Wall clock time and date at job start Mon Mar 30 2020 03:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47126 * 2 1 4 4 C 1.53005 * 109.46701 * 119.99700 * 2 1 3 5 5 H 1.08999 * 109.47097 * 297.61929 * 4 2 1 6 6 C 1.50700 * 109.46567 * 177.62157 * 4 2 1 7 7 C 1.35316 * 126.13355 * 324.68517 * 6 4 2 8 8 C 1.39867 * 107.92576 * 179.90328 * 7 6 4 9 9 N 1.30840 * 108.19794 * 0.37105 * 8 7 6 10 10 N 1.34951 * 126.12336 * 145.00320 * 6 4 2 11 11 C 1.46499 * 126.03925 * 359.97438 * 10 6 4 12 12 C 1.52996 * 109.47314 * 57.62477 * 4 2 1 13 13 H 1.09008 * 109.47116 * 304.39716 * 12 4 2 14 14 N 1.46900 * 109.47186 * 64.39833 * 12 4 2 15 15 C 1.50702 * 109.47102 * 184.40286 * 12 4 2 16 16 H 1.08001 * 119.99858 * 270.56813 * 15 12 4 17 17 C 1.37875 * 119.99995 * 90.57011 * 15 12 4 18 18 N 1.31515 * 120.00082 * 359.96607 * 17 15 12 19 19 Si 1.86808 * 119.99557 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.46609 * 179.97438 * 19 17 15 21 21 H 1.48491 * 109.46980 * 299.99633 * 19 17 15 22 22 H 1.48501 * 109.47119 * 60.00078 * 19 17 15 23 23 H 1.08998 * 109.47106 * 301.48947 * 1 2 3 24 24 H 1.09002 * 109.46680 * 61.48884 * 1 2 3 25 25 H 1.09001 * 109.46983 * 181.49038 * 1 2 3 26 26 H 1.08992 * 109.47016 * 239.99491 * 2 1 3 27 27 H 1.08994 * 109.47271 * 59.99415 * 3 2 1 28 28 H 1.09000 * 109.47169 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46910 * 300.00016 * 3 2 1 30 30 H 1.08003 * 126.03201 * 0.03845 * 7 6 4 31 31 H 1.07998 * 125.89909 * 180.14025 * 8 7 6 32 32 H 1.09002 * 109.47130 * 90.00454 * 11 10 6 33 33 H 1.08999 * 109.47251 * 209.99984 * 11 10 6 34 34 H 1.09000 * 109.47354 * 330.00133 * 11 10 6 35 35 H 1.00901 * 110.99750 * 67.44130 * 14 12 4 36 36 H 1.00904 * 110.99827 * 191.38810 * 14 12 4 37 37 H 0.96992 * 120.00170 * 355.78762 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.7118 -0.1833 2.1388 6 6 3.5458 -0.7725 1.2202 7 6 4.3181 -0.9155 0.1183 8 6 5.6558 -0.9121 0.5268 9 7 5.6853 -0.7801 1.8282 10 7 4.3655 -0.6899 2.2891 11 6 3.9487 -0.5339 3.6848 12 6 1.4817 -2.1454 1.2797 13 1 0.3937 -2.1105 1.2218 14 7 2.0088 -2.9024 0.1364 15 6 1.8951 -2.8198 2.5624 16 1 2.8249 -3.3672 2.6094 17 6 1.0863 -2.7379 3.6760 18 7 -0.0457 -2.0707 3.6190 19 14 1.5985 -3.5745 5.2658 20 1 0.5645 -3.3377 6.3051 21 1 1.7419 -5.0340 5.0331 22 1 2.8963 -3.0161 5.7232 23 1 -0.3633 0.5368 0.8763 24 1 -0.3633 0.4906 -0.9031 25 1 -0.3633 -1.0273 0.0267 26 1 1.8933 -0.5139 -0.8899 27 1 1.6766 1.9563 0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 3.9641 -1.0127 -0.8974 31 1 6.5156 -1.0063 -0.1198 32 1 3.8123 -1.5171 4.1353 33 1 4.7146 0.0140 4.2337 34 1 3.0092 0.0173 3.7241 35 1 3.0021 -3.0532 0.2297 36 1 1.5191 -3.7776 0.0256 37 1 -0.2826 -1.5855 2.8133 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260661669.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:28 Heat of formation + Delta-G solvation = 39.268383 kcal Electronic energy + Delta-G solvation = -18289.113780 eV Core-core repulsion = 15680.625467 eV Total energy + Delta-G solvation = -2608.488313 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.15364 -38.62409 -35.42827 -33.96471 -33.36590 -31.15391 -28.45663 -27.72457 -27.49400 -26.47668 -23.09684 -22.15085 -21.21643 -19.59660 -18.83541 -17.85464 -16.91607 -15.95883 -15.75149 -15.37422 -15.33918 -15.18355 -14.56202 -14.34794 -14.21715 -13.83621 -13.52694 -13.14358 -13.08007 -12.76893 -12.69883 -12.54811 -12.21433 -12.04255 -11.95539 -11.49798 -11.38715 -11.30611 -10.95732 -10.54730 -9.99170 -9.33008 -9.07653 -8.47407 -6.30104 1.19058 1.46691 1.49137 1.69665 1.82556 2.13141 2.49901 3.19229 3.82386 3.83910 4.05689 4.19394 4.22792 4.36612 4.42266 4.48165 4.68425 4.69373 4.82280 4.88144 4.97582 4.99654 5.05413 5.14228 5.18301 5.25008 5.30381 5.47370 5.59090 5.74066 5.98838 5.99719 6.11374 6.29475 6.64710 6.65069 6.90945 7.00560 7.48376 8.81365 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.020006 B = 0.012449 C = 0.009441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.252805 B = 2248.635048 C = 2964.943124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.073 4.073 3 C -0.140 4.140 4 C 0.001 3.999 5 H 0.038 0.962 6 C 0.137 3.863 7 C -0.287 4.287 8 C 0.040 3.960 9 N -0.348 5.348 10 N -0.375 5.375 11 C 0.112 3.888 12 C 0.206 3.794 13 H 0.036 0.964 14 N -0.831 5.831 15 C -0.615 4.615 16 H 0.025 0.975 17 C -0.006 4.006 18 N -0.930 5.930 19 Si 1.083 2.917 20 H -0.284 1.284 21 H -0.284 1.284 22 H -0.270 1.270 23 H 0.038 0.962 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.083 0.917 27 H 0.039 0.961 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.153 0.847 31 H 0.209 0.791 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.326 0.674 36 H 0.326 0.674 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.003 4.423 -5.659 8.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.092 4.092 3 C -0.198 4.198 4 C -0.021 4.021 5 H 0.057 0.943 6 C 0.008 3.992 7 C -0.316 4.316 8 C -0.145 4.145 9 N -0.170 5.170 10 N -0.156 5.156 11 C -0.030 4.030 12 C 0.095 3.905 13 H 0.054 0.946 14 N -0.357 5.357 15 C -0.655 4.655 16 H 0.044 0.956 17 C -0.208 4.208 18 N -0.567 5.567 19 Si 0.908 3.092 20 H -0.210 1.210 21 H -0.210 1.210 22 H -0.195 1.195 23 H 0.057 0.943 24 H 0.090 0.910 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.171 0.829 31 H 0.226 0.774 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.984 4.850 -3.354 7.721 hybrid contribution 0.049 -0.731 -1.055 1.285 sum 5.033 4.118 -4.409 7.857 Atomic orbital electron populations 1.21778 0.95327 1.01121 1.01241 1.20976 0.95379 0.95362 0.97475 1.21833 1.00634 0.95805 1.01487 1.19997 0.86805 0.98172 0.97101 0.94313 1.21107 0.93901 0.96931 0.87243 1.21219 0.91936 1.19185 0.99262 1.24249 0.98801 0.99291 0.92134 1.77165 0.98399 1.27691 1.13712 1.48455 1.03757 1.56400 1.07010 1.21718 1.00652 1.02606 0.78015 1.19069 0.94581 0.89448 0.87427 0.94646 1.59232 1.07918 1.24204 1.44306 1.22736 1.07546 1.35876 0.99310 0.95645 1.26540 0.93372 0.96578 1.04288 1.70906 1.22821 1.31510 1.31505 0.83378 0.76109 0.75934 0.73767 1.20996 1.21011 1.19504 0.94263 0.91028 0.93778 0.89920 0.94178 0.93352 0.91028 0.82927 0.77435 0.92141 0.88648 0.90475 0.86230 0.86370 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.55 8.83 71.98 0.64 -3.92 16 2 C -0.07 -2.47 2.03 -10.79 -0.02 -2.49 16 3 C -0.14 -4.17 8.96 71.98 0.64 -3.53 16 4 C 0.00 0.03 1.47 -11.54 -0.02 0.01 16 5 H 0.04 1.77 6.95 -2.39 -0.02 1.76 16 6 C 0.14 5.35 3.78 41.40 0.16 5.50 16 7 C -0.29 -9.95 7.85 21.99 0.17 -9.78 16 8 C 0.04 1.31 12.03 85.23 1.03 2.33 16 9 N -0.35 -13.43 12.58 -57.02 -0.72 -14.15 16 10 N -0.38 -15.14 4.01 -356.03 -1.43 -16.57 16 11 C 0.11 4.26 10.65 127.77 1.36 5.62 16 12 C 0.21 9.22 2.01 44.17 0.09 9.31 16 13 H 0.04 1.76 4.52 -2.38 -0.01 1.75 16 14 N -0.83 -32.79 8.37 -171.80 -1.44 -34.23 16 15 C -0.62 -30.97 6.95 25.60 0.18 -30.79 16 16 H 0.03 1.36 7.81 -2.91 -0.02 1.34 16 17 C -0.01 -0.33 5.46 84.65 0.46 0.14 16 18 N -0.93 -51.52 13.61 21.45 0.29 -51.23 16 19 Si 1.08 47.68 29.56 68.60 2.03 49.71 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.27 -11.03 6.99 99.48 0.69 -10.33 16 23 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.04 1.62 6.20 -2.39 -0.01 1.60 16 26 H 0.08 2.79 6.82 -2.39 -0.02 2.78 16 27 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.05 1.49 6.73 -2.39 -0.02 1.47 16 29 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.15 4.84 7.31 -2.91 -0.02 4.82 16 31 H 0.21 4.96 8.06 -2.91 -0.02 4.94 16 32 H 0.06 2.51 7.30 -2.39 -0.02 2.49 16 33 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 34 H 0.08 2.98 6.98 -2.39 -0.02 2.96 16 35 H 0.33 13.15 7.12 -89.69 -0.64 12.51 16 36 H 0.33 12.62 9.08 -89.69 -0.81 11.80 16 37 H 0.26 14.64 6.62 -92.71 -0.61 14.03 16 Total: -1.00 -57.55 291.53 3.19 -54.36 By element: Atomic # 1 Polarization: 39.91 SS G_CDS: -0.23 Total: 39.68 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: 4.68 Total: -27.59 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -3.29 Total: -116.17 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Total: -57.55 3.19 -54.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260661669.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.632 kcal (2) G-P(sol) polarization free energy of solvation -57.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds