Wall clock time and date at job start Mon Mar 30 2020 03:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30839 * 125.89429 * 2 1 4 4 N 1.40087 * 108.20145 * 179.97438 * 3 2 1 5 5 C 1.46503 * 126.03667 * 179.97438 * 4 3 2 6 6 C 1.34949 * 107.92730 * 359.97438 * 4 3 2 7 7 C 1.35308 * 107.74672 * 359.97438 * 6 4 3 8 8 C 1.50699 * 126.04162 * 180.02562 * 7 6 4 9 9 C 1.53002 * 109.47039 * 235.99537 * 8 7 6 10 10 C 1.50706 * 109.47361 * 115.99788 * 8 7 6 11 11 H 1.08003 * 119.99255 * 4.24986 * 10 8 7 12 12 C 1.37868 * 120.00068 * 184.25330 * 10 8 7 13 13 N 1.31518 * 120.00160 * 355.52777 * 12 10 8 14 14 Si 1.86797 * 119.99937 * 175.53411 * 12 10 8 15 15 H 1.48498 * 109.47419 * 59.99634 * 14 12 10 16 16 H 1.48507 * 109.47222 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47311 * 299.99713 * 14 12 10 18 18 N 1.46893 * 109.47052 * 355.99708 * 8 7 6 19 19 C 1.46901 * 111.00234 * 299.95055 * 18 8 7 20 20 C 1.46900 * 111.00075 * 63.90686 * 18 8 7 21 21 H 1.09001 * 109.46755 * 90.03457 * 1 2 3 22 22 H 1.09001 * 109.47216 * 210.02530 * 1 2 3 23 23 H 1.08994 * 109.47250 * 330.03002 * 1 2 3 24 24 H 1.08997 * 109.47266 * 270.02569 * 5 4 3 25 25 H 1.09005 * 109.47207 * 30.02563 * 5 4 3 26 26 H 1.09000 * 109.47208 * 150.02052 * 5 4 3 27 27 H 1.07997 * 126.12357 * 179.73844 * 6 4 3 28 28 H 1.09003 * 109.47022 * 60.00117 * 9 8 7 29 29 H 1.09005 * 109.46828 * 179.97438 * 9 8 7 30 30 H 1.08997 * 109.47571 * 299.99844 * 9 8 7 31 31 H 0.97003 * 120.00039 * 180.02562 * 13 12 10 32 32 H 1.09009 * 109.47162 * 63.67697 * 19 18 8 33 33 H 1.09001 * 109.47764 * 183.67897 * 19 18 8 34 34 H 1.09000 * 109.47279 * 303.68380 * 19 18 8 35 35 H 1.08997 * 109.47405 * 68.75166 * 20 18 8 36 36 H 1.09000 * 109.47100 * 188.75591 * 20 18 8 37 37 H 1.08995 * 109.46945 * 308.75112 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 6 4.7899 1.5009 0.0003 6 6 3.6142 -0.7153 0.0015 7 6 2.3272 -1.1330 0.0021 8 6 1.8600 -2.5657 0.0037 9 6 0.9348 -2.8018 -1.1918 10 6 1.1123 -2.8489 1.2812 11 1 0.9282 -2.0523 1.9869 12 6 0.6633 -4.1246 1.5488 13 7 0.8095 -5.0750 0.6516 14 14 -0.1529 -4.5033 3.1859 15 1 -1.3627 -3.6567 3.3434 16 1 -0.5431 -5.9356 3.2249 17 1 0.7977 -4.2184 4.2906 18 7 3.0217 -3.4597 -0.0920 19 6 3.7757 -3.2125 -1.3283 20 6 3.8869 -3.3268 1.0877 21 1 -0.3633 -0.0006 -1.0277 22 1 -0.3634 -0.8898 0.5142 23 1 -0.3633 0.8902 0.5133 24 1 5.0828 1.7155 -1.0274 25 1 4.5563 2.4336 0.5138 26 1 5.6093 0.9985 0.5143 27 1 4.4892 -1.3484 -0.0018 28 1 1.4757 -2.5971 -2.1157 29 1 0.5973 -3.8383 -1.1908 30 1 0.0728 -2.1386 -1.1207 31 1 0.4932 -5.9725 0.8398 32 1 4.1821 -2.2012 -1.3101 33 1 4.5920 -3.9308 -1.4060 34 1 3.1126 -3.3221 -2.1864 35 1 3.3743 -3.7292 1.9614 36 1 4.8125 -3.8785 0.9234 37 1 4.1159 -2.2742 1.2536 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260434470.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:03 Heat of formation + Delta-G solvation = 93.919223 kcal Electronic energy + Delta-G solvation = -18306.799787 eV Core-core repulsion = 15700.681313 eV Total energy + Delta-G solvation = -2606.118474 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.28500 -38.66307 -34.97031 -34.18036 -31.60806 -30.80361 -29.46239 -28.59153 -26.36427 -26.15287 -24.53296 -22.03354 -21.25242 -19.96773 -18.19139 -17.31753 -16.40272 -16.29207 -15.79138 -15.23024 -15.14036 -14.64746 -14.27161 -13.97281 -13.87149 -13.50300 -13.33231 -13.18889 -12.90074 -12.78368 -12.62515 -12.57891 -12.42295 -12.14417 -11.97132 -11.80410 -11.55030 -11.12993 -10.85310 -10.25874 -9.91126 -8.88646 -8.38872 -7.76662 -5.94065 1.05026 1.48270 1.51293 1.55751 1.84433 2.05030 2.59087 3.35146 3.74813 3.92705 3.99360 4.35273 4.44959 4.58146 4.63450 4.65663 4.66938 4.81003 4.86849 4.89633 5.04705 5.06919 5.10989 5.23986 5.27518 5.33175 5.39564 5.53278 5.60983 5.86107 5.95146 6.19396 6.31898 6.50367 6.79240 6.96511 7.06695 7.30373 7.73126 9.20319 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.025810 B = 0.010268 C = 0.009132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.589699 B = 2726.186905 C = 3065.468203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.067 3.933 3 N -0.335 5.335 4 N -0.389 5.389 5 C 0.099 3.901 6 C 0.024 3.976 7 C -0.231 4.231 8 C 0.309 3.691 9 C -0.115 4.115 10 C -0.514 4.514 11 H 0.035 0.965 12 C 0.052 3.948 13 N -0.865 5.865 14 Si 0.922 3.078 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.283 1.283 18 N -0.520 5.520 19 C 0.015 3.985 20 C 0.043 3.957 21 H 0.078 0.922 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.105 0.895 27 H 0.191 0.809 28 H 0.015 0.985 29 H 0.060 0.940 30 H 0.039 0.961 31 H 0.251 0.749 32 H 0.028 0.972 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.039 0.961 36 H 0.056 0.944 37 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.000 7.823 -2.279 10.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 N -0.160 5.160 4 N -0.173 5.173 5 C -0.041 4.041 6 C -0.119 4.119 7 C -0.244 4.244 8 C 0.219 3.781 9 C -0.173 4.173 10 C -0.553 4.553 11 H 0.054 0.946 12 C -0.152 4.152 13 N -0.500 5.500 14 Si 0.749 3.251 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.209 1.209 18 N -0.242 5.242 19 C -0.134 4.134 20 C -0.105 4.105 21 H 0.096 0.904 22 H 0.098 0.902 23 H 0.089 0.911 24 H 0.102 0.898 25 H 0.109 0.891 26 H 0.124 0.876 27 H 0.207 0.793 28 H 0.034 0.966 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 6.991 8.488 -2.346 11.243 hybrid contribution -0.163 -0.511 1.019 1.151 sum 6.828 7.976 -1.327 10.583 Atomic orbital electron populations 1.20241 0.86416 1.03181 1.02774 1.22413 0.97673 0.90351 0.99409 1.77021 0.87791 1.23329 1.27899 1.48675 1.05507 1.04971 1.58124 1.22074 0.83054 0.94780 1.04222 1.22923 0.99649 0.84837 1.04538 1.21463 0.92215 0.99077 1.11664 1.16939 0.87289 0.79934 0.93893 1.21743 0.98318 1.02034 0.95191 1.20828 1.36282 0.93769 1.04373 0.94625 1.25315 0.95665 0.96534 0.97671 1.70127 1.44939 1.01408 1.33573 0.86229 0.79185 0.76760 0.82899 1.20228 1.21483 1.20903 1.62246 1.07327 1.54274 1.00369 1.22642 0.97758 0.98720 0.94261 1.22189 0.95265 0.98355 0.94679 0.90360 0.90223 0.91075 0.89758 0.89125 0.87635 0.79295 0.96578 0.92120 0.94180 0.93905 0.95423 0.92129 0.93139 0.94244 0.92573 0.95745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.52 8.72 71.24 0.62 -1.90 16 2 C 0.07 2.79 7.04 43.10 0.30 3.10 16 3 N -0.34 -13.34 12.58 -47.38 -0.60 -13.93 16 4 N -0.39 -13.23 4.01 -369.56 -1.48 -14.71 16 5 C 0.10 2.09 11.47 127.77 1.47 3.55 16 6 C 0.02 0.90 7.50 83.54 0.63 1.53 16 7 C -0.23 -9.93 4.11 -20.14 -0.08 -10.01 16 8 C 0.31 14.47 0.09 2.04 0.00 14.47 16 9 C -0.11 -5.41 7.89 71.98 0.57 -4.84 16 10 C -0.51 -26.72 5.34 25.60 0.14 -26.59 16 11 H 0.04 1.94 7.57 -2.91 -0.02 1.92 16 12 C 0.05 2.74 4.97 84.65 0.42 3.16 16 13 N -0.86 -47.33 10.87 21.44 0.23 -47.10 16 14 Si 0.92 42.73 29.54 68.60 2.03 44.76 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 16 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 17 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 18 N -0.52 -23.31 4.01 -907.27 -3.64 -26.94 16 19 C 0.01 0.55 8.76 127.69 1.12 1.66 16 20 C 0.04 1.80 8.55 127.69 1.09 2.89 16 21 H 0.08 2.65 7.89 -2.39 -0.02 2.63 16 22 H 0.08 3.28 6.06 -2.39 -0.01 3.27 16 23 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 24 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 26 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.19 6.21 4.50 -2.91 -0.01 6.20 16 28 H 0.02 0.69 6.32 -2.39 -0.02 0.67 16 29 H 0.06 3.18 6.25 -2.38 -0.01 3.17 16 30 H 0.04 1.79 5.66 -2.39 -0.01 1.78 16 31 H 0.25 13.45 8.31 -92.71 -0.77 12.68 16 32 H 0.03 0.96 4.40 -2.38 -0.01 0.95 16 33 H 0.06 2.03 8.10 -2.39 -0.02 2.01 16 34 H 0.05 1.98 6.11 -2.39 -0.01 1.96 16 35 H 0.04 1.86 7.12 -2.39 -0.02 1.84 16 36 H 0.06 2.00 8.01 -2.39 -0.02 1.98 16 37 H 0.02 0.96 4.46 -2.39 -0.01 0.94 16 Total: -1.00 -62.58 280.11 3.89 -58.70 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 1.07 Total: 12.20 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 6.27 Total: -12.97 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -5.48 Total: -102.68 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -62.58 3.89 -58.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260434470.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.617 kcal (2) G-P(sol) polarization free energy of solvation -62.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds