Wall clock time and date at job start Mon Mar 30 2020 04:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.53002 * 109.46965 * 240.00115 * 2 1 3 5 5 C 1.50699 * 109.47078 * 175.00074 * 4 2 1 6 6 H 1.08007 * 120.00099 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00509 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99886 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00569 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47061 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47053 * 120.00015 * 9 7 5 12 12 H 1.48497 * 109.47415 * 240.00074 * 9 7 5 13 13 N 1.46898 * 109.47140 * 120.00406 * 2 1 3 14 14 C 1.46906 * 110.99888 * 275.00023 * 13 2 1 15 15 C 1.52999 * 109.46897 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.46623 * 179.97438 * 15 14 13 17 17 N 1.46500 * 109.46998 * 179.97438 * 16 15 14 18 18 C 1.36882 * 126.39703 * 89.99706 * 17 16 15 19 19 C 1.34672 * 106.81613 * 180.02562 * 18 17 16 20 20 N 1.34132 * 108.01971 * 359.97438 * 19 18 17 21 21 C 1.30498 * 109.25622 * 359.72931 * 20 19 18 22 22 H 1.09000 * 109.47000 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47134 * 299.99882 * 1 2 3 24 24 H 1.09006 * 109.47131 * 60.00086 * 1 2 3 25 25 H 1.08997 * 109.47201 * 294.99945 * 4 2 1 26 26 H 1.09003 * 109.47510 * 55.00249 * 4 2 1 27 27 H 0.96993 * 120.00564 * 179.97438 * 8 7 5 28 28 H 1.00901 * 111.00121 * 151.04609 * 13 2 1 29 29 H 1.09000 * 109.47033 * 59.99886 * 14 13 2 30 30 H 1.09001 * 109.46544 * 299.99942 * 14 13 2 31 31 H 1.09000 * 109.47486 * 60.00024 * 15 14 13 32 32 H 1.09001 * 109.47362 * 299.99301 * 15 14 13 33 33 H 1.08993 * 109.46955 * 300.00075 * 16 15 14 34 34 H 1.09000 * 109.47050 * 59.99904 * 16 15 14 35 35 H 1.07995 * 126.59135 * 359.97043 * 18 17 16 36 36 H 1.08003 * 125.99119 * 180.02562 * 19 18 17 37 37 H 1.08004 * 125.64628 * 180.28684 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0790 -0.0855 -0.5396 7 6 4.2304 -1.1926 -2.3584 8 7 3.5764 -1.8369 -3.3001 9 14 6.0919 -1.0602 -2.4374 10 1 6.5837 -0.2910 -1.2662 11 1 6.6861 -2.4211 -2.4201 12 1 6.4860 -0.3639 -3.6884 13 7 2.0197 -0.6926 1.1994 14 6 2.0824 0.2225 2.3469 15 6 2.5962 -0.5331 3.5741 16 6 2.6622 0.4202 4.7691 17 7 3.1536 -0.3033 5.9444 18 6 4.4609 -0.4388 6.3269 19 6 4.4626 -1.1748 7.4547 20 7 3.1909 -1.4798 7.7530 21 6 2.4009 -0.9560 6.8561 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.7516 -1.7715 -1.2057 26 1 1.6054 -0.2617 -2.1371 27 1 4.0606 -2.2430 -4.0359 28 1 2.9173 -1.1206 1.0286 29 1 1.0870 0.6162 2.5525 30 1 2.7589 1.0461 2.1182 31 1 3.5917 -0.9264 3.3682 32 1 1.9201 -1.3569 3.8030 33 1 3.3384 1.2437 4.5400 34 1 1.6669 0.8139 4.9752 35 1 5.3249 -0.0342 5.8209 36 1 5.3349 -1.4673 8.0203 37 1 1.3238 -1.0342 6.8434 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308850443.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:02 Heat of formation + Delta-G solvation = 42.221717 kcal Electronic energy + Delta-G solvation = -16253.222742 eV Core-core repulsion = 13644.862495 eV Total energy + Delta-G solvation = -2608.360247 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.06356 -37.18175 -35.16948 -32.94011 -31.70822 -29.56912 -28.80287 -27.46041 -24.91592 -23.07103 -21.51232 -21.38616 -20.89058 -19.44234 -17.44699 -16.43512 -15.77244 -15.32534 -14.76057 -14.71311 -14.25595 -14.05840 -13.76688 -13.36805 -13.17839 -12.48703 -12.40106 -11.91360 -11.88382 -11.47632 -11.24940 -11.06067 -10.92152 -10.69275 -10.54819 -10.25679 -10.05023 -9.68122 -9.29390 -9.12783 -8.58962 -8.46048 -7.77408 -6.08914 -4.12650 2.00004 2.70858 3.12297 3.24018 3.32259 3.33943 4.37309 4.47424 4.51925 4.65054 4.80851 5.03005 5.14709 5.27187 5.31326 5.37200 5.48043 5.62655 5.71580 5.87573 6.04063 6.10796 6.18197 6.23072 6.24790 6.46067 6.66496 6.85585 6.86881 7.10547 7.43544 7.56693 7.89785 7.96638 8.00665 8.15866 8.29904 8.93604 9.52002 11.01992 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.024262 B = 0.004756 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.771527 B = 5886.227084 C = 6790.521903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.087 3.913 3 H 0.029 0.971 4 C 0.019 3.981 5 C -0.526 4.526 6 H 0.051 0.949 7 C 0.061 3.939 8 N -0.890 5.890 9 Si 0.890 3.110 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.683 5.683 14 C 0.063 3.937 15 C -0.132 4.132 16 C 0.105 3.895 17 N -0.455 5.455 18 C -0.055 4.055 19 C -0.036 4.036 20 N -0.501 5.501 21 C 0.180 3.820 22 H 0.055 0.945 23 H 0.035 0.965 24 H 0.048 0.952 25 H 0.026 0.974 26 H 0.022 0.978 27 H 0.261 0.739 28 H 0.355 0.645 29 H 0.065 0.935 30 H 0.025 0.975 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.172 0.828 36 H 0.167 0.833 37 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.815 5.299 15.207 16.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.047 0.953 4 C -0.018 4.018 5 C -0.564 4.564 6 H 0.069 0.931 7 C -0.141 4.141 8 N -0.528 5.528 9 Si 0.718 3.282 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.317 5.317 14 C -0.068 4.068 15 C -0.171 4.171 16 C -0.018 4.018 17 N -0.137 5.137 18 C -0.188 4.188 19 C -0.183 4.183 20 N -0.219 5.219 21 C -0.102 4.102 22 H 0.074 0.926 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.071 0.929 28 H 0.176 0.824 29 H 0.084 0.916 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.189 0.811 36 H 0.184 0.816 37 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -2.711 4.564 15.745 16.616 hybrid contribution 2.146 1.072 -1.187 2.676 sum -0.565 5.636 14.558 15.621 Atomic orbital electron populations 1.21797 0.96660 1.01379 0.99484 1.21620 0.93383 0.95841 0.91341 0.95281 1.19290 0.95451 0.96237 0.90805 1.21188 0.92204 1.34613 1.08386 0.93055 1.24991 0.98286 0.95124 0.95677 1.69965 1.35472 1.35508 1.11898 0.86579 0.85881 0.77836 0.77928 1.19921 1.20897 1.20984 1.60551 1.34823 1.31944 1.04425 1.21815 0.99704 0.94247 0.91015 1.21943 1.03062 0.98750 0.93327 1.21957 1.01369 0.94929 0.83551 1.45650 1.06906 1.40117 1.21014 1.22776 0.87133 1.08043 1.00862 1.22281 0.95298 1.03079 0.97685 1.70274 1.01931 1.23188 1.26500 1.24987 0.99067 0.97895 0.88277 0.92609 0.94551 0.93256 0.95559 0.95989 0.92922 0.82393 0.91613 0.95674 0.91195 0.90351 0.89085 0.88751 0.81070 0.81571 0.78076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.41 37.16 0.35 -1.97 16 2 C 0.09 1.74 2.59 -67.71 -0.18 1.56 16 3 H 0.03 0.59 7.80 -51.93 -0.40 0.19 16 4 C 0.02 0.48 4.57 -27.88 -0.13 0.36 16 5 C -0.53 -14.10 8.12 -34.44 -0.28 -14.38 16 6 H 0.05 1.33 7.49 -52.48 -0.39 0.94 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 9 Si 0.89 21.02 29.54 -169.99 -5.02 15.99 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.68 -12.29 6.31 -106.72 -0.67 -12.96 16 14 C 0.06 0.86 5.48 -3.82 -0.02 0.84 16 15 C -0.13 -1.52 5.80 -26.73 -0.15 -1.67 16 16 C 0.10 0.93 6.15 -4.04 -0.02 0.91 16 17 N -0.45 -4.86 2.75 -118.58 -0.33 -5.18 16 18 C -0.05 -0.60 11.58 -16.56 -0.19 -0.79 16 19 C -0.04 -0.43 11.87 -17.81 -0.21 -0.64 16 20 N -0.50 -6.86 11.25 -14.66 -0.16 -7.03 16 21 C 0.18 2.05 12.56 -90.38 -1.14 0.92 16 22 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.04 0.54 7.45 -51.93 -0.39 0.15 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.36 7.05 7.21 -39.29 -0.28 6.77 16 29 H 0.07 0.82 7.44 -51.93 -0.39 0.44 16 30 H 0.03 0.35 8.06 -51.93 -0.42 -0.07 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.17 1.60 8.06 -52.48 -0.42 1.18 16 37 H 0.20 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 311.12 15.07 4.69 4.69 Total: -1.00 -30.98 311.12 -8.89 -39.87 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.06 Total: 3.22 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -2.07 Total: -13.27 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.43 Total: -50.51 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.98 -8.89 -39.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308850443.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.094 kcal (2) G-P(sol) polarization free energy of solvation -30.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds