Wall clock time and date at job start Mon Mar 30 2020 03:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40060 * 126.04357 * 2 1 4 4 C 1.30842 * 108.39157 * 179.97438 * 3 2 1 5 5 C 1.50695 * 125.84000 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47609 * 245.98183 * 5 4 3 7 7 C 1.52999 * 109.47074 * 5.98396 * 5 4 3 8 8 C 1.53004 * 109.46964 * 125.98042 * 5 4 3 9 9 C 1.39780 * 108.31987 * 0.02562 * 4 3 2 10 10 C 1.50700 * 126.09160 * 179.97438 * 9 4 3 11 11 C 1.50696 * 109.46948 * 95.76059 * 10 9 4 12 12 H 1.08000 * 120.00062 * 359.73267 * 11 10 9 13 13 C 1.37882 * 119.99716 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00175 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99754 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47198 * 60.00588 * 15 13 11 17 17 H 1.48500 * 109.46779 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47063 * 300.00389 * 15 13 11 19 19 C 1.35254 * 126.04172 * 180.27007 * 2 1 3 20 20 N 1.39210 * 126.22240 * 0.02562 * 19 2 1 21 21 H 1.09000 * 109.46760 * 90.02286 * 1 2 3 22 22 H 1.08999 * 109.47158 * 210.02104 * 1 2 3 23 23 H 1.08992 * 109.47001 * 330.02873 * 1 2 3 24 24 H 1.09003 * 109.47337 * 64.88925 * 6 5 4 25 25 H 1.09002 * 109.47487 * 184.89265 * 6 5 4 26 26 H 1.09004 * 109.47306 * 304.89128 * 6 5 4 27 27 H 1.09002 * 109.46844 * 60.00022 * 7 5 4 28 28 H 1.09004 * 109.46994 * 179.97438 * 7 5 4 29 29 H 1.08995 * 109.47340 * 299.99699 * 7 5 4 30 30 H 1.09007 * 109.46981 * 60.00239 * 8 5 4 31 31 H 1.09002 * 109.46940 * 180.02562 * 8 5 4 32 32 H 1.08996 * 109.47232 * 300.00419 * 8 5 4 33 33 H 1.09004 * 109.46853 * 335.76758 * 10 9 4 34 34 H 1.08997 * 109.47329 * 215.76816 * 10 9 4 35 35 H 0.97001 * 120.00065 * 179.97438 * 14 13 11 36 36 H 0.97000 * 119.99893 * 180.15987 * 20 19 2 37 37 H 0.97001 * 119.99936 * 0.16065 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1325 0.0000 4 6 3.5359 0.7357 0.0006 5 6 4.7472 1.6323 0.0013 6 6 5.5071 1.4641 -1.3159 7 6 4.3035 3.0888 0.1517 8 6 5.6607 1.2543 1.1690 9 6 3.5522 -0.6620 0.0003 10 6 4.7803 -1.5355 0.0003 11 6 5.1068 -1.9430 1.4138 12 1 4.4897 -1.6000 2.2310 13 6 6.1965 -2.7498 1.6644 14 7 6.9512 -3.1633 0.6698 15 14 6.6010 -3.2557 3.4166 16 1 5.4574 -4.0090 3.9908 17 1 7.8111 -4.1163 3.4165 18 1 6.8562 -2.0433 4.2353 19 6 2.2608 -1.0936 -0.0052 20 7 1.8367 -2.4196 -0.0119 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3633 -0.8898 0.5142 23 1 -0.3633 0.8902 0.5133 24 1 4.8869 1.8152 -2.1406 25 1 6.4283 2.0457 -1.2808 26 1 5.7476 0.4114 -1.4648 27 1 3.7622 3.2086 1.0902 28 1 5.1797 3.7372 0.1527 29 1 3.6527 3.3581 -0.6801 30 1 5.9768 0.2165 1.0619 31 1 6.5366 1.9031 1.1698 32 1 5.1194 1.3741 2.1074 33 1 5.6195 -0.9823 -0.4214 34 1 4.5931 -2.4254 -0.6005 35 1 7.7180 -3.7306 0.8461 36 1 2.4891 -3.1374 -0.0129 37 1 0.8889 -2.6256 -0.0156 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260806200.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:32 Heat of formation + Delta-G solvation = 59.870085 kcal Electronic energy + Delta-G solvation = -17730.060130 eV Core-core repulsion = 15122.465174 eV Total energy + Delta-G solvation = -2607.594956 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.53122 -36.39945 -33.86600 -32.94712 -31.90180 -29.49235 -26.76788 -26.46289 -26.26200 -25.36857 -22.59927 -20.96035 -19.08144 -18.09686 -16.30048 -16.11447 -15.44317 -14.89320 -14.54170 -14.24575 -13.72022 -13.44426 -12.96743 -12.57280 -12.48004 -12.08502 -11.63376 -11.54285 -11.38491 -11.30288 -10.87565 -10.72356 -10.69160 -10.42145 -10.33252 -10.21285 -9.96638 -9.52718 -9.19979 -9.13717 -8.26973 -7.86062 -6.60217 -5.87733 -3.91319 2.87793 3.09881 3.36750 3.41628 3.44790 3.89950 4.44916 4.54917 4.98708 5.36014 5.40962 5.41986 5.57195 5.59206 5.70680 5.99568 6.15529 6.31293 6.36716 6.41803 6.51553 6.55111 6.73317 6.74545 6.82148 7.04720 7.07669 7.25961 7.47321 7.68036 7.84649 7.98123 8.08636 8.18725 8.32959 8.57997 8.80984 9.14422 9.70748 11.17814 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.020224 B = 0.009991 C = 0.007732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.155313 B = 2801.739508 C = 3620.296975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.417 5.417 3 N -0.331 5.331 4 C 0.117 3.883 5 C 0.021 3.979 6 C -0.139 4.139 7 C -0.131 4.131 8 C -0.150 4.150 9 C -0.252 4.252 10 C 0.096 3.904 11 C -0.495 4.495 12 H 0.051 0.949 13 C 0.057 3.943 14 N -0.896 5.896 15 Si 0.883 3.117 16 H -0.280 1.280 17 H -0.289 1.289 18 H -0.277 1.277 19 C 0.341 3.659 20 N -0.857 5.857 21 H 0.059 0.941 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.107 0.893 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.033 0.967 34 H 0.011 0.989 35 H 0.259 0.741 36 H 0.420 0.580 37 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.529 5.440 -2.340 10.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.207 5.207 3 N -0.153 5.153 4 C -0.049 4.049 5 C 0.018 3.982 6 C -0.197 4.197 7 C -0.189 4.189 8 C -0.208 4.208 9 C -0.267 4.267 10 C 0.058 3.942 11 C -0.533 4.533 12 H 0.069 0.931 13 C -0.144 4.144 14 N -0.536 5.536 15 Si 0.712 3.288 16 H -0.206 1.206 17 H -0.215 1.215 18 H -0.203 1.203 19 C 0.117 3.883 20 N -0.407 5.407 21 H 0.077 0.923 22 H 0.089 0.911 23 H 0.099 0.901 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.125 0.875 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.029 0.971 35 H 0.069 0.931 36 H 0.252 0.748 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -9.283 6.409 -2.373 11.527 hybrid contribution 0.325 -1.493 1.115 1.891 sum -8.958 4.916 -1.258 10.296 Atomic orbital electron populations 1.21452 0.76459 1.03098 1.01777 1.47974 1.04974 1.03083 1.64623 1.77184 1.01119 1.05234 1.31811 1.21717 0.92223 0.93434 0.97490 1.18841 0.90358 0.92093 0.96864 1.21916 0.98880 1.03454 0.95448 1.21767 1.00162 0.95196 1.01736 1.22115 0.97267 1.05465 0.95912 1.19848 0.93642 0.93434 1.19808 1.17576 0.88424 0.92018 0.96196 1.21163 1.10500 1.28716 0.92969 0.93109 1.24983 0.96526 0.96514 0.96334 1.69939 1.17278 1.35893 1.30517 0.86795 0.77531 0.78550 0.85937 1.20623 1.21507 1.20312 1.17720 0.90068 0.81179 0.99288 1.41446 1.09252 1.02655 1.87384 0.92282 0.91142 0.90119 0.93570 0.92727 0.90729 0.92940 0.93220 0.92937 0.87483 0.93769 0.93623 0.94899 0.97086 0.93111 0.74762 0.78839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.47 11.28 59.85 0.67 2.15 16 2 N -0.42 -7.74 4.02 -67.24 -0.27 -8.01 16 3 N -0.33 -6.83 11.86 33.65 0.40 -6.43 16 4 C 0.12 2.49 5.61 -82.44 -0.46 2.02 16 5 C 0.02 0.39 0.75 -155.66 -0.12 0.27 16 6 C -0.14 -2.46 8.36 37.16 0.31 -2.15 16 7 C -0.13 -2.16 7.96 37.16 0.30 -1.86 16 8 C -0.15 -3.00 8.24 37.16 0.31 -2.69 16 9 C -0.25 -5.69 5.11 -104.79 -0.54 -6.23 16 10 C 0.10 2.40 4.19 -29.04 -0.12 2.28 16 11 C -0.49 -13.31 7.49 -34.44 -0.26 -13.57 16 12 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 13 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -25.69 13.29 55.43 0.74 -24.95 16 15 Si 0.88 21.35 29.54 -169.99 -5.02 16.33 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C 0.34 6.84 7.94 -153.40 -1.22 5.62 16 20 N -0.86 -14.10 9.10 31.11 0.28 -13.82 16 21 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.07 0.74 7.51 -51.93 -0.39 0.35 16 23 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 1.47 5.68 -51.93 -0.29 1.18 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.11 2.50 4.16 -51.92 -0.22 2.28 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.03 0.86 4.59 -51.93 -0.24 0.62 16 34 H 0.01 0.29 7.81 -51.93 -0.41 -0.12 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.42 7.26 8.35 -40.82 -0.34 6.91 16 37 H 0.39 4.86 8.10 -40.82 -0.33 4.53 16 LS Contribution 297.03 15.07 4.48 4.48 Total: -1.00 -30.99 297.03 -6.18 -37.17 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -5.56 Total: 7.94 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -1.22 Total: -12.70 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 1.15 Total: -53.21 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.99 -6.18 -37.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260806200.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.036 kcal (2) G-P(sol) polarization free energy of solvation -30.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds