Wall clock time and date at job start Mon Mar 30 2020 04:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.53002 * 109.46965 * 240.00115 * 2 1 3 5 5 C 1.50699 * 109.47078 * 175.00074 * 4 2 1 6 6 H 1.08007 * 120.00099 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00509 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99886 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00569 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47061 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47053 * 120.00015 * 9 7 5 12 12 H 1.48497 * 109.47415 * 240.00074 * 9 7 5 13 13 N 1.46898 * 109.47140 * 120.00406 * 2 1 3 14 14 C 1.46906 * 110.99888 * 275.00023 * 13 2 1 15 15 C 1.52999 * 109.46897 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.46623 * 179.97438 * 15 14 13 17 17 N 1.46500 * 109.46998 * 179.97438 * 16 15 14 18 18 C 1.36882 * 126.39703 * 89.99706 * 17 16 15 19 19 C 1.34672 * 106.81613 * 180.02562 * 18 17 16 20 20 N 1.34132 * 108.01971 * 359.97438 * 19 18 17 21 21 C 1.30498 * 109.25622 * 359.72931 * 20 19 18 22 22 H 1.09000 * 109.47000 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47134 * 299.99882 * 1 2 3 24 24 H 1.09006 * 109.47131 * 60.00086 * 1 2 3 25 25 H 1.08997 * 109.47201 * 294.99945 * 4 2 1 26 26 H 1.09003 * 109.47510 * 55.00249 * 4 2 1 27 27 H 0.96993 * 120.00564 * 179.97438 * 8 7 5 28 28 H 1.00901 * 111.00121 * 151.04609 * 13 2 1 29 29 H 1.09000 * 109.47033 * 59.99886 * 14 13 2 30 30 H 1.09001 * 109.46544 * 299.99942 * 14 13 2 31 31 H 1.09000 * 109.47486 * 60.00024 * 15 14 13 32 32 H 1.09001 * 109.47362 * 299.99301 * 15 14 13 33 33 H 1.08993 * 109.46955 * 300.00075 * 16 15 14 34 34 H 1.09000 * 109.47050 * 59.99904 * 16 15 14 35 35 H 1.07995 * 126.59135 * 359.97043 * 18 17 16 36 36 H 1.08003 * 125.99119 * 180.02562 * 19 18 17 37 37 H 1.08004 * 125.64628 * 180.28684 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0790 -0.0855 -0.5396 7 6 4.2304 -1.1926 -2.3584 8 7 3.5764 -1.8369 -3.3001 9 14 6.0919 -1.0602 -2.4374 10 1 6.5837 -0.2910 -1.2662 11 1 6.6861 -2.4211 -2.4201 12 1 6.4860 -0.3639 -3.6884 13 7 2.0197 -0.6926 1.1994 14 6 2.0824 0.2225 2.3469 15 6 2.5962 -0.5331 3.5741 16 6 2.6622 0.4202 4.7691 17 7 3.1536 -0.3033 5.9444 18 6 4.4609 -0.4388 6.3269 19 6 4.4626 -1.1748 7.4547 20 7 3.1909 -1.4798 7.7530 21 6 2.4009 -0.9560 6.8561 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.7516 -1.7715 -1.2057 26 1 1.6054 -0.2617 -2.1371 27 1 4.0606 -2.2430 -4.0359 28 1 2.9173 -1.1206 1.0286 29 1 1.0870 0.6162 2.5525 30 1 2.7589 1.0461 2.1182 31 1 3.5917 -0.9264 3.3682 32 1 1.9201 -1.3569 3.8030 33 1 3.3384 1.2437 4.5400 34 1 1.6669 0.8139 4.9752 35 1 5.3249 -0.0342 5.8209 36 1 5.3349 -1.4673 8.0203 37 1 1.3238 -1.0342 6.8434 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308850443.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:02 Heat of formation + Delta-G solvation = 23.808701 kcal Electronic energy + Delta-G solvation = -16254.021190 eV Core-core repulsion = 13644.862495 eV Total energy + Delta-G solvation = -2609.158695 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.88491 -38.56096 -36.27827 -34.75258 -33.05561 -30.49492 -29.95636 -29.27642 -26.01628 -24.89193 -22.57970 -22.22336 -21.73241 -21.02548 -18.53269 -18.25543 -17.00247 -16.51562 -16.25796 -15.95918 -15.46519 -15.00983 -14.80276 -14.69955 -14.14384 -13.86249 -13.50474 -13.42319 -13.36838 -13.10662 -12.73576 -12.58377 -12.36327 -12.25726 -12.16040 -11.72156 -11.24740 -11.01073 -10.92394 -10.60333 -10.51641 -9.42374 -9.19079 -8.21036 -6.31798 1.17976 1.38072 1.39269 1.50366 1.94328 2.25242 2.38589 3.10732 3.39857 3.77651 3.91369 4.00286 4.14514 4.26970 4.28571 4.37578 4.51218 4.61086 4.64451 4.71580 4.77474 4.80714 4.99682 5.05012 5.21225 5.22608 5.34683 5.40964 5.49504 5.55064 5.83339 5.85273 6.19012 6.32047 6.42622 6.62351 6.84339 7.16825 7.37473 8.90871 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.024262 B = 0.004756 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.771527 B = 5886.227084 C = 6790.521903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.096 3.904 3 H 0.028 0.972 4 C 0.025 3.975 5 C -0.533 4.533 6 H 0.059 0.941 7 C 0.004 3.996 8 N -0.931 5.931 9 Si 0.960 3.040 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.281 1.281 13 N -0.691 5.691 14 C 0.064 3.936 15 C -0.120 4.120 16 C 0.111 3.889 17 N -0.456 5.456 18 C -0.057 4.057 19 C -0.059 4.059 20 N -0.541 5.541 21 C 0.175 3.825 22 H 0.046 0.954 23 H 0.066 0.934 24 H 0.050 0.950 25 H -0.005 1.005 26 H -0.006 1.006 27 H 0.263 0.737 28 H 0.341 0.659 29 H 0.085 0.915 30 H 0.027 0.973 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.120 0.880 35 H 0.193 0.807 36 H 0.179 0.821 37 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.468 6.688 16.439 17.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.014 4.014 3 H 0.046 0.954 4 C -0.013 4.013 5 C -0.571 4.571 6 H 0.077 0.923 7 C -0.195 4.195 8 N -0.571 5.571 9 Si 0.786 3.214 10 H -0.185 1.185 11 H -0.207 1.207 12 H -0.207 1.207 13 N -0.323 5.323 14 C -0.065 4.065 15 C -0.159 4.159 16 C -0.011 4.011 17 N -0.138 5.138 18 C -0.191 4.191 19 C -0.206 4.206 20 N -0.260 5.260 21 C -0.107 4.107 22 H 0.065 0.935 23 H 0.085 0.915 24 H 0.070 0.930 25 H 0.013 0.987 26 H 0.013 0.987 27 H 0.072 0.928 28 H 0.160 0.840 29 H 0.103 0.897 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.123 0.877 34 H 0.138 0.862 35 H 0.210 0.790 36 H 0.196 0.804 37 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -2.372 5.973 16.997 18.172 hybrid contribution 2.002 0.628 -1.565 2.617 sum -0.370 6.601 15.432 16.789 Atomic orbital electron populations 1.21716 0.94409 1.01347 1.01123 1.21420 0.95159 0.94855 0.89958 0.95379 1.19164 0.94885 0.94700 0.92513 1.21559 0.93273 1.34015 1.08290 0.92288 1.25901 1.03334 0.94833 0.95387 1.70100 1.37522 1.36774 1.12740 0.85470 0.79824 0.77887 0.78266 1.18518 1.20684 1.20693 1.60584 1.33941 1.33000 1.04779 1.21905 1.01048 0.93655 0.89941 1.21773 1.01683 0.98854 0.93544 1.22001 1.03251 0.94098 0.81753 1.45770 1.06792 1.40028 1.21199 1.23166 0.87957 1.07405 1.00529 1.22648 0.95430 1.03855 0.98688 1.70243 1.02972 1.24690 1.28102 1.25545 1.00169 0.97160 0.87846 0.93478 0.91470 0.93049 0.98667 0.98745 0.92847 0.84001 0.89681 0.95432 0.92845 0.91149 0.87659 0.86170 0.78958 0.80390 0.75468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 9.41 71.98 0.68 -3.52 16 2 C 0.10 3.73 2.59 44.92 0.12 3.85 16 3 H 0.03 1.10 7.80 -2.39 -0.02 1.08 16 4 C 0.02 1.26 4.57 29.85 0.14 1.40 16 5 C -0.53 -28.78 8.12 25.60 0.21 -28.58 16 6 H 0.06 3.03 7.49 -2.91 -0.02 3.00 16 7 C 0.00 0.20 5.46 84.65 0.46 0.66 16 8 N -0.93 -55.70 13.29 21.45 0.28 -55.41 16 9 Si 0.96 43.07 29.54 68.60 2.03 45.10 16 10 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 13 N -0.69 -24.05 6.31 -491.56 -3.10 -27.15 16 14 C 0.06 1.58 5.48 86.30 0.47 2.05 16 15 C -0.12 -2.46 5.80 30.60 0.18 -2.28 16 16 C 0.11 1.60 6.15 86.38 0.53 2.13 16 17 N -0.46 -8.63 2.75 -529.06 -1.46 -10.08 16 18 C -0.06 -1.13 11.58 83.09 0.96 -0.17 16 19 C -0.06 -1.37 11.87 83.52 0.99 -0.38 16 20 N -0.54 -14.35 11.25 -200.30 -2.25 -16.61 16 21 C 0.18 3.66 12.56 180.26 2.26 5.92 16 22 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.07 1.78 7.45 -2.39 -0.02 1.77 16 24 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 25 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 26 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 27 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 28 H 0.34 13.44 7.21 -89.69 -0.65 12.80 16 29 H 0.08 1.79 7.44 -2.39 -0.02 1.77 16 30 H 0.03 0.68 8.06 -2.39 -0.02 0.66 16 31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.19 2.80 8.06 -2.91 -0.02 2.78 16 36 H 0.18 3.34 8.06 -2.91 -0.02 3.32 16 37 H 0.23 3.12 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -67.65 311.12 2.88 -64.76 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.38 Total: 18.30 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: 7.00 Total: -18.91 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -6.53 Total: -109.25 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -67.65 2.88 -64.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308850443.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.572 kcal (2) G-P(sol) polarization free energy of solvation -67.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds