Wall clock time and date at job start Mon Mar 30 2020 03:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46772 * 2 1 4 4 C 1.52998 * 109.46828 * 119.99986 * 2 1 3 5 5 H 1.08997 * 109.47651 * 305.63343 * 4 2 1 6 6 C 1.50707 * 109.47028 * 185.63662 * 4 2 1 7 7 C 1.35319 * 126.12555 * 325.29983 * 6 4 2 8 8 C 1.39867 * 107.92099 * 180.14575 * 7 6 4 9 9 N 1.30834 * 108.20103 * 359.59255 * 8 7 6 10 10 N 1.34940 * 126.13015 * 144.99787 * 6 4 2 11 11 C 1.46506 * 126.03532 * 0.02562 * 10 6 4 12 12 C 1.52997 * 109.47168 * 65.64214 * 4 2 1 13 13 H 1.08997 * 109.47072 * 172.42276 * 12 4 2 14 14 N 1.46896 * 109.47583 * 52.42286 * 12 4 2 15 15 C 1.50702 * 109.46744 * 292.41911 * 12 4 2 16 16 H 1.07996 * 120.00259 * 355.20328 * 15 12 4 17 17 C 1.37883 * 119.99889 * 175.19637 * 15 12 4 18 18 N 1.31520 * 119.99819 * 0.02562 * 17 15 12 19 19 Si 1.86793 * 119.99949 * 180.02562 * 17 15 12 20 20 H 1.48505 * 109.47209 * 90.00159 * 19 17 15 21 21 H 1.48504 * 109.47099 * 210.00080 * 19 17 15 22 22 H 1.48493 * 109.47128 * 329.99963 * 19 17 15 23 23 H 1.09000 * 109.47551 * 286.15847 * 1 2 3 24 24 H 1.08994 * 109.47502 * 46.16461 * 1 2 3 25 25 H 1.09008 * 109.47093 * 166.15985 * 1 2 3 26 26 H 1.08998 * 109.47078 * 240.00508 * 2 1 3 27 27 H 1.09007 * 109.46822 * 179.97438 * 3 2 1 28 28 H 1.08990 * 109.47285 * 300.00200 * 3 2 1 29 29 H 1.08998 * 109.46904 * 60.00401 * 3 2 1 30 30 H 1.08002 * 126.04011 * 0.02562 * 7 6 4 31 31 H 1.08000 * 125.90463 * 179.86297 * 8 7 6 32 32 H 1.08997 * 109.46935 * 269.97073 * 11 10 6 33 33 H 1.09000 * 109.47193 * 29.96975 * 11 10 6 34 34 H 1.08997 * 109.47013 * 149.97587 * 11 10 6 35 35 H 1.00898 * 111.00529 * 176.04655 * 14 12 4 36 36 H 1.00911 * 110.99851 * 300.00467 * 14 12 4 37 37 H 0.96992 * 119.99766 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.5966 -0.2690 2.1364 6 6 3.5405 -0.6016 1.3211 7 6 4.3911 -0.5897 0.2687 8 6 5.6918 -0.4670 0.7681 9 7 5.6239 -0.3984 2.0729 10 7 4.2761 -0.4813 2.4459 11 6 3.7570 -0.4443 3.8154 12 6 1.6490 -2.1988 1.1804 13 1 2.1247 -2.7390 1.9988 14 7 2.0917 -2.7633 -0.1015 15 6 0.1520 -2.3282 1.2960 16 1 -0.4526 -1.4536 1.4850 17 6 -0.4458 -3.5633 1.1604 18 7 0.2906 -4.6285 0.9306 19 14 -2.3013 -3.7236 1.3031 20 1 -2.9173 -3.5546 -0.0376 21 1 -2.6425 -5.0659 1.8390 22 1 -2.8193 -2.6778 2.2213 23 1 -0.3634 0.2860 0.9870 24 1 -0.3634 0.7117 -0.7412 25 1 -0.3634 -0.9979 -0.2458 26 1 1.8933 -0.5137 -0.8900 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 4.1147 -0.6641 -0.7727 31 1 6.5958 -0.4303 0.1783 32 1 3.5496 0.5878 4.0976 33 1 2.8382 -1.0280 3.8715 34 1 4.4971 -0.8653 4.4959 35 1 1.9027 -3.7535 -0.1452 36 1 1.6643 -2.2790 -0.8768 37 1 -0.1298 -5.4974 0.8356 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260661665.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:21 Heat of formation + Delta-G solvation = 70.651655 kcal Electronic energy + Delta-G solvation = -17979.057685 eV Core-core repulsion = 15371.930253 eV Total energy + Delta-G solvation = -2607.127432 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.69230 -37.19818 -33.35584 -32.70197 -31.02378 -29.68873 -27.27170 -26.18168 -26.00394 -25.02039 -21.11851 -20.56634 -19.84646 -18.00138 -16.76941 -15.97040 -15.23515 -14.75001 -14.28536 -13.92038 -13.77596 -13.02895 -12.90983 -12.79615 -12.30128 -12.10085 -11.94325 -11.81230 -11.69335 -11.23831 -11.05307 -10.86485 -10.72115 -10.49557 -10.19007 -9.97875 -9.77942 -9.63100 -9.33987 -8.60462 -8.43363 -7.66219 -7.08038 -6.05614 -4.21383 2.59650 3.14553 3.19008 3.27964 3.29701 3.57970 4.30032 5.09813 5.12679 5.36223 5.49648 5.52533 5.65592 5.69430 5.79900 5.91727 6.05875 6.28792 6.36581 6.39724 6.44581 6.50230 6.55690 6.68051 6.71923 6.92358 6.96738 7.23076 7.33542 7.34054 7.62356 7.70830 7.76222 8.11541 8.38013 8.70278 9.04229 9.22968 9.49807 10.88675 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028598 B = 0.008519 C = 0.007823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.860805 B = 3286.161044 C = 3578.270517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.070 4.070 3 C -0.151 4.151 4 C -0.012 4.012 5 H 0.063 0.937 6 C 0.134 3.866 7 C -0.260 4.260 8 C 0.036 3.964 9 N -0.325 5.325 10 N -0.380 5.380 11 C 0.103 3.897 12 C 0.227 3.773 13 H 0.027 0.973 14 N -0.847 5.847 15 C -0.550 4.550 16 H 0.071 0.929 17 C 0.064 3.936 18 N -0.893 5.893 19 Si 0.890 3.110 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.045 0.955 24 H 0.028 0.972 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.141 0.859 31 H 0.172 0.828 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.356 0.644 36 H 0.310 0.690 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.940 8.052 -0.213 8.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.089 4.089 3 C -0.209 4.209 4 C -0.033 4.033 5 H 0.081 0.919 6 C 0.006 3.994 7 C -0.289 4.289 8 C -0.149 4.149 9 N -0.147 5.147 10 N -0.163 5.163 11 C -0.039 4.039 12 C 0.116 3.884 13 H 0.045 0.955 14 N -0.379 5.379 15 C -0.590 4.590 16 H 0.089 0.911 17 C -0.138 4.138 18 N -0.533 5.533 19 Si 0.718 3.282 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.065 0.935 24 H 0.047 0.953 25 H 0.111 0.889 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.158 0.842 31 H 0.189 0.811 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.173 0.827 36 H 0.120 0.880 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.303 8.179 1.248 9.326 hybrid contribution -2.502 -0.590 -0.657 2.653 sum 1.801 7.589 0.591 7.823 Atomic orbital electron populations 1.22298 0.94922 1.03321 0.99822 1.20853 0.95942 0.93998 0.98118 1.22007 1.01398 0.97118 1.00334 1.20163 0.85085 1.00124 0.97929 0.91857 1.21296 0.95551 0.96594 0.85913 1.20979 0.91135 1.17314 0.99487 1.23664 0.98495 1.00770 0.91947 1.77172 0.95679 1.27074 1.14731 1.48340 1.04241 1.57769 1.05959 1.21735 1.00222 1.02427 0.79566 1.18758 0.92424 0.86702 0.90517 0.95468 1.59505 1.64193 1.10523 1.03688 1.22306 0.93591 0.94081 1.48995 0.91060 1.25004 0.98086 0.95759 0.94979 1.69661 1.35081 0.99101 1.49461 0.86630 0.85794 0.77444 0.78351 1.20646 1.21308 1.19919 0.93548 0.95334 0.88864 0.90433 0.92404 0.93598 0.93940 0.84168 0.81142 0.91675 0.89211 0.90073 0.82660 0.87965 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 7.53 37.16 0.28 -2.33 16 2 C -0.07 -1.22 1.73 -90.62 -0.16 -1.38 16 3 C -0.15 -2.33 8.78 37.16 0.33 -2.01 16 4 C -0.01 -0.23 1.45 -91.77 -0.13 -0.37 16 5 H 0.06 1.23 7.41 -51.93 -0.38 0.84 16 6 C 0.13 2.55 4.76 -82.26 -0.39 2.16 16 7 C -0.26 -4.77 8.36 -40.01 -0.33 -5.11 16 8 C 0.04 0.63 12.03 -17.37 -0.21 0.42 16 9 N -0.32 -6.19 12.58 30.62 0.39 -5.80 16 10 N -0.38 -7.08 4.01 -63.88 -0.26 -7.34 16 11 C 0.10 1.53 11.06 59.85 0.66 2.19 16 12 C 0.23 5.22 2.54 -68.87 -0.17 5.05 16 13 H 0.03 0.73 8.13 -51.93 -0.42 0.31 16 14 N -0.85 -19.19 8.58 -5.66 -0.05 -19.24 16 15 C -0.55 -13.33 6.17 -34.44 -0.21 -13.54 16 16 H 0.07 1.68 4.95 -52.49 -0.26 1.42 16 17 C 0.06 1.61 5.37 -17.82 -0.10 1.52 16 18 N -0.89 -23.75 11.23 55.43 0.62 -23.13 16 19 Si 0.89 19.98 29.54 -169.99 -5.02 14.96 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H 0.05 0.83 7.08 -51.93 -0.37 0.46 16 24 H 0.03 0.44 8.07 -51.93 -0.42 0.02 16 25 H 0.09 1.88 5.68 -51.92 -0.30 1.59 16 26 H 0.08 1.40 5.70 -51.93 -0.30 1.10 16 27 H 0.06 0.92 5.98 -51.92 -0.31 0.61 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.14 2.47 7.53 -52.49 -0.40 2.07 16 31 H 0.17 2.34 8.06 -52.49 -0.42 1.91 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.35 7.55 -51.93 -0.39 0.96 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.36 8.91 6.72 -39.29 -0.26 8.64 16 36 H 0.31 6.69 6.86 -39.29 -0.27 6.42 16 37 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 287.64 15.07 4.33 4.33 Total: -1.00 -27.28 287.64 -5.75 -33.03 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -5.32 Total: 16.58 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -0.44 Total: -13.39 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 0.70 Total: -55.50 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.28 -5.75 -33.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260661665.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.677 kcal (2) G-P(sol) polarization free energy of solvation -27.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds