Wall clock time and date at job start Mon Mar 30 2020 03:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34122 * 125.99232 * 2 1 4 4 C 1.30497 * 109.25816 * 180.02562 * 3 2 1 5 5 C 1.50710 * 125.64844 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.46596 * 214.97505 * 5 4 3 7 7 C 1.52996 * 109.47096 * 94.97873 * 5 4 3 8 8 N 1.46898 * 109.47055 * 334.97092 * 5 4 3 9 9 C 1.46899 * 111.00190 * 274.74057 * 8 5 4 10 10 H 1.09002 * 109.46684 * 33.57998 * 9 8 5 11 11 C 1.52991 * 109.47103 * 273.57968 * 9 8 5 12 12 C 1.50695 * 109.46844 * 153.57703 * 9 8 5 13 13 H 1.08007 * 120.00528 * 359.97438 * 12 9 8 14 14 C 1.37881 * 120.00106 * 179.97438 * 12 9 8 15 15 N 1.31519 * 119.99824 * 0.02562 * 14 12 9 16 16 Si 1.86798 * 120.00318 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.46979 * 90.00210 * 16 14 12 18 18 H 1.48498 * 109.47292 * 210.00161 * 16 14 12 19 19 H 1.48504 * 109.47165 * 330.00236 * 16 14 12 20 20 N 1.35043 * 108.69916 * 359.76523 * 4 3 2 21 21 H 0.97004 * 126.39758 * 180.26482 * 20 4 3 22 22 C 1.34669 * 125.98842 * 179.97438 * 2 1 3 23 23 C 1.50701 * 126.59046 * 359.97058 * 22 2 1 24 24 H 1.09003 * 109.46859 * 270.00212 * 1 2 3 25 25 H 1.09001 * 109.47218 * 29.99600 * 1 2 3 26 26 H 1.08993 * 109.47278 * 149.99971 * 1 2 3 27 27 H 1.09008 * 109.47018 * 295.25543 * 7 5 4 28 28 H 1.08996 * 109.47743 * 55.25661 * 7 5 4 29 29 H 1.08996 * 109.47060 * 175.25992 * 7 5 4 30 30 H 1.00900 * 110.99648 * 38.70004 * 8 5 4 31 31 H 1.09001 * 109.47423 * 54.05175 * 11 9 8 32 32 H 1.08999 * 109.47303 * 174.05528 * 11 9 8 33 33 H 1.09003 * 109.47522 * 294.05104 * 11 9 8 34 34 H 0.96998 * 119.99852 * 179.97438 * 15 14 12 35 35 H 1.08992 * 109.47815 * 89.99377 * 23 22 2 36 36 H 1.08998 * 109.47324 * 329.99049 * 23 22 2 37 37 H 1.09001 * 109.46791 * 209.99906 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5449 0.7094 -0.0006 5 6 4.7387 1.6293 -0.0002 6 1 5.5403 1.1844 -0.5898 7 6 5.2194 1.8405 1.4369 8 7 4.3604 2.9226 -0.5852 9 6 4.4720 2.8909 -2.0496 10 1 4.2210 1.8938 -2.4115 11 6 5.9048 3.2367 -2.4595 12 6 3.5218 3.8962 -2.6475 13 1 2.8972 4.4982 -2.0041 14 6 3.4498 4.0475 -4.0161 15 7 4.2100 3.3142 -4.7997 16 14 2.2726 5.2942 -4.7574 17 1 2.9613 6.6023 -4.8984 18 1 1.8285 4.8221 -6.0934 19 1 1.0923 5.4492 -3.8696 20 7 3.5912 -0.6402 0.0043 21 1 4.3913 -1.1887 0.0087 22 6 2.2984 -1.0897 0.0005 23 6 1.8472 -2.5275 0.0018 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5138 27 1 4.4487 2.3616 2.0050 28 1 5.4201 0.8738 1.8987 29 1 6.1318 2.4367 1.4309 30 1 3.4308 3.1908 -0.2990 31 1 6.6002 2.5750 -1.9431 32 1 6.0151 3.1106 -3.5365 33 1 6.1201 4.2709 -2.1909 34 1 4.1591 3.4204 -5.7625 35 1 1.7378 -2.8750 -1.0255 36 1 0.8895 -2.6074 0.5162 37 1 2.5878 -3.1402 0.5157 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308830929.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:14 Heat of formation + Delta-G solvation = 40.764045 kcal Electronic energy + Delta-G solvation = -17241.961207 eV Core-core repulsion = 14633.537751 eV Total energy + Delta-G solvation = -2608.423456 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.78687 -36.41811 -33.41623 -32.73144 -31.87166 -30.31741 -28.32177 -27.00339 -25.18444 -24.98435 -22.24681 -20.36155 -19.85882 -18.92899 -17.22413 -16.22399 -15.18190 -14.85203 -14.57268 -13.93105 -13.34219 -13.14006 -12.96529 -12.78293 -12.72943 -12.41730 -12.30516 -11.90933 -11.79122 -11.67151 -11.29454 -10.88957 -10.69955 -10.58347 -10.33012 -10.09274 -9.84273 -9.47662 -9.39502 -8.74324 -8.41057 -7.70600 -7.34812 -5.93728 -3.97174 2.34036 3.36975 3.40875 3.42442 3.47939 3.51243 4.49121 4.71347 5.09272 5.15292 5.29162 5.39747 5.42572 5.52430 5.60086 5.71363 5.81474 5.82045 5.94245 6.08011 6.13068 6.25165 6.44139 6.52097 6.58474 6.90416 7.16183 7.16543 7.27648 7.55229 7.72655 7.88605 7.98604 8.31426 8.44983 8.54967 8.78652 9.12232 9.67237 11.13674 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.022140 B = 0.007713 C = 0.006509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.361208 B = 3629.320598 C = 4300.443339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.004 3.996 3 N -0.474 5.474 4 C 0.203 3.797 5 C 0.166 3.834 6 H 0.082 0.918 7 C -0.131 4.131 8 N -0.665 5.665 9 C 0.213 3.787 10 H 0.000 1.000 11 C -0.123 4.123 12 C -0.507 4.507 13 H 0.060 0.940 14 C 0.060 3.940 15 N -0.895 5.895 16 Si 0.895 3.105 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.274 1.274 20 N -0.567 5.567 21 H 0.412 0.588 22 C -0.047 4.047 23 C -0.070 4.070 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.351 0.649 31 H 0.003 0.997 32 H 0.076 0.924 33 H 0.034 0.966 34 H 0.259 0.741 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.604 -10.638 10.018 14.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.125 4.125 3 N -0.193 5.193 4 C -0.064 4.064 5 C 0.052 3.948 6 H 0.100 0.900 7 C -0.189 4.189 8 N -0.297 5.297 9 C 0.105 3.895 10 H 0.017 0.983 11 C -0.182 4.182 12 C -0.546 4.546 13 H 0.078 0.922 14 C -0.141 4.141 15 N -0.534 5.534 16 Si 0.724 3.276 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.199 1.199 20 N -0.170 5.170 21 H 0.249 0.751 22 C -0.162 4.162 23 C -0.128 4.128 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.172 0.828 31 H 0.022 0.978 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.293 -9.523 9.896 13.794 hybrid contribution -0.662 -1.082 -0.875 1.541 sum -1.954 -10.605 9.020 14.059 Atomic orbital electron populations 1.19983 0.88231 1.02496 1.01497 1.20471 0.96227 0.88127 1.07681 1.70009 0.99716 1.30073 1.19539 1.24806 0.96841 0.81484 1.03221 1.20223 0.89701 0.88272 0.96654 0.90036 1.21749 1.01888 1.00494 0.94803 1.61023 1.33776 1.21947 1.12967 1.19093 0.93762 0.95702 0.80902 0.98257 1.21739 0.96111 0.98238 1.02063 1.21239 1.21111 1.20714 0.91555 0.92165 1.24895 0.95912 0.96131 0.97134 1.69912 1.39519 1.40157 1.03813 0.86534 0.81349 0.81430 0.78331 1.20689 1.21441 1.19851 1.43166 1.07678 1.08299 1.57902 0.75133 1.20890 0.84134 0.96961 1.14233 1.20124 1.01393 0.88981 1.02295 0.91952 0.91042 0.91871 0.92219 0.93767 0.91279 0.82823 0.97816 0.90510 0.94729 0.93164 0.91353 0.90386 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.05 36.01 0.36 -0.55 16 2 C 0.00 0.08 7.09 -82.86 -0.59 -0.51 16 3 N -0.47 -9.84 10.31 -7.07 -0.07 -9.91 16 4 C 0.20 3.81 6.79 -155.41 -1.06 2.76 16 5 C 0.17 3.06 2.94 -68.86 -0.20 2.86 16 6 H 0.08 1.49 7.20 -51.93 -0.37 1.12 16 7 C -0.13 -1.95 9.50 37.16 0.35 -1.60 16 8 N -0.67 -14.92 6.04 -102.17 -0.62 -15.53 16 9 C 0.21 5.59 2.40 -68.87 -0.17 5.43 16 10 H 0.00 -0.01 7.63 -51.93 -0.40 -0.40 16 11 C -0.12 -3.11 9.12 37.15 0.34 -2.77 16 12 C -0.51 -14.59 8.59 -34.44 -0.30 -14.89 16 13 H 0.06 1.74 7.60 -52.48 -0.40 1.34 16 14 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 15 N -0.89 -26.42 11.39 55.43 0.63 -25.79 16 16 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 20 N -0.57 -8.72 6.15 -6.54 -0.04 -8.77 16 21 H 0.41 4.89 8.96 -40.82 -0.37 4.53 16 22 C -0.05 -0.72 7.24 -81.60 -0.59 -1.31 16 23 C -0.07 -0.73 10.05 36.01 0.36 -0.37 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 26 H 0.06 0.74 7.80 -51.93 -0.40 0.33 16 27 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.35 8.31 7.23 -39.29 -0.28 8.02 16 31 H 0.00 0.06 7.49 -51.93 -0.39 -0.32 16 32 H 0.08 2.10 6.25 -51.93 -0.32 1.78 16 33 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.70 7.81 -51.93 -0.41 0.29 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 305.23 15.07 4.60 4.60 Total: -1.00 -32.42 305.23 -7.96 -40.38 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -5.86 Total: 7.12 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -1.58 Total: -9.31 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: -0.10 Total: -60.01 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.42 -7.96 -40.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308830929.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.140 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds