Wall clock time and date at job start Mon Mar 30 2020 04:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 N 1.46896 * 109.47181 * 65.00049 * 4 2 1 6 6 C 1.46904 * 111.00016 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47132 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99986 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99559 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00174 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99478 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47505 * 59.99901 * 11 9 7 13 13 H 1.48508 * 109.47058 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47376 * 299.99578 * 11 9 7 15 15 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 16 16 C 1.50698 * 109.46984 * 294.99719 * 15 2 1 17 17 C 1.35318 * 126.12653 * 85.02714 * 16 15 2 18 18 C 1.39873 * 107.91781 * 179.97438 * 17 16 15 19 19 N 1.30833 * 108.20490 * 0.02562 * 18 17 16 20 20 N 1.34954 * 126.12674 * 264.71732 * 16 15 2 21 21 C 1.46493 * 126.03809 * 0.03456 * 20 16 15 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 1.09008 * 109.46873 * 184.99985 * 4 2 1 26 26 H 1.08997 * 109.47047 * 304.99674 * 4 2 1 27 27 H 1.00896 * 111.00229 * 56.04575 * 5 4 2 28 28 H 1.08998 * 109.47006 * 300.00352 * 6 5 4 29 29 H 1.09003 * 109.46947 * 60.00060 * 6 5 4 30 30 H 0.97006 * 119.99650 * 180.02562 * 10 9 7 31 31 H 1.08990 * 109.47170 * 54.99895 * 15 2 1 32 32 H 1.09001 * 109.46952 * 174.99972 * 15 2 1 33 33 H 1.07996 * 126.03847 * 359.97438 * 17 16 15 34 34 H 1.08005 * 125.89604 * 180.02562 * 18 17 16 35 35 H 1.09001 * 109.47482 * 90.00022 * 21 20 16 36 36 H 1.08999 * 109.47324 * 210.00053 * 21 20 16 37 37 H 1.09001 * 109.47430 * 330.00176 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6513 0.0375 -2.4456 6 6 2.1256 -0.6264 -3.6672 7 6 1.7085 0.1787 -4.8708 8 1 1.1476 1.0925 -4.7413 9 6 2.0431 -0.2512 -6.1374 10 7 2.7258 -1.3642 -6.2951 11 14 1.5267 0.7472 -7.6294 12 1 2.1181 2.1067 -7.5441 13 1 2.0051 0.0754 -8.8644 14 1 0.0459 0.8530 -7.6659 15 6 2.0400 -0.7213 1.2492 16 6 1.6413 0.0570 2.4765 17 6 0.4575 -0.0293 3.1263 18 6 0.4953 0.8557 4.2088 19 7 1.6597 1.4523 4.2086 20 7 2.4032 0.9605 3.1280 21 6 3.7656 1.3596 2.7665 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 3.1263 -0.7995 -1.2057 26 1 1.6053 -1.7197 -1.2952 27 1 1.9880 0.9873 -2.3967 28 1 3.2125 -0.7037 -3.6401 29 1 1.6919 -1.6245 -3.7301 30 1 2.9614 -1.6664 -7.1863 31 1 1.6054 -1.7198 1.2951 32 1 3.1263 -0.7995 1.2055 33 1 -0.3702 -0.6685 2.8567 34 1 -0.2996 1.0185 4.9217 35 1 3.7265 2.2061 2.0809 36 1 4.3112 1.6453 3.6658 37 1 4.2729 0.5244 2.2837 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380051369.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:23 Heat of formation + Delta-G solvation = 38.757476 kcal Electronic energy + Delta-G solvation = -16417.342085 eV Core-core repulsion = 13808.831617 eV Total energy + Delta-G solvation = -2608.510467 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.17291 -38.32020 -35.81536 -34.28226 -33.89593 -31.23629 -28.79811 -27.89498 -27.44988 -25.69379 -23.37932 -22.03152 -21.46212 -20.42510 -18.52375 -17.52077 -16.79526 -16.41745 -16.33271 -15.85876 -15.32264 -15.22096 -14.67378 -14.37451 -14.10883 -13.66880 -13.57791 -13.37392 -13.21145 -13.12433 -12.85417 -12.71004 -12.52862 -12.12602 -11.93779 -11.76168 -11.64640 -11.45672 -11.21198 -10.64506 -10.16395 -9.38058 -9.06094 -8.21896 -6.32880 0.94907 1.41925 1.45205 1.53187 1.69145 1.94959 2.40744 3.11539 3.46853 3.72059 3.79220 3.92909 4.19248 4.27491 4.36662 4.40975 4.49903 4.62617 4.64906 4.82544 4.86479 4.87384 4.92916 5.00478 5.13507 5.20984 5.30076 5.32611 5.41636 5.58995 5.62617 5.80263 6.03842 6.15107 6.47248 6.74987 6.80432 6.90807 7.38222 8.89407 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.049479 B = 0.003956 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.765959 B = 7075.650630 C = 7171.614296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.065 4.065 3 H 0.060 0.940 4 C 0.065 3.935 5 N -0.686 5.686 6 C 0.208 3.792 7 C -0.537 4.537 8 H 0.063 0.937 9 C 0.002 3.998 10 N -0.934 5.934 11 Si 0.972 3.028 12 H -0.266 1.266 13 H -0.283 1.283 14 H -0.269 1.269 15 C -0.048 4.048 16 C 0.091 3.909 17 C -0.282 4.282 18 C 0.040 3.960 19 N -0.339 5.339 20 N -0.382 5.382 21 C 0.090 3.910 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.046 0.954 25 H 0.021 0.979 26 H 0.061 0.939 27 H 0.332 0.668 28 H -0.039 1.039 29 H 0.000 1.000 30 H 0.265 0.735 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.160 0.840 34 H 0.207 0.793 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.813 2.693 18.469 18.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.085 4.085 3 H 0.078 0.922 4 C -0.064 4.064 5 N -0.316 5.316 6 C 0.080 3.920 7 C -0.575 4.575 8 H 0.082 0.918 9 C -0.196 4.196 10 N -0.574 5.574 11 Si 0.796 3.204 12 H -0.191 1.191 13 H -0.208 1.208 14 H -0.194 1.194 15 C -0.087 4.087 16 C -0.037 4.037 17 C -0.311 4.311 18 C -0.145 4.145 19 N -0.161 5.161 20 N -0.165 5.165 21 C -0.051 4.051 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.039 0.961 26 H 0.080 0.920 27 H 0.149 0.851 28 H -0.021 1.021 29 H 0.018 0.982 30 H 0.074 0.926 31 H 0.121 0.879 32 H 0.104 0.896 33 H 0.177 0.823 34 H 0.223 0.777 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.456 3.196 18.867 19.141 hybrid contribution 0.396 -0.163 -1.309 1.377 sum -0.060 3.033 17.558 17.818 Atomic orbital electron populations 1.21721 0.94166 1.01934 1.01329 1.20893 0.97227 0.98565 0.91788 0.92152 1.21993 0.96804 0.97749 0.89883 1.60505 1.64042 1.05386 1.01650 1.19192 0.91129 0.94028 0.87601 1.21538 1.35097 1.09198 0.91686 0.91831 1.25934 0.94957 0.96287 1.02449 1.70080 1.40084 1.23514 1.23746 0.85407 0.78859 0.78642 0.77515 1.19126 1.20794 1.19388 1.20322 1.02173 0.98459 0.87775 1.21278 0.92653 0.93664 0.96102 1.21527 0.99802 1.09222 1.00522 1.24315 0.95775 0.95235 0.99174 1.77275 1.06924 1.24060 1.07877 1.48766 1.14109 1.31919 1.21679 1.22092 0.77560 1.02665 1.02765 0.92557 0.92077 0.93471 0.96110 0.92012 0.85098 1.02125 0.98184 0.92614 0.87941 0.89590 0.82265 0.77669 0.90363 0.88595 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 8.75 71.98 0.63 -2.88 16 2 C -0.07 -1.65 2.52 -10.79 -0.03 -1.68 16 3 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 4 C 0.07 2.13 5.07 86.30 0.44 2.57 16 5 N -0.69 -28.63 5.94 -517.93 -3.08 -31.71 16 6 C 0.21 11.06 5.44 85.56 0.47 11.53 16 7 C -0.54 -30.56 9.32 25.60 0.24 -30.32 16 8 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 9 C 0.00 0.11 5.46 84.65 0.46 0.57 16 10 N -0.93 -56.25 13.29 21.45 0.28 -55.96 16 11 Si 0.97 44.09 29.54 68.60 2.03 46.11 16 12 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 13 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 14 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 15 C -0.05 -0.97 4.98 29.85 0.15 -0.82 16 16 C 0.09 2.02 5.79 41.40 0.24 2.26 16 17 C -0.28 -6.03 9.00 21.99 0.20 -5.83 16 18 C 0.04 0.86 12.03 85.24 1.02 1.88 16 19 N -0.34 -8.76 12.58 -57.02 -0.72 -9.48 16 20 N -0.38 -8.83 4.01 -356.04 -1.43 -10.26 16 21 C 0.09 1.45 11.27 127.77 1.44 2.89 16 22 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.06 1.46 6.16 -2.39 -0.01 1.45 16 24 H 0.05 1.45 7.75 -2.39 -0.02 1.43 16 25 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.33 13.27 8.72 -89.70 -0.78 12.48 16 28 H -0.04 -2.21 8.14 -2.39 -0.02 -2.23 16 29 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 31 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.09 1.51 6.94 -2.39 -0.02 1.49 16 33 H 0.16 2.86 8.02 -2.91 -0.02 2.84 16 34 H 0.21 2.97 8.06 -2.91 -0.02 2.95 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.10 1.28 6.97 -2.39 -0.02 1.27 16 Total: -1.00 -68.10 308.33 2.60 -65.49 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.26 Total: 15.62 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 5.26 Total: -19.81 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -4.94 Total: -107.41 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -68.10 2.60 -65.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380051369.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.252 kcal (2) G-P(sol) polarization free energy of solvation -68.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds