Wall clock time and date at job start Mon Mar 30 2020 04:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 N 1.46896 * 109.47181 * 65.00049 * 4 2 1 6 6 C 1.46904 * 111.00016 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47132 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99986 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99559 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00174 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99478 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47505 * 59.99901 * 11 9 7 13 13 H 1.48508 * 109.47058 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47376 * 299.99578 * 11 9 7 15 15 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 16 16 C 1.50698 * 109.46984 * 294.99719 * 15 2 1 17 17 C 1.35318 * 126.12653 * 85.02714 * 16 15 2 18 18 C 1.39873 * 107.91781 * 179.97438 * 17 16 15 19 19 N 1.30833 * 108.20490 * 0.02562 * 18 17 16 20 20 N 1.34954 * 126.12674 * 264.71732 * 16 15 2 21 21 C 1.46493 * 126.03809 * 0.03456 * 20 16 15 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 1.09008 * 109.46873 * 184.99985 * 4 2 1 26 26 H 1.08997 * 109.47047 * 304.99674 * 4 2 1 27 27 H 1.00896 * 111.00229 * 56.04575 * 5 4 2 28 28 H 1.08998 * 109.47006 * 300.00352 * 6 5 4 29 29 H 1.09003 * 109.46947 * 60.00060 * 6 5 4 30 30 H 0.97006 * 119.99650 * 180.02562 * 10 9 7 31 31 H 1.08990 * 109.47170 * 54.99895 * 15 2 1 32 32 H 1.09001 * 109.46952 * 174.99972 * 15 2 1 33 33 H 1.07996 * 126.03847 * 359.97438 * 17 16 15 34 34 H 1.08005 * 125.89604 * 180.02562 * 18 17 16 35 35 H 1.09001 * 109.47482 * 90.00022 * 21 20 16 36 36 H 1.08999 * 109.47324 * 210.00053 * 21 20 16 37 37 H 1.09001 * 109.47430 * 330.00176 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6513 0.0375 -2.4456 6 6 2.1256 -0.6264 -3.6672 7 6 1.7085 0.1787 -4.8708 8 1 1.1476 1.0925 -4.7413 9 6 2.0431 -0.2512 -6.1374 10 7 2.7258 -1.3642 -6.2951 11 14 1.5267 0.7472 -7.6294 12 1 2.1181 2.1067 -7.5441 13 1 2.0051 0.0754 -8.8644 14 1 0.0459 0.8530 -7.6659 15 6 2.0400 -0.7213 1.2492 16 6 1.6413 0.0570 2.4765 17 6 0.4575 -0.0293 3.1263 18 6 0.4953 0.8557 4.2088 19 7 1.6597 1.4523 4.2086 20 7 2.4032 0.9605 3.1280 21 6 3.7656 1.3596 2.7665 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 3.1263 -0.7995 -1.2057 26 1 1.6053 -1.7197 -1.2952 27 1 1.9880 0.9873 -2.3967 28 1 3.2125 -0.7037 -3.6401 29 1 1.6919 -1.6245 -3.7301 30 1 2.9614 -1.6664 -7.1863 31 1 1.6054 -1.7198 1.2951 32 1 3.1263 -0.7995 1.2055 33 1 -0.3702 -0.6685 2.8567 34 1 -0.2996 1.0185 4.9217 35 1 3.7265 2.2061 2.0809 36 1 4.3112 1.6453 3.6658 37 1 4.2729 0.5244 2.2837 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380051369.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:23 Heat of formation + Delta-G solvation = 59.928684 kcal Electronic energy + Delta-G solvation = -16416.424032 eV Core-core repulsion = 13808.831617 eV Total energy + Delta-G solvation = -2607.592415 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.29694 -36.97931 -34.15649 -33.26444 -32.17891 -30.08231 -27.01878 -26.90909 -26.59595 -24.08392 -21.44578 -21.16028 -20.28790 -19.50575 -16.70176 -16.34240 -15.56880 -15.16177 -14.66112 -14.58092 -14.28113 -13.83899 -13.69889 -12.86328 -12.83117 -12.54460 -12.51119 -12.22837 -12.15087 -11.44785 -11.38790 -10.97737 -10.89549 -10.68069 -10.67475 -10.43014 -10.38734 -9.88824 -9.29645 -9.16578 -8.49415 -8.48167 -7.29507 -6.04363 -4.06393 1.84444 2.47534 2.82221 3.32866 3.36732 3.39957 4.41053 4.47947 4.53101 4.88088 4.97092 5.07528 5.09071 5.26216 5.31537 5.33370 5.50494 5.63580 5.71186 5.74941 5.82438 5.91169 6.13878 6.18169 6.29151 6.35536 6.58287 6.62912 6.73832 6.97988 7.23604 7.40432 7.68106 7.77212 8.11850 8.37838 8.60151 9.02764 9.58645 11.06735 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.049479 B = 0.003956 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.765959 B = 7075.650630 C = 7171.614296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.079 4.079 3 H 0.063 0.937 4 C 0.064 3.936 5 N -0.687 5.687 6 C 0.194 3.806 7 C -0.515 4.515 8 H 0.062 0.938 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.899 3.101 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.276 1.276 15 C -0.057 4.057 16 C 0.100 3.900 17 C -0.274 4.274 18 C 0.044 3.956 19 N -0.307 5.307 20 N -0.374 5.374 21 C 0.099 3.901 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.070 0.930 25 H 0.016 0.984 26 H 0.066 0.934 27 H 0.327 0.673 28 H -0.015 1.015 29 H 0.028 0.972 30 H 0.262 0.738 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.146 0.854 34 H 0.180 0.820 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.430 2.099 18.061 18.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 H 0.081 0.919 4 C -0.066 4.066 5 N -0.317 5.317 6 C 0.068 3.932 7 C -0.554 4.554 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.538 5.538 11 Si 0.727 3.273 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.201 1.201 15 C -0.096 4.096 16 C -0.027 4.027 17 C -0.303 4.303 18 C -0.142 4.142 19 N -0.128 5.128 20 N -0.157 5.157 21 C -0.043 4.043 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.089 0.911 25 H 0.034 0.966 26 H 0.084 0.916 27 H 0.143 0.857 28 H 0.003 0.997 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.164 0.836 34 H 0.197 0.803 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.076 2.588 18.432 18.613 hybrid contribution 0.271 0.044 -1.248 1.278 sum 0.195 2.632 17.184 17.385 Atomic orbital electron populations 1.21780 0.94072 1.01781 1.02022 1.21072 0.97488 0.98934 0.92365 0.91859 1.21920 0.96390 0.98029 0.90236 1.60638 1.64148 1.05032 1.01881 1.19544 0.92938 0.95173 0.85591 1.21156 1.34881 1.08828 0.90493 0.92022 1.24990 0.95194 0.95230 0.99146 1.69953 1.39128 1.21905 1.22829 0.86543 0.79049 0.80022 0.81668 1.20282 1.21338 1.20123 1.20418 1.01267 0.98500 0.89450 1.21137 0.92308 0.93465 0.95821 1.21239 0.99457 1.09047 1.00530 1.23800 0.95669 0.95885 0.98797 1.77320 1.05911 1.22867 1.06743 1.48482 1.13238 1.32006 1.21925 1.21842 0.78592 1.01793 1.02052 0.93099 0.93182 0.91094 0.96606 0.91586 0.85721 0.99728 0.95433 0.92855 0.89050 0.90960 0.83580 0.80279 0.90657 0.89492 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.75 37.16 0.33 -1.59 16 2 C -0.08 -1.06 2.52 -90.62 -0.23 -1.29 16 3 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 4 C 0.06 1.08 5.07 -3.83 -0.02 1.06 16 5 N -0.69 -14.32 5.94 -115.06 -0.68 -15.01 16 6 C 0.19 5.05 5.44 -4.98 -0.03 5.02 16 7 C -0.51 -14.56 9.32 -34.44 -0.32 -14.88 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 11 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 C -0.06 -0.63 4.98 -27.88 -0.14 -0.77 16 16 C 0.10 1.21 5.79 -82.26 -0.48 0.74 16 17 C -0.27 -3.20 9.00 -40.01 -0.36 -3.56 16 18 C 0.04 0.51 12.03 -17.37 -0.21 0.30 16 19 N -0.31 -4.16 12.58 30.63 0.39 -3.78 16 20 N -0.37 -4.62 4.01 -63.89 -0.26 -4.87 16 21 C 0.10 0.87 11.27 59.84 0.67 1.55 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.64 6.16 -51.93 -0.32 0.32 16 24 H 0.07 1.12 7.75 -51.93 -0.40 0.72 16 25 H 0.02 0.26 8.14 -51.92 -0.42 -0.16 16 26 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.33 6.56 8.72 -39.29 -0.34 6.22 16 28 H -0.02 -0.41 8.14 -51.93 -0.42 -0.84 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.73 6.94 -51.93 -0.36 0.37 16 33 H 0.15 1.49 8.02 -52.49 -0.42 1.07 16 34 H 0.18 1.49 8.06 -52.48 -0.42 1.06 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.63 6.97 -51.93 -0.36 0.27 16 LS Contribution 308.33 15.07 4.65 4.65 Total: -1.00 -31.96 308.33 -7.05 -39.01 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.98 Total: 1.38 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -0.88 Total: -11.93 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.18 Total: -49.73 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.96 -7.05 -39.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380051369.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.943 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds