Wall clock time and date at job start Mon Mar 30 2020 03:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39871 * 126.03733 * 2 1 4 4 N 1.30834 * 108.20279 * 179.97438 * 3 2 1 5 5 N 1.40087 * 108.20480 * 359.97438 * 4 3 2 6 6 C 1.46501 * 126.03810 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47204 * 305.02483 * 6 5 4 8 8 H 1.09008 * 109.47099 * 305.00034 * 7 6 5 9 9 C 1.52995 * 109.47419 * 184.99851 * 7 6 5 10 10 N 1.46903 * 109.47214 * 64.99432 * 7 6 5 11 11 C 1.46904 * 111.00074 * 205.00223 * 10 7 6 12 12 H 1.08997 * 109.46992 * 325.00006 * 11 10 7 13 13 C 1.52994 * 109.46892 * 85.00326 * 11 10 7 14 14 C 1.50695 * 109.46798 * 205.00385 * 11 10 7 15 15 H 1.08004 * 120.00546 * 0.27742 * 14 11 10 16 16 C 1.37885 * 119.99721 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99913 * 179.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 11 19 19 H 1.48493 * 109.47326 * 90.00142 * 18 16 14 20 20 H 1.48506 * 109.46545 * 209.99892 * 18 16 14 21 21 H 1.48498 * 109.47210 * 329.99603 * 18 16 14 22 22 C 1.34945 * 107.92679 * 0.26113 * 5 4 3 23 23 H 1.09000 * 109.46864 * 89.98097 * 1 2 3 24 24 H 1.08999 * 109.47060 * 209.97661 * 1 2 3 25 25 H 1.08991 * 109.47497 * 329.97904 * 1 2 3 26 26 H 1.08003 * 125.89603 * 0.02562 * 3 2 1 27 27 H 1.08996 * 109.47111 * 185.02177 * 6 5 4 28 28 H 1.08999 * 109.47086 * 65.01992 * 6 5 4 29 29 H 1.08995 * 109.47303 * 299.99921 * 9 7 6 30 30 H 1.09005 * 109.46837 * 59.99921 * 9 7 6 31 31 H 1.09005 * 109.47279 * 179.97438 * 9 7 6 32 32 H 1.00902 * 110.99792 * 81.05091 * 10 7 6 33 33 H 1.08998 * 109.46887 * 180.02562 * 13 11 10 34 34 H 1.09005 * 109.47504 * 299.99905 * 13 11 10 35 35 H 1.09002 * 109.47168 * 60.00256 * 13 11 10 36 36 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 37 37 H 1.08002 * 126.13289 * 179.73717 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7303 0.0006 5 7 3.5844 -0.6705 0.0015 6 6 4.7746 -1.5247 0.0029 7 6 5.6725 -1.1503 -1.1780 8 1 5.0984 -1.2063 -2.1030 9 6 6.8519 -2.1222 -1.2502 10 7 6.1757 0.2178 -0.9961 11 6 6.5186 0.8286 -2.2874 12 1 6.9193 0.0660 -2.9551 13 6 5.2635 1.4433 -2.9100 14 6 7.5526 1.9042 -2.0753 15 1 7.9218 2.1101 -1.0815 16 6 8.0320 2.6212 -3.1511 17 7 8.9341 3.5602 -2.9661 18 14 7.3992 2.2598 -4.8711 19 1 6.2135 3.1089 -5.1508 20 1 8.4645 2.5552 -5.8626 21 1 7.0167 0.8282 -4.9671 22 6 2.3032 -1.0941 -0.0043 23 1 -0.3633 0.0003 -1.0277 24 1 -0.3633 -0.8902 0.5135 25 1 -0.3634 0.8897 0.5141 26 1 1.9950 2.1578 0.0004 27 1 4.4729 -2.5683 -0.0865 28 1 5.3222 -1.3834 0.9347 29 1 7.4259 -2.0663 -0.3254 30 1 6.4784 -3.1373 -1.3852 31 1 7.4913 -1.8557 -2.0918 32 1 6.9655 0.2320 -0.3682 33 1 5.5178 1.8962 -3.8683 34 1 4.5155 0.6654 -3.0633 35 1 4.8629 2.2061 -2.2422 36 1 9.2710 4.0649 -3.7228 37 1 1.9724 -2.1223 -0.0092 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308816759.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:16 Heat of formation + Delta-G solvation = 58.063997 kcal Electronic energy + Delta-G solvation = -17284.649679 eV Core-core repulsion = 14676.976405 eV Total energy + Delta-G solvation = -2607.673274 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.85582 -38.67842 -35.64394 -33.95413 -32.71848 -31.96382 -29.19753 -28.21909 -27.14375 -25.90621 -22.94526 -21.68777 -21.26528 -20.79922 -18.84196 -17.68951 -17.16324 -16.39938 -15.66128 -15.40931 -15.18881 -14.84960 -14.40776 -14.16105 -14.04722 -13.95541 -13.77883 -13.49401 -13.15194 -12.88243 -12.79671 -12.73504 -12.51608 -12.26052 -12.11083 -11.85382 -11.44623 -11.10155 -10.98765 -10.80000 -10.13093 -9.04539 -8.86513 -8.33043 -6.35874 1.26498 1.27473 1.28694 1.39925 1.92713 2.11154 2.27190 3.02071 3.43626 3.73312 4.05153 4.13254 4.24900 4.37765 4.43340 4.52268 4.62196 4.64082 4.66728 4.77958 4.83505 4.86011 5.00633 5.05751 5.06414 5.16835 5.27879 5.33732 5.47380 5.50078 5.63615 5.99182 6.02239 6.44629 6.55285 6.68882 6.89660 7.11904 7.30354 8.83754 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.027834 B = 0.007127 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.708831 B = 3927.581858 C = 4420.309660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.259 4.259 3 C 0.001 3.999 4 N -0.279 5.279 5 N -0.366 5.366 6 C 0.146 3.854 7 C 0.068 3.932 8 H 0.060 0.940 9 C -0.171 4.171 10 N -0.658 5.658 11 C 0.198 3.802 12 H -0.008 1.008 13 C -0.114 4.114 14 C -0.515 4.515 15 H 0.039 0.961 16 C 0.015 3.985 17 N -0.946 5.946 18 Si 0.951 3.049 19 H -0.273 1.273 20 H -0.294 1.294 21 H -0.254 1.254 22 C 0.037 3.963 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.178 0.822 27 H 0.135 0.865 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.039 0.961 32 H 0.332 0.668 33 H 0.024 0.976 34 H 0.035 0.965 35 H 0.043 0.957 36 H 0.266 0.734 37 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.863 -14.935 4.460 21.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.271 4.271 3 C -0.186 4.186 4 N -0.100 5.100 5 N -0.148 5.148 6 C 0.025 3.975 7 C -0.043 4.043 8 H 0.078 0.922 9 C -0.230 4.230 10 N -0.288 5.288 11 C 0.088 3.912 12 H 0.010 0.990 13 C -0.172 4.172 14 C -0.554 4.554 15 H 0.057 0.943 16 C -0.182 4.182 17 N -0.587 5.587 18 Si 0.779 3.221 19 H -0.199 1.199 20 H -0.222 1.222 21 H -0.178 1.178 22 C -0.108 4.108 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.195 0.805 27 H 0.153 0.847 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.058 0.942 32 H 0.150 0.850 33 H 0.043 0.957 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -14.021 -14.262 4.418 20.482 hybrid contribution 0.279 0.011 -1.069 1.105 sum -13.742 -14.252 3.349 20.079 Atomic orbital electron populations 1.20013 0.87847 1.02664 1.01577 1.20464 0.98180 0.91514 1.16963 1.24216 0.90983 1.00695 1.02675 1.77881 1.20589 0.90048 1.21442 1.48724 1.05883 1.04483 1.55758 1.21963 0.83322 0.92970 0.99277 1.21909 0.95907 0.88957 0.97538 0.92215 1.22366 0.98037 1.00418 1.02209 1.60460 1.38871 1.17087 1.12375 1.19202 0.91375 0.92403 0.88205 0.99047 1.21809 0.98097 0.99536 0.97768 1.21375 1.21298 1.18417 0.94294 0.94303 1.25745 0.94898 0.94506 1.03086 1.70036 1.31699 1.24287 1.32643 0.85816 0.76968 0.79793 0.79519 1.19929 1.22189 1.17842 1.22885 0.83782 1.01199 1.02959 0.92274 0.90806 0.91904 0.80516 0.84685 0.89937 0.91423 0.89254 0.94189 0.85020 0.95738 0.94638 0.93788 0.92502 0.77939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.11 10.37 71.24 0.74 -0.37 16 2 C -0.26 -6.53 6.10 -20.14 -0.12 -6.65 16 3 C 0.00 0.02 11.96 85.24 1.02 1.04 16 4 N -0.28 -10.27 11.44 -57.02 -0.65 -10.93 16 5 N -0.37 -10.58 3.68 -348.07 -1.28 -11.86 16 6 C 0.15 3.44 6.18 86.38 0.53 3.97 16 7 C 0.07 2.06 2.61 44.91 0.12 2.18 16 8 H 0.06 1.99 7.11 -2.38 -0.02 1.97 16 9 C -0.17 -4.28 9.15 71.98 0.66 -3.62 16 10 N -0.66 -26.85 4.96 -473.32 -2.35 -29.20 16 11 C 0.20 9.58 2.00 44.16 0.09 9.66 16 12 H -0.01 -0.39 6.17 -2.39 -0.01 -0.40 16 13 C -0.11 -5.40 8.88 71.98 0.64 -4.76 16 14 C -0.52 -30.22 9.17 25.60 0.23 -29.99 16 15 H 0.04 2.52 7.86 -2.91 -0.02 2.49 16 16 C 0.02 0.91 5.45 84.66 0.46 1.37 16 17 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 18 Si 0.95 47.00 24.37 68.60 1.67 48.68 16 19 H -0.27 -13.14 6.87 99.48 0.68 -12.46 16 20 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 21 H -0.25 -11.77 6.53 99.48 0.65 -11.12 16 22 C 0.04 0.86 11.36 83.54 0.95 1.81 16 23 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.18 5.02 8.06 -2.91 -0.02 4.99 16 27 H 0.14 1.89 8.07 -2.39 -0.02 1.87 16 28 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.07 1.58 8.13 -2.39 -0.02 1.56 16 30 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.04 1.21 7.43 -2.38 -0.02 1.19 16 32 H 0.33 13.95 7.96 -89.69 -0.71 13.23 16 33 H 0.02 1.16 3.27 -2.39 -0.01 1.16 16 34 H 0.03 1.51 7.43 -2.38 -0.02 1.50 16 35 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 37 H 0.20 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -73.05 298.86 3.26 -69.79 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.25 Total: 18.99 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 5.32 Total: -25.35 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -3.98 Total: -112.10 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 1.67 Total: 48.68 kcal Total: -73.05 3.26 -69.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308816759.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.855 kcal (2) G-P(sol) polarization free energy of solvation -73.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds