Wall clock time and date at job start Mon Mar 30 2020 04:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46935 * 2 1 4 4 C 1.50692 * 109.47257 * 240.00042 * 2 1 3 5 5 H 1.07997 * 120.00588 * 239.99864 * 4 2 1 6 6 C 1.37883 * 119.99894 * 59.99604 * 4 2 1 7 7 N 1.31517 * 119.99923 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99899 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47160 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47060 * 120.00166 * 8 6 4 11 11 H 1.48501 * 109.47028 * 240.00052 * 8 6 4 12 12 N 1.46902 * 109.47241 * 119.99697 * 2 1 3 13 13 C 1.46901 * 111.00051 * 274.99945 * 12 2 1 14 14 H 1.08997 * 109.47119 * 35.00595 * 13 12 2 15 15 C 1.53002 * 109.47181 * 274.99959 * 13 12 2 16 16 C 1.53003 * 109.46751 * 154.99944 * 13 12 2 17 17 C 1.52997 * 109.47484 * 295.00208 * 16 13 12 18 18 N 1.46495 * 109.47240 * 179.97438 * 17 16 13 19 19 C 1.34957 * 126.03329 * 125.02128 * 18 17 16 20 20 C 1.35317 * 107.74055 * 179.97438 * 19 18 17 21 21 C 1.39868 * 107.92640 * 0.02562 * 20 19 18 22 22 N 1.30844 * 108.19764 * 359.97438 * 21 20 19 23 23 H 1.09005 * 109.46710 * 299.99528 * 1 2 3 24 24 H 1.09001 * 109.47377 * 59.99876 * 1 2 3 25 25 H 1.08997 * 109.46880 * 180.02562 * 1 2 3 26 26 H 0.97002 * 119.99570 * 179.97438 * 7 6 4 27 27 H 1.00900 * 110.99684 * 38.95942 * 12 2 1 28 28 H 1.08997 * 109.46895 * 300.00134 * 15 13 12 29 29 H 1.09001 * 109.46989 * 60.00132 * 15 13 12 30 30 H 1.08995 * 109.47056 * 180.02562 * 15 13 12 31 31 H 1.09000 * 109.47078 * 174.99706 * 16 13 12 32 32 H 1.09005 * 109.47101 * 55.00398 * 16 13 12 33 33 H 1.09000 * 109.47373 * 59.99678 * 17 16 13 34 34 H 1.09005 * 109.47107 * 300.00187 * 17 16 13 35 35 H 1.07995 * 126.12756 * 0.02562 * 19 18 17 36 36 H 1.08004 * 126.03278 * 180.02562 * 20 19 18 37 37 H 1.07995 * 125.89923 * 180.25722 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6033 8 14 2.3213 -1.1203 -4.0079 9 1 3.1455 -2.2876 -3.6038 10 1 1.1660 -1.5867 -4.8160 11 1 3.1465 -0.1873 -4.8165 12 7 2.0197 -0.6924 1.1995 13 6 2.0825 0.2227 2.3469 14 1 1.2576 0.9330 2.2907 15 6 3.4112 0.9810 2.3223 16 6 1.9771 -0.5796 3.6454 17 6 0.5985 -1.2380 3.7277 18 7 0.4978 -2.0066 4.9707 19 6 -0.4595 -1.8716 5.9124 20 6 -0.1968 -2.7608 6.8979 21 6 0.9609 -3.4629 6.5470 22 7 1.3780 -3.0117 5.3918 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7094 1.1618 -3.4844 27 1 1.4496 -1.4979 1.4100 28 1 4.2360 0.2707 2.3785 29 1 3.4863 1.5526 1.3972 30 1 3.4580 1.6597 3.1739 31 1 2.1126 0.0875 4.4967 32 1 2.7488 -1.3493 3.6606 33 1 0.4630 -1.9051 2.8764 34 1 -0.1732 -0.4683 3.7125 35 1 -1.2873 -1.1786 5.8839 36 1 -0.7784 -2.9032 7.7968 37 1 1.4271 -4.2456 7.1269 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380111548.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:41 Heat of formation + Delta-G solvation = 50.957556 kcal Electronic energy + Delta-G solvation = -16764.400218 eV Core-core repulsion = 14156.418785 eV Total energy + Delta-G solvation = -2607.981432 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.97367 -38.95339 -35.89082 -34.20388 -32.51259 -30.99673 -29.36951 -28.72954 -27.21673 -24.97470 -22.49882 -21.94150 -21.58155 -20.94059 -18.43139 -18.03524 -17.05702 -16.47456 -16.33637 -15.46357 -15.27519 -14.70843 -14.58592 -14.36377 -14.00732 -13.71491 -13.52761 -13.32302 -12.98445 -12.94660 -12.78469 -12.43043 -12.36441 -12.19774 -12.15207 -11.84820 -11.56188 -11.44290 -10.97791 -10.47750 -10.34628 -9.46436 -8.93425 -8.09543 -6.19525 1.05770 1.40462 1.42921 1.54823 1.64316 2.01858 2.44037 3.19082 3.51291 3.61055 3.87842 3.99424 4.14345 4.19773 4.32276 4.46941 4.63135 4.71579 4.76744 4.87033 4.87756 4.93752 4.99185 5.02442 5.08214 5.19936 5.27964 5.40899 5.48896 5.71496 5.81561 5.86817 6.18331 6.30761 6.68074 6.84862 6.86456 6.96552 7.50595 8.95883 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.037311 B = 0.004857 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.258937 B = 5763.903783 C = 5910.178565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.217 3.783 3 H 0.006 0.994 4 C -0.514 4.514 5 H 0.050 0.950 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.956 3.044 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.282 1.282 12 N -0.687 5.687 13 C 0.088 3.912 14 H 0.038 0.962 15 C -0.131 4.131 16 C -0.110 4.110 17 C 0.131 3.869 18 N -0.378 5.378 19 C 0.047 3.953 20 C -0.285 4.285 21 C 0.032 3.968 22 N -0.341 5.341 23 H 0.031 0.969 24 H 0.060 0.940 25 H 0.029 0.971 26 H 0.260 0.740 27 H 0.329 0.671 28 H 0.052 0.948 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.117 0.883 35 H 0.203 0.797 36 H 0.171 0.829 37 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.651 -2.756 17.264 17.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.108 3.892 3 H 0.024 0.976 4 C -0.553 4.553 5 H 0.068 0.932 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.782 3.218 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.208 1.208 12 N -0.319 5.319 13 C -0.023 4.023 14 H 0.056 0.944 15 C -0.189 4.189 16 C -0.149 4.149 17 C 0.009 3.991 18 N -0.160 5.160 19 C -0.099 4.099 20 C -0.314 4.314 21 C -0.153 4.153 22 N -0.163 5.163 23 H 0.050 0.950 24 H 0.079 0.921 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.148 0.852 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.135 0.865 35 H 0.220 0.780 36 H 0.188 0.812 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.162 -2.580 15.920 16.271 hybrid contribution -1.255 -0.112 -0.386 1.318 sum -3.416 -2.692 15.533 16.131 Atomic orbital electron populations 1.22243 0.99878 0.99132 1.00318 1.18944 0.90012 0.92835 0.87369 0.97571 1.21501 1.30161 1.12294 0.91316 0.93191 1.25654 0.95536 0.95881 1.01682 1.70004 1.38139 1.24185 1.23821 0.85539 0.78082 0.78611 0.79558 1.19644 1.20576 1.20756 1.60745 1.58195 1.09404 1.03600 1.21434 0.97505 0.93931 0.89427 0.94405 1.21710 0.96925 0.99455 1.00820 1.21811 0.96204 0.99596 0.97248 1.21853 0.99967 0.94483 0.82754 1.48884 1.20465 1.28921 1.17738 1.23256 0.95353 1.01548 0.89702 1.21866 1.02350 1.03230 1.03978 1.24440 0.96590 1.00619 0.93690 1.77358 1.17192 1.05595 1.16142 0.95005 0.92113 0.95144 0.93063 0.85231 0.92903 0.94719 0.90795 0.90050 0.91588 0.90896 0.86542 0.78005 0.81194 0.77931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.22 8.92 71.98 0.64 -6.58 16 2 C 0.22 10.76 2.38 44.17 0.11 10.86 16 3 H 0.01 0.35 7.11 -2.39 -0.02 0.33 16 4 C -0.51 -28.70 8.84 25.60 0.23 -28.47 16 5 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 6 C 0.01 0.59 5.30 84.66 0.45 1.03 16 7 N -0.92 -52.83 11.32 21.45 0.24 -52.58 16 8 Si 0.96 44.42 29.54 68.60 2.03 46.44 16 9 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 12 N -0.69 -28.33 6.04 -473.31 -2.86 -31.19 16 13 C 0.09 2.90 2.46 44.92 0.11 3.01 16 14 H 0.04 1.26 7.11 -2.39 -0.02 1.25 16 15 C -0.13 -4.29 9.40 71.98 0.68 -3.62 16 16 C -0.11 -3.02 4.99 30.59 0.15 -2.87 16 17 C 0.13 3.28 6.34 86.38 0.55 3.83 16 18 N -0.38 -9.67 3.68 -348.07 -1.28 -10.95 16 19 C 0.05 0.93 11.45 83.54 0.96 1.89 16 20 C -0.29 -5.36 10.80 21.99 0.24 -5.13 16 21 C 0.03 0.71 12.03 85.23 1.03 1.74 16 22 N -0.34 -9.91 12.42 -57.02 -0.71 -10.61 16 23 H 0.03 1.25 7.43 -2.38 -0.02 1.23 16 24 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 25 H 0.03 1.34 8.13 -2.39 -0.02 1.32 16 26 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 27 H 0.33 12.88 6.21 -89.69 -0.56 12.33 16 28 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.03 1.30 7.43 -2.39 -0.02 1.28 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 33 H 0.07 2.06 6.43 -2.39 -0.02 2.05 16 34 H 0.12 2.34 8.07 -2.38 -0.02 2.32 16 35 H 0.20 2.41 8.06 -2.91 -0.02 2.38 16 36 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 37 H 0.20 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -65.25 304.08 3.04 -62.21 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.48 Total: 20.98 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: 5.13 Total: -24.30 kcal Atomic # 7 Polarization: -100.73 SS G_CDS: -4.60 Total: -105.34 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -65.25 3.04 -62.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380111548.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.171 kcal (2) G-P(sol) polarization free energy of solvation -65.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds