Wall clock time and date at job start Mon Mar 30 2020 03:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30839 * 125.89429 * 2 1 4 4 N 1.40087 * 108.20145 * 179.97438 * 3 2 1 5 5 C 1.46503 * 126.03667 * 179.97438 * 4 3 2 6 6 C 1.34949 * 107.92730 * 359.97438 * 4 3 2 7 7 C 1.35308 * 107.74672 * 359.97438 * 6 4 3 8 8 C 1.50699 * 126.04162 * 180.02562 * 7 6 4 9 9 C 1.53002 * 109.47039 * 235.99537 * 8 7 6 10 10 C 1.50706 * 109.47361 * 115.99788 * 8 7 6 11 11 H 1.08003 * 119.99255 * 4.24986 * 10 8 7 12 12 C 1.37868 * 120.00068 * 184.25330 * 10 8 7 13 13 N 1.31518 * 120.00160 * 355.52777 * 12 10 8 14 14 Si 1.86797 * 119.99937 * 175.53411 * 12 10 8 15 15 H 1.48498 * 109.47419 * 59.99634 * 14 12 10 16 16 H 1.48507 * 109.47222 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47311 * 299.99713 * 14 12 10 18 18 N 1.46893 * 109.47052 * 355.99708 * 8 7 6 19 19 C 1.46901 * 111.00234 * 299.95055 * 18 8 7 20 20 C 1.46900 * 111.00075 * 63.90686 * 18 8 7 21 21 H 1.09001 * 109.46755 * 90.03457 * 1 2 3 22 22 H 1.09001 * 109.47216 * 210.02530 * 1 2 3 23 23 H 1.08994 * 109.47250 * 330.03002 * 1 2 3 24 24 H 1.08997 * 109.47266 * 270.02569 * 5 4 3 25 25 H 1.09005 * 109.47207 * 30.02563 * 5 4 3 26 26 H 1.09000 * 109.47208 * 150.02052 * 5 4 3 27 27 H 1.07997 * 126.12357 * 179.73844 * 6 4 3 28 28 H 1.09003 * 109.47022 * 60.00117 * 9 8 7 29 29 H 1.09005 * 109.46828 * 179.97438 * 9 8 7 30 30 H 1.08997 * 109.47571 * 299.99844 * 9 8 7 31 31 H 0.97003 * 120.00039 * 180.02562 * 13 12 10 32 32 H 1.09009 * 109.47162 * 63.67697 * 19 18 8 33 33 H 1.09001 * 109.47764 * 183.67897 * 19 18 8 34 34 H 1.09000 * 109.47279 * 303.68380 * 19 18 8 35 35 H 1.08997 * 109.47405 * 68.75166 * 20 18 8 36 36 H 1.09000 * 109.47100 * 188.75591 * 20 18 8 37 37 H 1.08995 * 109.46945 * 308.75112 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 6 4.7899 1.5009 0.0003 6 6 3.6142 -0.7153 0.0015 7 6 2.3272 -1.1330 0.0021 8 6 1.8600 -2.5657 0.0037 9 6 0.9348 -2.8018 -1.1918 10 6 1.1123 -2.8489 1.2812 11 1 0.9282 -2.0523 1.9869 12 6 0.6633 -4.1246 1.5488 13 7 0.8095 -5.0750 0.6516 14 14 -0.1529 -4.5033 3.1859 15 1 -1.3627 -3.6567 3.3434 16 1 -0.5431 -5.9356 3.2249 17 1 0.7977 -4.2184 4.2906 18 7 3.0217 -3.4597 -0.0920 19 6 3.7757 -3.2125 -1.3283 20 6 3.8869 -3.3268 1.0877 21 1 -0.3633 -0.0006 -1.0277 22 1 -0.3634 -0.8898 0.5142 23 1 -0.3633 0.8902 0.5133 24 1 5.0828 1.7155 -1.0274 25 1 4.5563 2.4336 0.5138 26 1 5.6093 0.9985 0.5143 27 1 4.4892 -1.3484 -0.0018 28 1 1.4757 -2.5971 -2.1157 29 1 0.5973 -3.8383 -1.1908 30 1 0.0728 -2.1386 -1.1207 31 1 0.4932 -5.9725 0.8398 32 1 4.1821 -2.2012 -1.3101 33 1 4.5920 -3.9308 -1.4060 34 1 3.1126 -3.3221 -2.1864 35 1 3.3743 -3.7292 1.9614 36 1 4.8125 -3.8785 0.9234 37 1 4.1159 -2.2742 1.2536 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260434470.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:04 Heat of formation + Delta-G solvation = 113.186910 kcal Electronic energy + Delta-G solvation = -18305.964278 eV Core-core repulsion = 15700.681313 eV Total energy + Delta-G solvation = -2605.282965 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.74965 -36.97152 -33.48659 -32.31921 -29.89176 -29.40164 -27.88002 -26.87651 -24.80618 -24.44828 -22.82647 -20.46097 -19.65339 -18.32355 -16.48691 -15.61895 -14.93837 -14.53253 -14.09221 -13.68047 -13.46003 -13.07592 -12.93342 -12.52725 -12.34116 -11.96886 -11.88761 -11.49604 -11.30526 -11.18763 -10.89581 -10.77254 -10.67022 -10.32020 -10.18907 -10.09908 -9.78277 -9.42987 -8.97930 -8.42625 -8.26693 -7.29983 -6.69799 -5.78677 -3.91969 2.56414 3.14198 3.37697 3.43158 3.45964 3.67452 4.53444 4.94291 5.24855 5.35110 5.45096 5.54353 5.64482 5.70303 6.04092 6.20867 6.26714 6.33960 6.43310 6.46957 6.60408 6.67959 6.70165 6.86960 6.89734 7.04747 7.13053 7.31589 7.42677 7.51799 7.71801 7.92479 8.05906 8.34986 8.46510 8.71368 8.82480 9.17262 9.73299 11.21042 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.025810 B = 0.010268 C = 0.009132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.589699 B = 2726.186905 C = 3065.468203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.087 3.913 3 N -0.320 5.320 4 N -0.396 5.396 5 C 0.112 3.888 6 C 0.014 3.986 7 C -0.199 4.199 8 C 0.307 3.693 9 C -0.124 4.124 10 C -0.514 4.514 11 H 0.053 0.947 12 C 0.087 3.913 13 N -0.843 5.843 14 Si 0.875 3.125 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.280 1.280 18 N -0.495 5.495 19 C 0.009 3.991 20 C 0.036 3.964 21 H 0.065 0.935 22 H 0.100 0.900 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.173 0.827 28 H 0.007 0.993 29 H 0.088 0.912 30 H 0.037 0.963 31 H 0.255 0.745 32 H 0.013 0.987 33 H 0.042 0.958 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.031 0.969 37 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.453 6.717 -2.140 8.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.080 4.080 3 N -0.144 5.144 4 N -0.180 5.180 5 C -0.030 4.030 6 C -0.128 4.128 7 C -0.212 4.212 8 C 0.218 3.782 9 C -0.182 4.182 10 C -0.553 4.553 11 H 0.071 0.929 12 C -0.120 4.120 13 N -0.478 5.478 14 Si 0.703 3.297 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.206 1.206 18 N -0.217 5.217 19 C -0.140 4.140 20 C -0.113 4.113 21 H 0.084 0.916 22 H 0.119 0.881 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.190 0.810 28 H 0.026 0.974 29 H 0.106 0.894 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.031 0.969 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 5.437 7.351 -2.210 9.407 hybrid contribution 0.226 -0.251 0.992 1.048 sum 5.663 7.100 -1.218 9.163 Atomic orbital electron populations 1.20297 0.87201 1.03532 1.02063 1.22138 0.96720 0.90281 0.98825 1.77082 0.86607 1.23326 1.27411 1.48232 1.04924 1.04691 1.60152 1.21588 0.84457 0.94822 1.02173 1.22778 0.99968 0.83984 1.06036 1.21564 0.90850 0.99777 1.08961 1.17156 0.87099 0.78530 0.95369 1.21876 0.97972 1.03891 0.94460 1.20716 1.36371 0.94417 1.03801 0.92871 1.24865 0.94987 0.96451 0.95655 1.70016 1.43756 1.01465 1.32554 0.86963 0.80020 0.77138 0.85559 1.20399 1.21484 1.20578 1.62407 1.06651 1.53757 0.98880 1.22686 0.97830 0.97371 0.96122 1.22295 0.95025 0.97681 0.96274 0.91614 0.88141 0.92601 0.91900 0.90185 0.90425 0.81008 0.97381 0.89367 0.94425 0.93474 0.96880 0.93930 0.92126 0.91062 0.95004 0.96638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.36 8.72 36.01 0.31 -1.05 16 2 C 0.09 1.85 7.04 -82.40 -0.58 1.27 16 3 N -0.32 -6.66 12.58 33.67 0.42 -6.24 16 4 N -0.40 -7.29 4.01 -68.16 -0.27 -7.57 16 5 C 0.11 1.40 11.47 59.85 0.69 2.09 16 6 C 0.01 0.28 7.50 -17.23 -0.13 0.15 16 7 C -0.20 -4.38 4.11 -105.06 -0.43 -4.81 16 8 C 0.31 7.24 0.09 -133.91 -0.01 7.23 16 9 C -0.12 -2.90 7.89 37.16 0.29 -2.61 16 10 C -0.51 -13.24 5.34 -34.44 -0.18 -13.42 16 11 H 0.05 1.42 7.57 -52.48 -0.40 1.02 16 12 C 0.09 2.26 4.97 -17.82 -0.09 2.17 16 13 N -0.84 -22.77 10.87 55.43 0.60 -22.17 16 14 Si 0.88 20.56 29.54 -169.99 -5.02 15.54 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 N -0.49 -11.33 4.01 -238.12 -0.95 -12.29 16 19 C 0.01 0.17 8.76 60.06 0.53 0.70 16 20 C 0.04 0.76 8.55 60.06 0.51 1.28 16 21 H 0.07 1.13 7.89 -51.93 -0.41 0.72 16 22 H 0.10 2.04 6.06 -51.93 -0.31 1.72 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.17 3.12 4.50 -52.49 -0.24 2.88 16 28 H 0.01 0.16 6.32 -51.93 -0.33 -0.17 16 29 H 0.09 2.28 6.25 -51.93 -0.32 1.95 16 30 H 0.04 0.83 5.66 -51.93 -0.29 0.54 16 31 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 32 H 0.01 0.25 4.40 -51.92 -0.23 0.02 16 33 H 0.04 0.77 8.10 -51.93 -0.42 0.35 16 34 H 0.06 1.23 6.11 -51.93 -0.32 0.91 16 35 H 0.07 1.69 7.12 -51.93 -0.37 1.32 16 36 H 0.03 0.60 8.01 -51.93 -0.42 0.18 16 37 H 0.02 0.32 4.46 -51.93 -0.23 0.09 16 LS Contribution 280.11 15.07 4.22 4.22 Total: -1.00 -29.47 280.11 -5.21 -34.67 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -5.11 Total: 0.82 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: 0.91 Total: -6.99 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.20 Total: -48.26 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.47 -5.21 -34.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260434470.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.861 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds