Wall clock time and date at job start Mon Mar 30 2020 03:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47126 * 2 1 4 4 C 1.53005 * 109.46701 * 119.99700 * 2 1 3 5 5 H 1.08999 * 109.47097 * 297.61929 * 4 2 1 6 6 C 1.50700 * 109.46567 * 177.62157 * 4 2 1 7 7 C 1.35316 * 126.13355 * 324.68517 * 6 4 2 8 8 C 1.39867 * 107.92576 * 179.90328 * 7 6 4 9 9 N 1.30840 * 108.19794 * 0.37105 * 8 7 6 10 10 N 1.34951 * 126.12336 * 145.00320 * 6 4 2 11 11 C 1.46499 * 126.03925 * 359.97438 * 10 6 4 12 12 C 1.52996 * 109.47314 * 57.62477 * 4 2 1 13 13 H 1.09008 * 109.47116 * 304.39716 * 12 4 2 14 14 N 1.46900 * 109.47186 * 64.39833 * 12 4 2 15 15 C 1.50702 * 109.47102 * 184.40286 * 12 4 2 16 16 H 1.08001 * 119.99858 * 270.56813 * 15 12 4 17 17 C 1.37875 * 119.99995 * 90.57011 * 15 12 4 18 18 N 1.31515 * 120.00082 * 359.96607 * 17 15 12 19 19 Si 1.86808 * 119.99557 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.46609 * 179.97438 * 19 17 15 21 21 H 1.48491 * 109.46980 * 299.99633 * 19 17 15 22 22 H 1.48501 * 109.47119 * 60.00078 * 19 17 15 23 23 H 1.08998 * 109.47106 * 301.48947 * 1 2 3 24 24 H 1.09002 * 109.46680 * 61.48884 * 1 2 3 25 25 H 1.09001 * 109.46983 * 181.49038 * 1 2 3 26 26 H 1.08992 * 109.47016 * 239.99491 * 2 1 3 27 27 H 1.08994 * 109.47271 * 59.99415 * 3 2 1 28 28 H 1.09000 * 109.47169 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46910 * 300.00016 * 3 2 1 30 30 H 1.08003 * 126.03201 * 0.03845 * 7 6 4 31 31 H 1.07998 * 125.89909 * 180.14025 * 8 7 6 32 32 H 1.09002 * 109.47130 * 90.00454 * 11 10 6 33 33 H 1.08999 * 109.47251 * 209.99984 * 11 10 6 34 34 H 1.09000 * 109.47354 * 330.00133 * 11 10 6 35 35 H 1.00901 * 110.99750 * 67.44130 * 14 12 4 36 36 H 1.00904 * 110.99827 * 191.38810 * 14 12 4 37 37 H 0.96992 * 120.00170 * 355.78762 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.7118 -0.1833 2.1388 6 6 3.5458 -0.7725 1.2202 7 6 4.3181 -0.9155 0.1183 8 6 5.6558 -0.9121 0.5268 9 7 5.6853 -0.7801 1.8282 10 7 4.3655 -0.6899 2.2891 11 6 3.9487 -0.5339 3.6848 12 6 1.4817 -2.1454 1.2797 13 1 0.3937 -2.1105 1.2218 14 7 2.0088 -2.9024 0.1364 15 6 1.8951 -2.8198 2.5624 16 1 2.8249 -3.3672 2.6094 17 6 1.0863 -2.7379 3.6760 18 7 -0.0457 -2.0707 3.6190 19 14 1.5985 -3.5745 5.2658 20 1 0.5645 -3.3377 6.3051 21 1 1.7419 -5.0340 5.0331 22 1 2.8963 -3.0161 5.7232 23 1 -0.3633 0.5368 0.8763 24 1 -0.3633 0.4906 -0.9031 25 1 -0.3633 -1.0273 0.0267 26 1 1.8933 -0.5139 -0.8899 27 1 1.6766 1.9563 0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 3.9641 -1.0127 -0.8974 31 1 6.5156 -1.0063 -0.1198 32 1 3.8123 -1.5171 4.1353 33 1 4.7146 0.0140 4.2337 34 1 3.0092 0.0173 3.7241 35 1 3.0021 -3.0532 0.2297 36 1 1.5191 -3.7776 0.0256 37 1 -0.2826 -1.5855 2.8133 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260661669.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:28 Heat of formation + Delta-G solvation = 56.646865 kcal Electronic energy + Delta-G solvation = -18288.360192 eV Core-core repulsion = 15680.625467 eV Total energy + Delta-G solvation = -2607.734725 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.64268 -37.01922 -33.70888 -32.45597 -31.55650 -29.62622 -26.93608 -26.24338 -25.97497 -24.60703 -21.36799 -20.66524 -19.75399 -18.02171 -16.94473 -16.29162 -15.29252 -14.34024 -13.99642 -13.83462 -13.77564 -13.62759 -12.97104 -12.90012 -12.57817 -12.22160 -11.97466 -11.72500 -11.66033 -11.20724 -11.08829 -10.87303 -10.60594 -10.46429 -10.25393 -9.91782 -9.82822 -9.79310 -9.12204 -8.65281 -8.38296 -7.72084 -7.37079 -6.46215 -4.25949 2.71453 3.26214 3.29546 3.33354 3.49008 3.57865 4.35946 5.16199 5.26828 5.35166 5.53426 5.60181 5.75124 5.84941 5.89976 5.93416 6.11587 6.21862 6.25584 6.31887 6.33909 6.44907 6.53790 6.58577 6.62224 6.78472 6.87137 6.96197 7.16456 7.28366 7.39647 7.82708 7.90190 8.13215 8.45756 8.50651 8.60367 8.69689 9.47260 10.85428 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.020006 B = 0.012449 C = 0.009441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.252805 B = 2248.635048 C = 2964.943124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C -0.148 4.148 4 C -0.010 4.010 5 H 0.067 0.933 6 C 0.154 3.846 7 C -0.292 4.292 8 C 0.032 3.968 9 N -0.326 5.326 10 N -0.360 5.360 11 C 0.110 3.890 12 C 0.203 3.797 13 H 0.056 0.944 14 N -0.847 5.847 15 C -0.623 4.623 16 H 0.044 0.956 17 C 0.030 3.970 18 N -0.905 5.905 19 Si 1.052 2.948 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.287 1.287 23 H 0.047 0.953 24 H 0.043 0.957 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.044 0.956 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.139 0.861 31 H 0.169 0.831 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.327 0.673 36 H 0.323 0.677 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.871 4.013 -4.504 7.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 C -0.206 4.206 4 C -0.032 4.032 5 H 0.085 0.915 6 C 0.025 3.975 7 C -0.321 4.321 8 C -0.152 4.152 9 N -0.148 5.148 10 N -0.140 5.140 11 C -0.032 4.032 12 C 0.092 3.908 13 H 0.074 0.926 14 N -0.373 5.373 15 C -0.662 4.662 16 H 0.063 0.937 17 C -0.177 4.177 18 N -0.541 5.541 19 Si 0.880 3.120 20 H -0.206 1.206 21 H -0.215 1.215 22 H -0.213 1.213 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.157 0.843 31 H 0.187 0.813 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.138 0.862 36 H 0.133 0.867 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.843 4.442 -2.185 6.267 hybrid contribution 0.367 -0.578 -1.340 1.505 sum 4.210 3.864 -3.525 6.715 Atomic orbital electron populations 1.21826 0.95660 1.02144 1.00276 1.21024 0.95176 0.94447 0.99128 1.21923 1.01117 0.97066 1.00476 1.20262 0.86297 0.99780 0.96842 0.91522 1.21023 0.94108 0.95870 0.86520 1.21019 0.91745 1.20209 0.99175 1.23595 0.97775 1.01321 0.92558 1.77182 0.98503 1.26723 1.12393 1.48304 1.03408 1.55617 1.06690 1.21758 0.99969 1.03536 0.77905 1.19206 0.95640 0.88007 0.87954 0.92603 1.59285 1.08129 1.24165 1.45689 1.22640 1.08823 1.36572 0.98165 0.93746 1.25652 0.93632 0.96435 1.01931 1.70823 1.21686 1.30014 1.31596 0.83804 0.75718 0.76324 0.76119 1.20588 1.21486 1.21319 0.93377 0.93796 0.91861 0.90075 0.93684 0.92773 0.93551 0.84288 0.81345 0.90174 0.91127 0.89852 0.86166 0.86688 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 8.83 37.16 0.33 -2.08 16 2 C -0.08 -1.38 2.03 -90.62 -0.18 -1.57 16 3 C -0.15 -2.36 8.96 37.16 0.33 -2.03 16 4 C -0.01 -0.21 1.47 -91.77 -0.14 -0.35 16 5 H 0.07 1.49 6.95 -51.93 -0.36 1.13 16 6 C 0.15 3.08 3.78 -82.26 -0.31 2.77 16 7 C -0.29 -5.41 7.85 -40.01 -0.31 -5.72 16 8 C 0.03 0.58 12.03 -17.36 -0.21 0.37 16 9 N -0.33 -6.59 12.58 30.62 0.39 -6.21 16 10 N -0.36 -7.40 4.01 -63.88 -0.26 -7.65 16 11 C 0.11 2.10 10.65 59.85 0.64 2.74 16 12 C 0.20 4.51 2.01 -68.87 -0.14 4.37 16 13 H 0.06 1.36 4.52 -51.92 -0.23 1.12 16 14 N -0.85 -17.03 8.37 -5.65 -0.05 -17.07 16 15 C -0.62 -15.52 6.95 -34.44 -0.24 -15.76 16 16 H 0.04 1.19 7.81 -52.49 -0.41 0.78 16 17 C 0.03 0.76 5.46 -17.82 -0.10 0.67 16 18 N -0.91 -24.59 13.61 55.43 0.75 -23.83 16 19 Si 1.05 23.55 29.56 -169.99 -5.02 18.53 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.07 6.99 56.52 0.39 -5.68 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 1.16 6.20 -51.93 -0.32 0.84 16 26 H 0.08 1.46 6.82 -51.93 -0.35 1.11 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.89 6.73 -51.93 -0.35 0.55 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.14 2.42 7.31 -52.48 -0.38 2.03 16 31 H 0.17 2.37 8.06 -52.49 -0.42 1.95 16 32 H 0.08 1.65 7.30 -51.93 -0.38 1.27 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.08 1.57 6.98 -51.93 -0.36 1.21 16 35 H 0.33 6.78 7.12 -39.29 -0.28 6.50 16 36 H 0.32 6.36 9.08 -39.29 -0.36 6.00 16 37 H 0.27 7.30 6.62 -40.82 -0.27 7.03 16 LS Contribution 291.53 15.07 4.39 4.39 Total: -1.00 -27.16 291.53 -5.53 -32.69 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -5.40 Total: 15.75 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -0.33 Total: -16.59 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.84 Total: -54.77 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -5.02 Total: 18.53 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.16 -5.53 -32.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260661669.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.333 kcal (2) G-P(sol) polarization free energy of solvation -27.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds