 4.90575 5.04750 5.06726 5.12591 5.15633 5.26192 5.32289 5.39365 5.54980 5.59783 5.85584 5.96985 6.20335 6.32055 6.53205 6.81335 6.97501 7.07007 7.30053 7.74338 9.21865 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.010405 C = 0.008944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.028383 B = 2690.313883 C = 3129.806005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.069 3.931 3 N -0.336 5.336 4 N -0.389 5.389 5 C 0.098 3.902 6 C 0.025 3.975 7 C -0.233 4.233 8 C 0.308 3.692 9 C -0.118 4.118 10 C -0.505 4.505 11 H 0.038 0.962 12 C 0.048 3.952 13 N -0.869 5.869 14 Si 0.924 3.076 15 H -0.276 1.276 16 H -0.290 1.290 17 H -0.284 1.284 18 N -0.521 5.521 19 C 0.039 3.961 20 C 0.016 3.984 21 H 0.067 0.933 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.106 0.894 27 H 0.191 0.809 28 H 0.034 0.966 29 H 0.066 0.934 30 H 0.017 0.983 31 H 0.250 0.750 32 H 0.025 0.975 33 H 0.053 0.947 34 H 0.042 0.958 35 H 0.047 0.953 36 H 0.063 0.937 37 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.461 7.754 1.881 10.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.096 4.096 3 N -0.161 5.161 4 N -0.172 5.172 5 C -0.041 4.041 6 C -0.119 4.119 7 C -0.246 4.246 8 C 0.219 3.781 9 C -0.176 4.176 10 C -0.544 4.544 11 H 0.057 0.943 12 C -0.155 4.155 13 N -0.505 5.505 14 Si 0.752 3.248 15 H -0.201 1.201 16 H -0.217 1.217 17 H -0.210 1.210 18 N -0.243 5.243 19 C -0.109 4.109 20 C -0.132 4.132 21 H 0.086 0.914 22 H 0.098 0.902 23 H 0.092 0.908 24 H 0.102 0.898 25 H 0.109 0.891 26 H 0.124 0.876 27 H 0.208 0.792 28 H 0.053 0.947 29 H 0.085 0.915 30 H 0.036 0.964 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 7.451 8.432 1.899 11.412 hybrid contribution -0.384 -0.486 -0.834 1.039 sum 7.068 7.946 1.065 10.688 Atomic orbital electron populations 1.20187 0.86452 1.03020 1.02383 1.22397 0.97634 0.90358 0.99241 1.77021 0.87808 1.23330 1.27961 1.48677 1.05499 1.04979 1.58078 1.22077 0.83040 0.94787 1.04236 1.22924 0.99603 0.84871 1.04513 1.21470 0.92146 0.99114 1.11823 1.16969 0.87546 0.79943 0.93671 1.21769 0.98159 1.02295 0.95374 1.20932 1.25574 0.94956 1.12908 0.94333 1.25348 0.96864 0.96242 0.97084 1.70119 1.42473 1.00910 1.37032 0.86062 0.79911 0.77526 0.81276 1.20118 1.21676 1.21018 1.62311 1.07261 1.54191 1.00566 1.22273 0.96828 0.97684 0.94156 1.22585 0.96572 0.99026 0.95037 0.91412 0.90205 0.90823 0.89761 0.89149 0.87566 0.79235 0.94749 0.91532 0.96385 0.93999 0.95665 0.92806 0.93866 0.93390 0.91835 0.95417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.36 9.18 71.24 0.65 -1.71 16 2 C 0.07 2.90 6.93 43.10 0.30 3.20 16 3 N -0.34 -13.40 12.58 -47.39 -0.60 -14.00 16 4 N -0.39 -13.15 4.01 -369.58 -1.48 -14.63 16 5 C 0.10 2.06 11.47 127.77 1.47 3.53 16 6 C 0.02 0.91 7.50 83.54 0.63 1.54 16 7 C -0.23 -9.97 4.11 -20.14 -0.08 -10.05 16 8 C 0.31 14.41 0.06 2.04 0.00 14.41 16 9 C -0.12 -5.57 7.86 71.98 0.57 -5.01 16 10 C -0.50 -26.14 5.48 25.60 0.14 -26.00 16 11 H 0.04 2.08 7.20 -2.91 -0.02 2.06 16 12 C 0.05 2.52 5.23 84.66 0.44 2.96 16 13 N -0.87 -47.59 10.78 21.45 0.23 -47.36 16 14 Si 0.92 42.81 29.54 68.60 2.03 44.83 16 15 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 16 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 18 N -0.52 -23.30 4.15 -907.30 -3.76 -27.06 16 19 C 0.04 1.60 8.81 127.69 1.13 2.72 16 20 C 0.02 0.60 8.20 127.69 1.05 1.65 16 21 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 22 H 0.08 3.23 5.14 -2.39 -0.01 3.22 16 23 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 24 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 25 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.19 6.12 4.54 -2.91 -0.01 6.10 16 28 H 0.03 1.56 5.73 -2.39 -0.01 1.55 16 29 H 0.07 3.50 6.00 -2.39 -0.01 3.48 16 30 H 0.02 0.77 6.40 -2.38 -0.02 0.76 16 31 H 0.25 13.34 8.31 -92.71 -0.77 12.57 16 32 H 0.03 0.94 4.34 -2.39 -0.01 0.93 16 33 H 0.05 1.95 8.09 -2.39 -0.02 1.93 16 34 H 0.04 2.01 7.02 -2.38 -0.02 1.99 16 35 H 0.05 1.88 6.78 -2.39 -0.02 1.87 16 36 H 0.06 2.06 7.99 -2.39 -0.02 2.04 16 37 H 0.03 0.97 4.58 -2.39 -0.01 0.96 16 Total: -1.00 -62.68 280.04 3.77 -58.91 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 1.07 Total: 12.07 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: 6.28 Total: -12.77 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -5.61 Total: -103.04 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -62.68 3.77 -58.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260434457.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.800 kcal (2) G-P(sol) polarization free energy of solvation -62.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds