Wall clock time and date at job start Mon Mar 30 2020 03:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39870 * 126.04019 * 2 1 4 4 N 1.30833 * 108.20082 * 179.97438 * 3 2 1 5 5 N 1.40080 * 108.20918 * 0.02562 * 4 3 2 6 6 C 1.46496 * 126.04028 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.46768 * 305.01976 * 6 5 4 8 8 H 1.09002 * 109.47025 * 55.00710 * 7 6 5 9 9 C 1.53002 * 109.46907 * 174.99890 * 7 6 5 10 10 N 1.46896 * 109.47421 * 294.99923 * 7 6 5 11 11 C 1.46900 * 110.99955 * 120.45895 * 10 7 6 12 12 H 1.08993 * 109.47330 * 326.40550 * 11 10 7 13 13 C 1.53008 * 109.46702 * 86.40383 * 11 10 7 14 14 C 1.50700 * 109.47300 * 206.40253 * 11 10 7 15 15 H 1.07999 * 119.99766 * 359.97438 * 14 11 10 16 16 C 1.37874 * 120.00141 * 180.02562 * 14 11 10 17 17 N 1.31511 * 119.99860 * 180.02562 * 16 14 11 18 18 Si 1.86803 * 119.99996 * 359.97438 * 16 14 11 19 19 H 1.48494 * 109.46986 * 90.00243 * 18 16 14 20 20 H 1.48496 * 109.46869 * 210.00548 * 18 16 14 21 21 H 1.48500 * 109.46892 * 330.00013 * 18 16 14 22 22 C 1.34950 * 107.92162 * 359.75435 * 5 4 3 23 23 H 1.08999 * 109.47560 * 90.02727 * 1 2 3 24 24 H 1.09008 * 109.47302 * 210.02698 * 1 2 3 25 25 H 1.08999 * 109.47150 * 330.02240 * 1 2 3 26 26 H 1.08002 * 125.89708 * 359.95773 * 3 2 1 27 27 H 1.08998 * 109.47346 * 65.01642 * 6 5 4 28 28 H 1.08997 * 109.47805 * 185.02437 * 6 5 4 29 29 H 1.09001 * 109.47536 * 295.95940 * 9 7 6 30 30 H 1.08998 * 109.47445 * 55.96126 * 9 7 6 31 31 H 1.08999 * 109.47233 * 175.96107 * 9 7 6 32 32 H 1.00898 * 111.00028 * 244.42264 * 10 7 6 33 33 H 1.09001 * 109.47133 * 178.34684 * 13 11 10 34 34 H 1.08994 * 109.46980 * 298.34896 * 13 11 10 35 35 H 1.09000 * 109.46628 * 58.34988 * 13 11 10 36 36 H 0.97003 * 119.99609 * 179.97438 * 17 16 14 37 37 H 1.08010 * 126.12181 * 180.24111 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5753 0.7302 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7745 -1.5248 0.0013 7 6 5.6726 -1.1495 -1.1792 8 1 5.9019 -0.0847 -1.1370 9 6 6.9720 -1.9541 -1.1074 10 7 4.9785 -1.4515 -2.4381 11 6 4.8161 -0.2404 -3.2534 12 1 4.6731 0.6206 -2.6007 13 6 6.0674 -0.0299 -4.1085 14 6 3.6151 -0.3959 -4.1503 15 1 3.0311 -1.3038 -4.1181 16 6 3.2625 0.6204 -5.0127 17 7 2.2141 0.4849 -5.7950 18 14 4.2731 2.1905 -5.0688 19 1 5.3549 2.0470 -6.0760 20 1 3.3971 3.3299 -5.4421 21 1 4.8707 2.4425 -3.7329 22 6 2.3031 -1.0941 0.0051 23 1 -0.3634 -0.0005 -1.0276 24 1 -0.3634 -0.8898 0.5143 25 1 -0.3633 0.8902 0.5135 26 1 1.9950 2.1578 -0.0006 27 1 5.3219 -1.3843 0.9333 28 1 4.4729 -2.5683 -0.0891 29 1 7.5219 -1.6768 -0.2081 30 1 6.7391 -3.0185 -1.0771 31 1 7.5807 -1.7403 -1.9860 32 1 5.4612 -2.1724 -2.9532 33 1 5.9351 0.8521 -4.7351 34 1 6.9314 0.1117 -3.4594 35 1 6.2269 -0.9038 -4.7403 36 1 1.9658 1.2001 -6.4014 37 1 1.9724 -2.1223 0.0099 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308816761.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:20 Heat of formation + Delta-G solvation = 79.649050 kcal Electronic energy + Delta-G solvation = -17566.987802 eV Core-core repulsion = 14960.250526 eV Total energy + Delta-G solvation = -2606.737276 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.54557 -37.20943 -33.92267 -32.21314 -31.20366 -30.59261 -27.60049 -27.09033 -24.96525 -24.71515 -21.40384 -20.32085 -20.09057 -19.33621 -16.67277 -16.28159 -15.39337 -14.80277 -14.33124 -13.96175 -13.75536 -13.19357 -12.97897 -12.67472 -12.64735 -12.43927 -12.39367 -12.12192 -11.83261 -11.52226 -11.38003 -11.19141 -11.09805 -10.84222 -10.33100 -10.05300 -9.89968 -9.44342 -9.06814 -8.74088 -8.49177 -7.71272 -7.41029 -5.97650 -3.93237 2.55909 3.15829 3.29356 3.42288 3.44033 3.44210 4.47430 4.70118 5.04247 5.27836 5.33434 5.37509 5.39932 5.50853 5.63731 5.68832 5.77336 5.94727 5.99930 6.11644 6.16005 6.21559 6.25837 6.35298 6.42953 6.52259 6.56583 6.70932 6.81060 7.16389 7.30182 7.67383 7.80248 7.93693 8.34376 8.36006 8.75643 9.12418 9.66077 11.16150 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.017473 B = 0.011263 C = 0.007992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.106698 B = 2485.346004 C = 3502.557182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.248 4.248 3 C 0.045 3.955 4 N -0.295 5.295 5 N -0.347 5.347 6 C 0.150 3.850 7 C 0.064 3.936 8 H 0.073 0.927 9 C -0.165 4.165 10 N -0.665 5.665 11 C 0.187 3.813 12 H 0.040 0.960 13 C -0.182 4.182 14 C -0.489 4.489 15 H 0.078 0.922 16 C 0.068 3.932 17 N -0.902 5.902 18 Si 0.882 3.118 19 H -0.283 1.283 20 H -0.297 1.297 21 H -0.269 1.269 22 C 0.069 3.931 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.171 0.829 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.331 0.669 33 H 0.044 0.956 34 H 0.024 0.976 35 H 0.052 0.948 36 H 0.261 0.739 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.919 -3.780 12.393 13.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.259 4.259 3 C -0.140 4.140 4 N -0.117 5.117 5 N -0.127 5.127 6 C 0.028 3.972 7 C -0.048 4.048 8 H 0.091 0.909 9 C -0.224 4.224 10 N -0.295 5.295 11 C 0.078 3.922 12 H 0.058 0.942 13 C -0.241 4.241 14 C -0.528 4.528 15 H 0.096 0.904 16 C -0.132 4.132 17 N -0.542 5.542 18 Si 0.713 3.287 19 H -0.210 1.210 20 H -0.225 1.225 21 H -0.194 1.194 22 C -0.078 4.078 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.188 0.812 27 H 0.090 0.910 28 H 0.110 0.890 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.149 0.851 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.532 -3.385 12.537 13.754 hybrid contribution 0.634 0.791 -0.754 1.263 sum 5.166 -2.594 11.783 13.125 Atomic orbital electron populations 1.19975 0.90103 1.00906 1.01534 1.19940 0.96631 0.92076 1.17271 1.23531 0.90253 0.99307 1.00942 1.77158 1.21147 0.89236 1.24131 1.48186 1.05049 1.04264 1.55250 1.21788 0.84314 0.92734 0.98390 1.21890 0.90872 0.99991 0.92072 0.90931 1.22257 0.97389 1.00587 1.02158 1.60563 1.52091 1.11778 1.05087 1.19748 0.92764 0.88304 0.91416 0.94205 1.22906 0.99360 1.01250 1.00616 1.20907 1.09594 1.03859 1.18405 0.90412 1.24887 0.95067 0.97834 0.95441 1.69883 1.26299 1.33326 1.24663 0.86945 0.79409 0.83812 0.78508 1.21045 1.22494 1.19377 1.22065 0.84374 0.99390 1.01934 0.92046 0.92908 0.92684 0.81158 0.90996 0.89021 0.92436 0.92075 0.92114 0.85063 0.93713 0.95705 0.92936 0.92873 0.81996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.37 36.00 0.37 -0.59 16 2 C -0.25 -4.33 6.10 -105.06 -0.64 -4.97 16 3 C 0.05 0.84 11.96 -17.37 -0.21 0.64 16 4 N -0.30 -5.91 12.34 30.62 0.38 -5.53 16 5 N -0.35 -6.21 3.60 -61.37 -0.22 -6.43 16 6 C 0.15 2.20 6.14 -4.04 -0.02 2.18 16 7 C 0.06 1.03 2.80 -67.71 -0.19 0.84 16 8 H 0.07 1.38 7.10 -51.93 -0.37 1.01 16 9 C -0.17 -2.01 9.01 37.16 0.33 -1.68 16 10 N -0.67 -13.17 6.09 -100.95 -0.62 -13.78 16 11 C 0.19 4.49 2.03 -68.86 -0.14 4.35 16 12 H 0.04 1.06 6.50 -51.93 -0.34 0.73 16 13 C -0.18 -4.04 8.67 37.16 0.32 -3.72 16 14 C -0.49 -14.09 9.42 -34.44 -0.32 -14.41 16 15 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 16 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 17 N -0.90 -28.31 13.96 55.43 0.77 -27.54 16 18 Si 0.88 23.01 24.39 -169.99 -4.15 18.86 16 19 H -0.28 -7.16 6.85 56.52 0.39 -6.78 16 20 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 21 H -0.27 -6.91 6.53 56.52 0.37 -6.54 16 22 C 0.07 1.19 11.36 -17.22 -0.20 0.99 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.17 2.71 8.06 -52.49 -0.42 2.29 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.09 1.16 8.07 -51.93 -0.42 0.75 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.33 6.10 7.80 -39.29 -0.31 5.79 16 33 H 0.04 1.06 3.24 -51.93 -0.17 0.89 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 1.11 8.10 -51.93 -0.42 0.69 16 36 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 37 H 0.16 2.27 8.06 -52.48 -0.42 1.85 16 LS Contribution 302.60 15.07 4.56 4.56 Total: -1.00 -33.33 302.60 -5.91 -39.25 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.85 Total: 5.05 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -0.79 Total: -14.44 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: 0.32 Total: -53.28 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.15 Total: 18.86 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.33 -5.91 -39.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308816761.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.897 kcal (2) G-P(sol) polarization free energy of solvation -33.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds