Wall clock time and date at job start Mon Mar 30 2020 03:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39870 * 126.04019 * 2 1 4 4 N 1.30833 * 108.20082 * 179.97438 * 3 2 1 5 5 N 1.40080 * 108.20918 * 0.02562 * 4 3 2 6 6 C 1.46496 * 126.04028 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.46768 * 305.01976 * 6 5 4 8 8 H 1.09002 * 109.47025 * 55.00710 * 7 6 5 9 9 C 1.53002 * 109.46907 * 174.99890 * 7 6 5 10 10 N 1.46896 * 109.47421 * 294.99923 * 7 6 5 11 11 C 1.46900 * 110.99955 * 120.45895 * 10 7 6 12 12 H 1.08993 * 109.47330 * 326.40550 * 11 10 7 13 13 C 1.53008 * 109.46702 * 86.40383 * 11 10 7 14 14 C 1.50700 * 109.47300 * 206.40253 * 11 10 7 15 15 H 1.07999 * 119.99766 * 359.97438 * 14 11 10 16 16 C 1.37874 * 120.00141 * 180.02562 * 14 11 10 17 17 N 1.31511 * 119.99860 * 180.02562 * 16 14 11 18 18 Si 1.86803 * 119.99996 * 359.97438 * 16 14 11 19 19 H 1.48494 * 109.46986 * 90.00243 * 18 16 14 20 20 H 1.48496 * 109.46869 * 210.00548 * 18 16 14 21 21 H 1.48500 * 109.46892 * 330.00013 * 18 16 14 22 22 C 1.34950 * 107.92162 * 359.75435 * 5 4 3 23 23 H 1.08999 * 109.47560 * 90.02727 * 1 2 3 24 24 H 1.09008 * 109.47302 * 210.02698 * 1 2 3 25 25 H 1.08999 * 109.47150 * 330.02240 * 1 2 3 26 26 H 1.08002 * 125.89708 * 359.95773 * 3 2 1 27 27 H 1.08998 * 109.47346 * 65.01642 * 6 5 4 28 28 H 1.08997 * 109.47805 * 185.02437 * 6 5 4 29 29 H 1.09001 * 109.47536 * 295.95940 * 9 7 6 30 30 H 1.08998 * 109.47445 * 55.96126 * 9 7 6 31 31 H 1.08999 * 109.47233 * 175.96107 * 9 7 6 32 32 H 1.00898 * 111.00028 * 244.42264 * 10 7 6 33 33 H 1.09001 * 109.47133 * 178.34684 * 13 11 10 34 34 H 1.08994 * 109.46980 * 298.34896 * 13 11 10 35 35 H 1.09000 * 109.46628 * 58.34988 * 13 11 10 36 36 H 0.97003 * 119.99609 * 179.97438 * 17 16 14 37 37 H 1.08010 * 126.12181 * 180.24111 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5753 0.7302 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7745 -1.5248 0.0013 7 6 5.6726 -1.1495 -1.1792 8 1 5.9019 -0.0847 -1.1370 9 6 6.9720 -1.9541 -1.1074 10 7 4.9785 -1.4515 -2.4381 11 6 4.8161 -0.2404 -3.2534 12 1 4.6731 0.6206 -2.6007 13 6 6.0674 -0.0299 -4.1085 14 6 3.6151 -0.3959 -4.1503 15 1 3.0311 -1.3038 -4.1181 16 6 3.2625 0.6204 -5.0127 17 7 2.2141 0.4849 -5.7950 18 14 4.2731 2.1905 -5.0688 19 1 5.3549 2.0470 -6.0760 20 1 3.3971 3.3299 -5.4421 21 1 4.8707 2.4425 -3.7329 22 6 2.3031 -1.0941 0.0051 23 1 -0.3634 -0.0005 -1.0276 24 1 -0.3634 -0.8898 0.5143 25 1 -0.3633 0.8902 0.5135 26 1 1.9950 2.1578 -0.0006 27 1 5.3219 -1.3843 0.9333 28 1 4.4729 -2.5683 -0.0891 29 1 7.5219 -1.6768 -0.2081 30 1 6.7391 -3.0185 -1.0771 31 1 7.5807 -1.7403 -1.9860 32 1 5.4612 -2.1724 -2.9532 33 1 5.9351 0.8521 -4.7351 34 1 6.9314 0.1117 -3.4594 35 1 6.2269 -0.9038 -4.7403 36 1 1.9658 1.2001 -6.4014 37 1 1.9724 -2.1223 0.0099 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308816761.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:19 Heat of formation + Delta-G solvation = 55.493833 kcal Electronic energy + Delta-G solvation = -17568.035250 eV Core-core repulsion = 14960.250526 eV Total energy + Delta-G solvation = -2607.784724 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.87504 -38.72840 -35.63052 -33.97316 -32.75163 -32.01448 -29.16653 -28.24714 -27.07885 -25.94724 -22.75106 -22.23072 -21.40931 -20.68738 -18.70041 -17.73045 -17.03907 -16.46196 -15.77171 -15.62341 -15.16247 -14.66143 -14.44707 -14.43297 -14.08723 -13.84820 -13.81170 -13.51374 -13.08285 -12.97179 -12.90947 -12.70983 -12.41921 -12.35671 -12.03099 -11.98511 -11.50369 -11.26387 -11.10019 -10.75141 -10.12831 -9.15885 -8.88077 -8.27932 -6.26831 1.20708 1.21327 1.29752 1.37829 1.92174 2.06807 2.28567 3.07266 3.35764 3.78183 4.12513 4.17509 4.22242 4.31613 4.46135 4.47133 4.54780 4.58764 4.61864 4.66810 4.78078 4.88065 5.00646 5.02808 5.06981 5.16197 5.23944 5.31764 5.38412 5.44806 5.69780 5.96413 6.03434 6.41878 6.67359 6.77502 6.82757 6.97820 7.37044 8.89615 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.017473 B = 0.011263 C = 0.007992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.106698 B = 2485.346004 C = 3502.557182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.267 4.267 3 C 0.024 3.976 4 N -0.331 5.331 5 N -0.352 5.352 6 C 0.143 3.857 7 C 0.065 3.935 8 H 0.043 0.957 9 C -0.155 4.155 10 N -0.674 5.674 11 C 0.199 3.801 12 H 0.016 0.984 13 C -0.177 4.177 14 C -0.487 4.487 15 H 0.035 0.965 16 C 0.014 3.986 17 N -0.948 5.948 18 Si 0.944 3.056 19 H -0.266 1.266 20 H -0.300 1.300 21 H -0.265 1.265 22 C 0.060 3.940 23 H 0.042 0.958 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.185 0.815 27 H 0.099 0.901 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.340 0.660 33 H 0.029 0.971 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.263 0.737 37 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.650 -4.461 13.665 15.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.278 4.278 3 C -0.160 4.160 4 N -0.153 5.153 5 N -0.133 5.133 6 C 0.021 3.979 7 C -0.046 4.046 8 H 0.062 0.938 9 C -0.213 4.213 10 N -0.304 5.304 11 C 0.089 3.911 12 H 0.034 0.966 13 C -0.236 4.236 14 C -0.526 4.526 15 H 0.053 0.947 16 C -0.183 4.183 17 N -0.589 5.589 18 Si 0.773 3.227 19 H -0.192 1.192 20 H -0.227 1.227 21 H -0.190 1.190 22 C -0.088 4.088 23 H 0.061 0.939 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.202 0.798 27 H 0.117 0.883 28 H 0.133 0.867 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 6.295 -4.083 13.826 15.731 hybrid contribution 0.060 0.900 -1.087 1.413 sum 6.355 -3.183 12.739 14.587 Atomic orbital electron populations 1.19991 0.88268 1.02922 1.00874 1.20411 0.98213 0.91936 1.17268 1.23954 0.90440 1.00564 1.01081 1.77067 1.21966 0.90808 1.25479 1.48497 1.06172 1.03836 1.54746 1.22107 0.83528 0.93385 0.98836 1.21924 0.92962 0.99136 0.90549 0.93836 1.22163 0.94999 1.00997 1.03166 1.60371 1.53930 1.10246 1.05877 1.19356 0.91759 0.89223 0.90770 0.96647 1.22767 0.99337 1.00876 1.00588 1.21179 1.10702 1.01979 1.18745 0.94672 1.25645 0.96157 1.01161 0.95329 1.70027 1.28319 1.34595 1.26005 0.85939 0.78190 0.79669 0.78924 1.19240 1.22743 1.18987 1.22638 0.84288 1.00698 1.01159 0.93878 0.90611 0.91067 0.79840 0.88275 0.86713 0.90149 0.90084 0.92437 0.84135 0.95241 0.92613 0.92093 0.92820 0.79223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.75 10.37 71.24 0.74 -1.01 16 2 C -0.27 -9.24 6.10 -20.15 -0.12 -9.36 16 3 C 0.02 0.91 11.96 85.24 1.02 1.93 16 4 N -0.33 -13.22 12.34 -57.02 -0.70 -13.93 16 5 N -0.35 -12.19 3.60 -348.06 -1.25 -13.45 16 6 C 0.14 3.81 6.14 86.38 0.53 4.34 16 7 C 0.07 1.97 2.80 44.92 0.13 2.10 16 8 H 0.04 1.59 7.10 -2.39 -0.02 1.57 16 9 C -0.15 -3.17 9.01 71.98 0.65 -2.53 16 10 N -0.67 -25.76 6.09 -473.30 -2.88 -28.64 16 11 C 0.20 9.45 2.03 44.17 0.09 9.54 16 12 H 0.02 0.83 6.50 -2.39 -0.02 0.81 16 13 C -0.18 -7.48 8.67 71.98 0.62 -6.86 16 14 C -0.49 -28.58 9.42 25.60 0.24 -28.34 16 15 H 0.03 2.31 8.06 -2.91 -0.02 2.29 16 16 C 0.01 0.82 5.45 84.65 0.46 1.28 16 17 N -0.95 -60.98 13.96 21.45 0.30 -60.68 16 18 Si 0.94 47.93 24.39 68.60 1.67 49.61 16 19 H -0.27 -12.70 6.85 99.48 0.68 -12.02 16 20 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 21 H -0.26 -13.17 6.53 99.48 0.65 -12.52 16 22 C 0.06 1.97 11.36 83.54 0.95 2.92 16 23 H 0.04 1.34 8.14 -2.39 -0.02 1.33 16 24 H 0.07 1.72 8.14 -2.38 -0.02 1.71 16 25 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.18 5.96 8.06 -2.91 -0.02 5.94 16 27 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.11 2.52 8.07 -2.39 -0.02 2.50 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.34 11.86 7.80 -89.70 -0.70 11.16 16 33 H 0.03 1.33 3.24 -2.39 -0.01 1.32 16 34 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.06 2.44 8.10 -2.39 -0.02 2.42 16 36 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 37 H 0.19 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -74.02 302.60 2.70 -71.32 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.26 Total: 21.75 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: 5.30 Total: -25.98 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -4.54 Total: -116.70 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 1.67 Total: 49.61 kcal Total: -74.02 2.70 -71.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308816761.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.814 kcal (2) G-P(sol) polarization free energy of solvation -74.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds