Wall clock time and date at job start Mon Mar 30 2020 03:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46772 * 2 1 4 4 C 1.52998 * 109.46828 * 119.99986 * 2 1 3 5 5 H 1.08997 * 109.47651 * 305.63343 * 4 2 1 6 6 C 1.50707 * 109.47028 * 185.63662 * 4 2 1 7 7 C 1.35319 * 126.12555 * 325.29983 * 6 4 2 8 8 C 1.39867 * 107.92099 * 180.14575 * 7 6 4 9 9 N 1.30834 * 108.20103 * 359.59255 * 8 7 6 10 10 N 1.34940 * 126.13015 * 144.99787 * 6 4 2 11 11 C 1.46506 * 126.03532 * 0.02562 * 10 6 4 12 12 C 1.52997 * 109.47168 * 65.64214 * 4 2 1 13 13 H 1.08997 * 109.47072 * 172.42276 * 12 4 2 14 14 N 1.46896 * 109.47583 * 52.42286 * 12 4 2 15 15 C 1.50702 * 109.46744 * 292.41911 * 12 4 2 16 16 H 1.07996 * 120.00259 * 355.20328 * 15 12 4 17 17 C 1.37883 * 119.99889 * 175.19637 * 15 12 4 18 18 N 1.31520 * 119.99819 * 0.02562 * 17 15 12 19 19 Si 1.86793 * 119.99949 * 180.02562 * 17 15 12 20 20 H 1.48505 * 109.47209 * 90.00159 * 19 17 15 21 21 H 1.48504 * 109.47099 * 210.00080 * 19 17 15 22 22 H 1.48493 * 109.47128 * 329.99963 * 19 17 15 23 23 H 1.09000 * 109.47551 * 286.15847 * 1 2 3 24 24 H 1.08994 * 109.47502 * 46.16461 * 1 2 3 25 25 H 1.09008 * 109.47093 * 166.15985 * 1 2 3 26 26 H 1.08998 * 109.47078 * 240.00508 * 2 1 3 27 27 H 1.09007 * 109.46822 * 179.97438 * 3 2 1 28 28 H 1.08990 * 109.47285 * 300.00200 * 3 2 1 29 29 H 1.08998 * 109.46904 * 60.00401 * 3 2 1 30 30 H 1.08002 * 126.04011 * 0.02562 * 7 6 4 31 31 H 1.08000 * 125.90463 * 179.86297 * 8 7 6 32 32 H 1.08997 * 109.46935 * 269.97073 * 11 10 6 33 33 H 1.09000 * 109.47193 * 29.96975 * 11 10 6 34 34 H 1.08997 * 109.47013 * 149.97587 * 11 10 6 35 35 H 1.00898 * 111.00529 * 176.04655 * 14 12 4 36 36 H 1.00911 * 110.99851 * 300.00467 * 14 12 4 37 37 H 0.96992 * 119.99766 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.5966 -0.2690 2.1364 6 6 3.5405 -0.6016 1.3211 7 6 4.3911 -0.5897 0.2687 8 6 5.6918 -0.4670 0.7681 9 7 5.6239 -0.3984 2.0729 10 7 4.2761 -0.4813 2.4459 11 6 3.7570 -0.4443 3.8154 12 6 1.6490 -2.1988 1.1804 13 1 2.1247 -2.7390 1.9988 14 7 2.0917 -2.7633 -0.1015 15 6 0.1520 -2.3282 1.2960 16 1 -0.4526 -1.4536 1.4850 17 6 -0.4458 -3.5633 1.1604 18 7 0.2906 -4.6285 0.9306 19 14 -2.3013 -3.7236 1.3031 20 1 -2.9173 -3.5546 -0.0376 21 1 -2.6425 -5.0659 1.8390 22 1 -2.8193 -2.6778 2.2213 23 1 -0.3634 0.2860 0.9870 24 1 -0.3634 0.7117 -0.7412 25 1 -0.3634 -0.9979 -0.2458 26 1 1.8933 -0.5137 -0.8900 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 4.1147 -0.6641 -0.7727 31 1 6.5958 -0.4303 0.1783 32 1 3.5496 0.5878 4.0976 33 1 2.8382 -1.0280 3.8715 34 1 4.4971 -0.8653 4.4959 35 1 1.9027 -3.7535 -0.1452 36 1 1.6643 -2.2790 -0.8768 37 1 -0.1298 -5.4974 0.8356 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260661665.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:20 Heat of formation + Delta-G solvation = 53.403977 kcal Electronic energy + Delta-G solvation = -17979.805600 eV Core-core repulsion = 15371.930253 eV Total energy + Delta-G solvation = -2607.875347 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.10882 -38.78813 -35.11113 -34.03388 -32.77781 -31.20899 -28.92389 -27.54765 -27.41334 -26.71815 -22.77221 -22.06532 -21.22479 -19.49301 -18.58068 -17.47685 -16.96248 -16.15955 -16.07489 -15.32935 -15.23719 -14.60534 -14.38281 -14.28918 -13.78565 -13.62102 -13.36863 -13.13373 -13.06969 -12.90154 -12.76019 -12.56543 -12.27964 -12.16891 -11.68178 -11.66217 -11.25583 -11.16936 -11.04911 -10.41888 -9.92910 -9.10892 -8.97369 -7.98165 -6.19719 1.16854 1.40237 1.44513 1.51238 1.83649 2.17226 2.43149 3.17005 3.82848 3.90888 4.08214 4.30872 4.39739 4.42152 4.54210 4.58123 4.63570 4.83907 4.93998 4.95307 5.02542 5.07013 5.15906 5.21136 5.30121 5.46219 5.49778 5.68041 5.76256 5.81953 5.91040 5.99369 6.18783 6.32109 6.79823 6.97743 7.15373 7.28671 7.53971 8.93372 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028598 B = 0.008519 C = 0.007823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.860805 B = 3286.161044 C = 3578.270517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 C -0.141 4.141 4 C -0.001 4.001 5 H 0.061 0.939 6 C 0.117 3.883 7 C -0.266 4.266 8 C 0.037 3.963 9 N -0.344 5.344 10 N -0.390 5.390 11 C 0.096 3.904 12 C 0.232 3.768 13 H -0.017 1.017 14 N -0.839 5.839 15 C -0.547 4.547 16 H 0.079 0.921 17 C 0.017 3.983 18 N -0.922 5.922 19 Si 0.946 3.054 20 H -0.277 1.277 21 H -0.294 1.294 22 H -0.269 1.269 23 H 0.042 0.958 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.146 0.854 31 H 0.206 0.794 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.342 0.658 36 H 0.317 0.683 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.754 9.659 -0.633 10.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.084 4.084 3 C -0.199 4.199 4 C -0.022 4.022 5 H 0.079 0.921 6 C -0.010 4.010 7 C -0.294 4.294 8 C -0.148 4.148 9 N -0.166 5.166 10 N -0.173 5.173 11 C -0.045 4.045 12 C 0.121 3.879 13 H 0.001 0.999 14 N -0.370 5.370 15 C -0.586 4.586 16 H 0.097 0.903 17 C -0.182 4.182 18 N -0.564 5.564 19 Si 0.773 3.227 20 H -0.202 1.202 21 H -0.221 1.221 22 H -0.193 1.193 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.163 0.837 31 H 0.222 0.778 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.158 0.842 36 H 0.128 0.872 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.112 9.816 0.836 10.675 hybrid contribution -2.401 -1.086 -0.515 2.685 sum 1.711 8.730 0.321 8.902 Atomic orbital electron populations 1.22168 0.94971 1.02364 1.00347 1.20803 0.95755 0.95255 0.96616 1.21895 1.01010 0.95467 1.01501 1.19954 0.85724 0.97584 0.98954 0.92090 1.21305 0.95380 0.97624 0.86712 1.21156 0.91593 1.17083 0.99618 1.24229 0.99444 0.99463 0.91650 1.77137 0.96005 1.27787 1.15671 1.48635 1.04167 1.57590 1.06875 1.21949 1.00146 1.03962 0.78485 1.18607 0.91536 0.88617 0.89135 0.99935 1.59471 1.64052 1.09578 1.03884 1.22583 0.94327 0.94118 1.47583 0.90343 1.25661 1.01530 0.95737 0.95238 1.69786 1.36351 0.99330 1.50895 0.85735 0.81704 0.76910 0.78321 1.20248 1.22075 1.19313 0.93867 0.92842 0.91530 0.91024 0.92877 0.91599 0.93572 0.83674 0.77755 0.89281 0.90044 0.88844 0.84223 0.87166 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 7.53 71.98 0.54 -4.21 16 2 C -0.07 -2.16 1.73 -10.79 -0.02 -2.18 16 3 C -0.14 -3.98 8.78 71.98 0.63 -3.35 16 4 C 0.00 -0.05 1.45 -11.54 -0.02 -0.07 16 5 H 0.06 2.33 7.41 -2.39 -0.02 2.31 16 6 C 0.12 4.39 4.76 41.41 0.20 4.59 16 7 C -0.27 -9.38 8.36 21.99 0.18 -9.19 16 8 C 0.04 1.21 12.03 85.24 1.02 2.23 16 9 N -0.34 -12.62 12.58 -57.03 -0.72 -13.34 16 10 N -0.39 -14.17 4.01 -356.02 -1.43 -15.60 16 11 C 0.10 2.77 11.06 127.77 1.41 4.19 16 12 C 0.23 10.81 2.54 44.17 0.11 10.93 16 13 H -0.02 -0.96 8.13 -2.39 -0.02 -0.98 16 14 N -0.84 -38.38 8.58 -171.81 -1.47 -39.85 16 15 C -0.55 -26.52 6.17 25.60 0.16 -26.36 16 16 H 0.08 3.65 4.95 -2.91 -0.01 3.63 16 17 C 0.02 0.87 5.37 84.66 0.45 1.32 16 18 N -0.92 -49.89 11.23 21.45 0.24 -49.65 16 19 Si 0.95 40.98 29.54 68.60 2.03 43.01 16 20 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 21 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 23 H 0.04 1.46 7.08 -2.39 -0.02 1.44 16 24 H 0.05 1.52 8.07 -2.39 -0.02 1.50 16 25 H 0.07 2.60 5.68 -2.38 -0.01 2.59 16 26 H 0.07 2.48 5.70 -2.39 -0.01 2.46 16 27 H 0.05 1.56 5.98 -2.38 -0.01 1.54 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.15 4.89 7.53 -2.91 -0.02 4.87 16 31 H 0.21 5.02 8.06 -2.91 -0.02 5.00 16 32 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.08 2.47 7.55 -2.39 -0.02 2.45 16 34 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.34 17.48 6.72 -89.70 -0.60 16.88 16 36 H 0.32 13.66 6.86 -89.68 -0.61 13.04 16 37 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -57.65 287.64 3.19 -54.46 By element: Atomic # 1 Polarization: 43.22 SS G_CDS: -0.14 Total: 43.08 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: 4.68 Total: -22.11 kcal Atomic # 7 Polarization: -115.06 SS G_CDS: -3.38 Total: -118.44 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -57.65 3.19 -54.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260661665.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.863 kcal (2) G-P(sol) polarization free energy of solvation -57.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds