Wall clock time and date at job start Mon Mar 30 2020 03:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39871 * 126.03733 * 2 1 4 4 N 1.30834 * 108.20279 * 179.97438 * 3 2 1 5 5 N 1.40087 * 108.20480 * 359.97438 * 4 3 2 6 6 C 1.46501 * 126.03810 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47204 * 305.02483 * 6 5 4 8 8 H 1.09008 * 109.47099 * 305.00034 * 7 6 5 9 9 C 1.52995 * 109.47419 * 184.99851 * 7 6 5 10 10 N 1.46903 * 109.47214 * 64.99432 * 7 6 5 11 11 C 1.46904 * 111.00074 * 205.00223 * 10 7 6 12 12 H 1.08997 * 109.46992 * 325.00006 * 11 10 7 13 13 C 1.52994 * 109.46892 * 85.00326 * 11 10 7 14 14 C 1.50695 * 109.46798 * 205.00385 * 11 10 7 15 15 H 1.08004 * 120.00546 * 0.27742 * 14 11 10 16 16 C 1.37885 * 119.99721 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99913 * 179.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 11 19 19 H 1.48493 * 109.47326 * 90.00142 * 18 16 14 20 20 H 1.48506 * 109.46545 * 209.99892 * 18 16 14 21 21 H 1.48498 * 109.47210 * 329.99603 * 18 16 14 22 22 C 1.34945 * 107.92679 * 0.26113 * 5 4 3 23 23 H 1.09000 * 109.46864 * 89.98097 * 1 2 3 24 24 H 1.08999 * 109.47060 * 209.97661 * 1 2 3 25 25 H 1.08991 * 109.47497 * 329.97904 * 1 2 3 26 26 H 1.08003 * 125.89603 * 0.02562 * 3 2 1 27 27 H 1.08996 * 109.47111 * 185.02177 * 6 5 4 28 28 H 1.08999 * 109.47086 * 65.01992 * 6 5 4 29 29 H 1.08995 * 109.47303 * 299.99921 * 9 7 6 30 30 H 1.09005 * 109.46837 * 59.99921 * 9 7 6 31 31 H 1.09005 * 109.47279 * 179.97438 * 9 7 6 32 32 H 1.00902 * 110.99792 * 81.05091 * 10 7 6 33 33 H 1.08998 * 109.46887 * 180.02562 * 13 11 10 34 34 H 1.09005 * 109.47504 * 299.99905 * 13 11 10 35 35 H 1.09002 * 109.47168 * 60.00256 * 13 11 10 36 36 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 37 37 H 1.08002 * 126.13289 * 179.73717 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7303 0.0006 5 7 3.5844 -0.6705 0.0015 6 6 4.7746 -1.5247 0.0029 7 6 5.6725 -1.1503 -1.1780 8 1 5.0984 -1.2063 -2.1030 9 6 6.8519 -2.1222 -1.2502 10 7 6.1757 0.2178 -0.9961 11 6 6.5186 0.8286 -2.2874 12 1 6.9193 0.0660 -2.9551 13 6 5.2635 1.4433 -2.9100 14 6 7.5526 1.9042 -2.0753 15 1 7.9218 2.1101 -1.0815 16 6 8.0320 2.6212 -3.1511 17 7 8.9341 3.5602 -2.9661 18 14 7.3992 2.2598 -4.8711 19 1 6.2135 3.1089 -5.1508 20 1 8.4645 2.5552 -5.8626 21 1 7.0167 0.8282 -4.9671 22 6 2.3032 -1.0941 -0.0043 23 1 -0.3633 0.0003 -1.0277 24 1 -0.3633 -0.8902 0.5135 25 1 -0.3634 0.8897 0.5141 26 1 1.9950 2.1578 0.0004 27 1 4.4729 -2.5683 -0.0865 28 1 5.3222 -1.3834 0.9347 29 1 7.4259 -2.0663 -0.3254 30 1 6.4784 -3.1373 -1.3852 31 1 7.4913 -1.8557 -2.0918 32 1 6.9655 0.2320 -0.3682 33 1 5.5178 1.8962 -3.8683 34 1 4.5155 0.6654 -3.0633 35 1 4.8629 2.2061 -2.2422 36 1 9.2710 4.0649 -3.7228 37 1 1.9724 -2.1223 -0.0092 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308816759.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:16 Heat of formation + Delta-G solvation = 81.145634 kcal Electronic energy + Delta-G solvation = -17283.648784 eV Core-core repulsion = 14676.976405 eV Total energy + Delta-G solvation = -2606.672379 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.76852 -37.16826 -33.96782 -32.33088 -31.34836 -30.61027 -27.61304 -27.20518 -25.05340 -24.82506 -21.53356 -20.31280 -19.73010 -19.68930 -16.84864 -16.42710 -15.41709 -14.99606 -14.28133 -14.10848 -13.57677 -13.29000 -13.11354 -12.92583 -12.71207 -12.56558 -12.45639 -12.04686 -11.98609 -11.75854 -11.51496 -11.15278 -10.81986 -10.63844 -10.43439 -10.03797 -9.90691 -9.42705 -9.00840 -8.92943 -8.56226 -7.95376 -7.30763 -6.05393 -4.03826 2.32860 2.94945 3.22195 3.30176 3.38278 3.40764 4.42246 4.67738 4.89859 5.04459 5.25400 5.27862 5.35906 5.43987 5.49476 5.56018 5.68743 5.74325 5.80578 5.98746 6.08825 6.16091 6.24660 6.34333 6.42847 6.51229 6.66237 6.83937 6.91604 7.08162 7.42918 7.50573 7.65438 8.01300 8.24175 8.43442 8.68236 9.00725 9.57653 11.07839 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.027834 B = 0.007127 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.708831 B = 3927.581858 C = 4420.309660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.250 4.250 3 C 0.017 3.983 4 N -0.218 5.218 5 N -0.357 5.357 6 C 0.145 3.855 7 C 0.069 3.931 8 H 0.074 0.926 9 C -0.179 4.179 10 N -0.651 5.651 11 C 0.188 3.812 12 H -0.005 1.005 13 C -0.127 4.127 14 C -0.513 4.513 15 H 0.078 0.922 16 C 0.071 3.929 17 N -0.900 5.900 18 Si 0.891 3.109 19 H -0.279 1.279 20 H -0.299 1.299 21 H -0.271 1.271 22 C 0.031 3.969 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.173 0.827 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.337 0.663 33 H 0.030 0.970 34 H 0.017 0.983 35 H 0.061 0.939 36 H 0.263 0.737 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.803 -12.096 4.914 18.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.262 4.262 3 C -0.170 4.170 4 N -0.038 5.038 5 N -0.139 5.139 6 C 0.023 3.977 7 C -0.043 4.043 8 H 0.092 0.908 9 C -0.239 4.239 10 N -0.282 5.282 11 C 0.079 3.921 12 H 0.013 0.987 13 C -0.185 4.185 14 C -0.551 4.551 15 H 0.096 0.904 16 C -0.131 4.131 17 N -0.539 5.539 18 Si 0.722 3.278 19 H -0.206 1.206 20 H -0.227 1.227 21 H -0.196 1.196 22 C -0.115 4.115 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.190 0.810 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.156 0.844 33 H 0.049 0.951 34 H 0.036 0.964 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -11.940 -11.402 4.858 17.210 hybrid contribution -0.348 -0.850 -1.329 1.616 sum -12.288 -12.252 3.529 17.708 Atomic orbital electron populations 1.19976 0.90161 1.01434 1.00950 1.20042 0.96515 0.92251 1.17353 1.23893 0.90792 0.99441 1.02885 1.77975 1.19022 0.87811 1.18952 1.48557 1.04512 1.05265 1.55540 1.21809 0.84082 0.90987 1.00832 1.21815 0.94917 0.90938 0.96678 0.90813 1.22474 0.99370 0.99136 1.02887 1.60527 1.39439 1.13680 1.14520 1.19454 0.92583 0.93694 0.86326 0.98720 1.21978 0.98073 0.99669 0.98739 1.21094 1.20547 1.17472 0.95998 0.90396 1.24917 0.94685 0.94683 0.98802 1.69895 1.29942 1.22758 1.31258 0.86807 0.77366 0.79020 0.84595 1.20612 1.22692 1.19644 1.22195 0.84914 0.99418 1.04979 0.92701 0.92814 0.92284 0.80971 0.89499 0.90008 0.92241 0.92973 0.91571 0.84408 0.95124 0.96399 0.92039 0.92690 0.82117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.37 36.01 0.37 -0.31 16 2 C -0.25 -3.42 6.10 -105.05 -0.64 -4.06 16 3 C 0.02 0.27 11.96 -17.37 -0.21 0.07 16 4 N -0.22 -4.04 11.44 30.62 0.35 -3.69 16 5 N -0.36 -5.55 3.68 -61.37 -0.23 -5.78 16 6 C 0.15 1.93 6.18 -4.04 -0.02 1.91 16 7 C 0.07 1.11 2.61 -67.72 -0.18 0.93 16 8 H 0.07 1.31 7.11 -51.92 -0.37 0.94 16 9 C -0.18 -2.46 9.15 37.15 0.34 -2.12 16 10 N -0.65 -13.27 4.96 -100.96 -0.50 -13.77 16 11 C 0.19 4.54 2.00 -68.87 -0.14 4.40 16 12 H 0.00 -0.12 6.17 -51.93 -0.32 -0.44 16 13 C -0.13 -3.03 8.88 37.15 0.33 -2.70 16 14 C -0.51 -14.58 9.17 -34.44 -0.32 -14.90 16 15 H 0.08 2.39 7.86 -52.48 -0.41 1.98 16 16 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 17 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 18 Si 0.89 22.77 24.37 -169.99 -4.14 18.63 16 19 H -0.28 -7.05 6.87 56.52 0.39 -6.67 16 20 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 21 H -0.27 -6.69 6.53 56.52 0.37 -6.32 16 22 C 0.03 0.41 11.36 -17.22 -0.20 0.21 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.17 2.39 8.06 -52.48 -0.42 1.97 16 27 H 0.09 0.84 8.07 -51.93 -0.42 0.42 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.05 7.43 -51.93 -0.39 0.67 16 32 H 0.34 6.92 7.96 -39.29 -0.31 6.61 16 33 H 0.03 0.75 3.27 -51.93 -0.17 0.58 16 34 H 0.02 0.38 7.43 -51.93 -0.39 0.00 16 35 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 37 H 0.16 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 298.86 15.07 4.50 4.50 Total: -1.00 -32.55 298.86 -5.76 -38.30 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.76 Total: 3.53 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -0.75 Total: -14.59 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.40 Total: -50.38 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.14 Total: 18.63 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.55 -5.76 -38.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308816759.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.448 kcal (2) G-P(sol) polarization free energy of solvation -32.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds