Wall clock time and date at job start Mon Mar 30 2020 04:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46935 * 2 1 4 4 C 1.50692 * 109.47257 * 240.00042 * 2 1 3 5 5 H 1.07997 * 120.00588 * 239.99864 * 4 2 1 6 6 C 1.37883 * 119.99894 * 59.99604 * 4 2 1 7 7 N 1.31517 * 119.99923 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99899 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47160 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47060 * 120.00166 * 8 6 4 11 11 H 1.48501 * 109.47028 * 240.00052 * 8 6 4 12 12 N 1.46902 * 109.47241 * 119.99697 * 2 1 3 13 13 C 1.46901 * 111.00051 * 274.99945 * 12 2 1 14 14 H 1.08997 * 109.47119 * 35.00595 * 13 12 2 15 15 C 1.53002 * 109.47181 * 274.99959 * 13 12 2 16 16 C 1.53003 * 109.46751 * 154.99944 * 13 12 2 17 17 C 1.52997 * 109.47484 * 295.00208 * 16 13 12 18 18 N 1.46495 * 109.47240 * 179.97438 * 17 16 13 19 19 C 1.34957 * 126.03329 * 125.02128 * 18 17 16 20 20 C 1.35317 * 107.74055 * 179.97438 * 19 18 17 21 21 C 1.39868 * 107.92640 * 0.02562 * 20 19 18 22 22 N 1.30844 * 108.19764 * 359.97438 * 21 20 19 23 23 H 1.09005 * 109.46710 * 299.99528 * 1 2 3 24 24 H 1.09001 * 109.47377 * 59.99876 * 1 2 3 25 25 H 1.08997 * 109.46880 * 180.02562 * 1 2 3 26 26 H 0.97002 * 119.99570 * 179.97438 * 7 6 4 27 27 H 1.00900 * 110.99684 * 38.95942 * 12 2 1 28 28 H 1.08997 * 109.46895 * 300.00134 * 15 13 12 29 29 H 1.09001 * 109.46989 * 60.00132 * 15 13 12 30 30 H 1.08995 * 109.47056 * 180.02562 * 15 13 12 31 31 H 1.09000 * 109.47078 * 174.99706 * 16 13 12 32 32 H 1.09005 * 109.47101 * 55.00398 * 16 13 12 33 33 H 1.09000 * 109.47373 * 59.99678 * 17 16 13 34 34 H 1.09005 * 109.47107 * 300.00187 * 17 16 13 35 35 H 1.07995 * 126.12756 * 0.02562 * 19 18 17 36 36 H 1.08004 * 126.03278 * 180.02562 * 20 19 18 37 37 H 1.07995 * 125.89923 * 180.25722 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6033 8 14 2.3213 -1.1203 -4.0079 9 1 3.1455 -2.2876 -3.6038 10 1 1.1660 -1.5867 -4.8160 11 1 3.1465 -0.1873 -4.8165 12 7 2.0197 -0.6924 1.1995 13 6 2.0825 0.2227 2.3469 14 1 1.2576 0.9330 2.2907 15 6 3.4112 0.9810 2.3223 16 6 1.9771 -0.5796 3.6454 17 6 0.5985 -1.2380 3.7277 18 7 0.4978 -2.0066 4.9707 19 6 -0.4595 -1.8716 5.9124 20 6 -0.1968 -2.7608 6.8979 21 6 0.9609 -3.4629 6.5470 22 7 1.3780 -3.0117 5.3918 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7094 1.1618 -3.4844 27 1 1.4496 -1.4979 1.4100 28 1 4.2360 0.2707 2.3785 29 1 3.4863 1.5526 1.3972 30 1 3.4580 1.6597 3.1739 31 1 2.1126 0.0875 4.4967 32 1 2.7488 -1.3493 3.6606 33 1 0.4630 -1.9051 2.8764 34 1 -0.1732 -0.4683 3.7125 35 1 -1.2873 -1.1786 5.8839 36 1 -0.7784 -2.9032 7.7968 37 1 1.4271 -4.2456 7.1269 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380111548.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:41 Heat of formation + Delta-G solvation = 70.110591 kcal Electronic energy + Delta-G solvation = -16763.569680 eV Core-core repulsion = 14156.418785 eV Total energy + Delta-G solvation = -2607.150894 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.07554 -37.45221 -34.29620 -32.71973 -30.85386 -30.05526 -28.26570 -27.00555 -25.14700 -23.85033 -21.15299 -20.74465 -20.43607 -19.52686 -17.21258 -16.33592 -15.59607 -15.02290 -14.65745 -14.47283 -13.83167 -13.67391 -13.23388 -12.87339 -12.73417 -12.45424 -12.19351 -11.70694 -11.38410 -11.25560 -11.17072 -10.94855 -10.83509 -10.60256 -10.46494 -10.36130 -10.09078 -9.78989 -9.38198 -8.97727 -8.56952 -8.36663 -7.26060 -5.99327 -4.02007 1.94299 2.55877 2.85918 3.31547 3.39453 3.45344 4.43952 4.50709 4.80831 4.97045 5.05283 5.17230 5.30199 5.32553 5.40317 5.57275 5.72831 5.83523 5.93197 5.98588 6.07505 6.27491 6.35436 6.54939 6.63255 6.67317 6.76752 6.80812 7.04172 7.07266 7.35743 7.70899 7.74689 7.89239 8.26867 8.51975 8.61157 9.06060 9.63633 11.07818 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.037311 B = 0.004857 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.258937 B = 5763.903783 C = 5910.178565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.210 3.790 3 H 0.036 0.964 4 C -0.493 4.493 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.680 5.680 13 C 0.086 3.914 14 H 0.036 0.964 15 C -0.134 4.134 16 C -0.128 4.128 17 C 0.127 3.873 18 N -0.363 5.363 19 C 0.050 3.950 20 C -0.282 4.282 21 C 0.035 3.965 22 N -0.289 5.289 23 H 0.003 0.997 24 H 0.089 0.911 25 H 0.026 0.974 26 H 0.258 0.742 27 H 0.323 0.677 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.171 0.829 36 H 0.143 0.857 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.884 -2.514 15.786 16.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.103 3.897 3 H 0.054 0.946 4 C -0.532 4.532 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.211 1.211 12 N -0.312 5.312 13 C -0.025 4.025 14 H 0.054 0.946 15 C -0.192 4.192 16 C -0.167 4.167 17 C 0.007 3.993 18 N -0.145 5.145 19 C -0.097 4.097 20 C -0.312 4.312 21 C -0.151 4.151 22 N -0.111 5.111 23 H 0.022 0.978 24 H 0.108 0.892 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.142 0.858 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.188 0.812 36 H 0.161 0.839 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -1.395 -2.331 14.419 14.673 hybrid contribution -1.493 -0.180 -0.026 1.504 sum -2.888 -2.510 14.393 14.893 Atomic orbital electron populations 1.22455 1.00909 0.99061 1.00457 1.19218 0.89367 0.94571 0.86583 0.94634 1.21207 1.30009 1.12385 0.89593 0.91896 1.24949 0.95357 0.95206 0.99046 1.69890 1.37502 1.23255 1.23204 0.86470 0.78514 0.79708 0.82886 1.19719 1.21252 1.21149 1.60896 1.58284 1.08729 1.03311 1.21389 0.97367 0.94195 0.89535 0.94580 1.21727 0.97223 0.99351 1.00866 1.22045 0.95806 1.00312 0.98490 1.21952 1.00167 0.94361 0.82865 1.48887 1.19705 1.28624 1.17276 1.22600 0.95339 1.01240 0.90507 1.21464 1.02696 1.03877 1.03154 1.23870 0.96272 1.00527 0.94393 1.77405 1.15334 1.03955 1.14386 0.97785 0.89199 0.95442 0.93167 0.85850 0.92378 0.92054 0.93899 0.91649 0.89687 0.89199 0.88851 0.81219 0.83876 0.80329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.93 8.92 37.16 0.33 -3.60 16 2 C 0.21 5.14 2.38 -68.87 -0.16 4.98 16 3 H 0.04 0.96 7.11 -51.93 -0.37 0.59 16 4 C -0.49 -13.55 8.84 -34.44 -0.30 -13.86 16 5 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -25.50 11.32 55.43 0.63 -24.87 16 8 Si 0.90 21.53 29.54 -169.99 -5.02 16.50 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 N -0.68 -13.96 6.04 -100.95 -0.61 -14.57 16 13 C 0.09 1.46 2.46 -67.71 -0.17 1.29 16 14 H 0.04 0.63 7.11 -51.93 -0.37 0.26 16 15 C -0.13 -2.22 9.40 37.16 0.35 -1.87 16 16 C -0.13 -1.84 4.99 -26.73 -0.13 -1.97 16 17 C 0.13 1.70 6.34 -4.05 -0.03 1.67 16 18 N -0.36 -4.96 3.68 -61.37 -0.23 -5.18 16 19 C 0.05 0.56 11.45 -17.22 -0.20 0.37 16 20 C -0.28 -3.06 10.80 -40.01 -0.43 -3.49 16 21 C 0.04 0.42 12.03 -17.36 -0.21 0.22 16 22 N -0.29 -4.34 12.42 30.62 0.38 -3.96 16 23 H 0.00 0.07 7.43 -51.93 -0.39 -0.32 16 24 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 25 H 0.03 0.61 8.13 -51.93 -0.42 0.18 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 27 H 0.32 6.33 6.21 -39.29 -0.24 6.08 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.14 7.43 -51.93 -0.39 0.75 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.09 1.30 6.43 -51.93 -0.33 0.97 16 34 H 0.09 1.07 8.07 -51.93 -0.42 0.65 16 35 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 37 H 0.18 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 304.08 15.07 4.58 4.58 Total: -1.00 -30.10 304.08 -7.06 -37.16 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.75 Total: 5.18 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -1.05 Total: -14.85 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.17 Total: -48.58 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.10 -7.06 -37.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380111548.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.267 kcal (2) G-P(sol) polarization free energy of solvation -30.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds