Wall clock time and date at job start Mon Mar 30 2020 04:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46985 * 2 1 4 4 C 1.50697 * 109.46803 * 240.00073 * 2 1 3 5 5 H 1.08004 * 120.00418 * 239.99779 * 4 2 1 6 6 C 1.37877 * 120.00105 * 60.00147 * 4 2 1 7 7 N 1.31522 * 120.00075 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00267 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46760 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.47199 * 119.99776 * 8 6 4 11 11 H 1.48495 * 109.47018 * 240.00152 * 8 6 4 12 12 N 1.46902 * 109.47187 * 120.00447 * 2 1 3 13 13 C 1.46901 * 110.99964 * 270.82011 * 12 2 1 14 14 H 1.09004 * 109.46635 * 2.49382 * 13 12 2 15 15 C 1.53000 * 109.47363 * 122.49378 * 13 12 2 16 16 C 1.53002 * 109.46965 * 242.49490 * 13 12 2 17 17 C 1.52996 * 109.47144 * 64.99847 * 16 13 12 18 18 N 1.46501 * 109.47078 * 179.97438 * 17 16 13 19 19 C 1.34948 * 126.03432 * 124.71077 * 18 17 16 20 20 C 1.35313 * 107.74492 * 179.83969 * 19 18 17 21 21 C 1.39868 * 107.92154 * 0.42780 * 20 19 18 22 22 N 1.30839 * 108.20063 * 359.73646 * 21 20 19 23 23 H 1.08998 * 109.47626 * 172.61977 * 1 2 3 24 24 H 1.09004 * 109.46859 * 292.61286 * 1 2 3 25 25 H 1.08995 * 109.47318 * 52.61316 * 1 2 3 26 26 H 0.96991 * 120.00246 * 179.97438 * 7 6 4 27 27 H 1.00891 * 110.99878 * 146.86489 * 12 2 1 28 28 H 1.09004 * 109.46851 * 308.09563 * 15 13 12 29 29 H 1.08993 * 109.47275 * 68.09307 * 15 13 12 30 30 H 1.09004 * 109.47239 * 188.10123 * 15 13 12 31 31 H 1.09000 * 109.46913 * 184.99904 * 16 13 12 32 32 H 1.08997 * 109.46677 * 304.99509 * 16 13 12 33 33 H 1.09000 * 109.47262 * 299.99843 * 17 16 13 34 34 H 1.08999 * 109.47274 * 59.99827 * 17 16 13 35 35 H 1.08000 * 126.12920 * 0.02562 * 19 18 17 36 36 H 1.08000 * 126.04234 * 180.16291 * 20 19 18 37 37 H 1.07999 * 125.90628 * 179.71720 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 3.1472 -2.2863 -3.6039 10 1 1.1676 -1.5865 -4.8165 11 1 3.1471 -0.1857 -4.8161 12 7 2.0197 -0.6926 1.1994 13 6 2.1767 0.2435 2.3206 14 1 1.8489 1.2366 2.0133 15 6 1.3291 -0.2303 3.5030 16 6 3.6479 0.2982 2.7371 17 6 4.4791 0.8894 1.5968 18 7 5.8878 0.9423 1.9959 19 6 6.9237 0.3950 1.3262 20 6 8.0533 0.6686 2.0190 21 6 7.6944 1.3999 3.1560 22 7 6.3965 1.5645 3.1432 23 1 -0.3634 -1.0191 -0.1320 24 1 -0.3633 0.3952 0.9487 25 1 -0.3634 0.6240 -0.8165 26 1 0.7086 1.1614 -3.4843 27 1 2.8839 -1.1774 1.0094 28 1 0.3066 -0.4072 3.1693 29 1 1.7463 -1.1549 3.9017 30 1 1.3305 0.5339 4.2804 31 1 3.7514 0.9232 3.6241 32 1 4.0002 -0.7091 2.9593 33 1 4.3757 0.2643 0.7098 34 1 4.1267 1.8966 1.3746 35 1 6.8625 -0.1592 0.4012 36 1 9.0547 0.3709 1.7450 37 1 8.3716 1.7654 3.9138 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380111557.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:45 Heat of formation + Delta-G solvation = 67.259389 kcal Electronic energy + Delta-G solvation = -16974.884458 eV Core-core repulsion = 14367.609927 eV Total energy + Delta-G solvation = -2607.274532 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.94912 -37.42717 -34.14079 -32.72318 -30.81131 -29.94001 -28.18099 -27.24250 -25.14056 -23.70749 -20.96712 -20.64716 -20.13319 -19.84743 -17.02358 -16.49365 -15.37696 -15.05736 -14.44268 -14.25527 -14.11739 -13.47497 -13.04447 -12.95642 -12.65807 -12.54320 -12.20532 -11.60097 -11.54152 -11.23807 -11.08469 -10.94396 -10.74895 -10.56173 -10.42429 -10.24350 -10.16513 -9.85222 -9.27164 -8.85288 -8.56316 -8.44810 -7.34706 -6.10677 -4.17699 2.07421 2.70446 2.96795 3.22333 3.31352 3.33945 4.32944 4.67267 5.00147 5.04074 5.17013 5.22026 5.23529 5.40614 5.59277 5.69828 5.83793 5.87474 6.02288 6.04696 6.12729 6.22836 6.36985 6.49126 6.69012 6.78234 6.85026 7.09610 7.18059 7.21246 7.47159 7.71253 7.83307 7.85924 8.17353 8.32972 8.59649 8.94575 9.49277 10.95695 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.020179 B = 0.007118 C = 0.005562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.244266 B = 3932.956442 C = 5032.506092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.211 3.789 3 H 0.003 0.997 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.285 1.285 12 N -0.686 5.686 13 C 0.084 3.916 14 H 0.062 0.938 15 C -0.132 4.132 16 C -0.141 4.141 17 C 0.127 3.873 18 N -0.361 5.361 19 C 0.058 3.942 20 C -0.286 4.286 21 C 0.035 3.965 22 N -0.299 5.299 23 H 0.031 0.969 24 H 0.006 0.994 25 H 0.074 0.926 26 H 0.261 0.739 27 H 0.330 0.670 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.173 0.827 36 H 0.143 0.857 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.799 -0.074 8.277 12.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.104 3.896 3 H 0.021 0.979 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.211 1.211 12 N -0.318 5.318 13 C -0.027 4.027 14 H 0.080 0.920 15 C -0.190 4.190 16 C -0.180 4.180 17 C 0.006 3.994 18 N -0.143 5.143 19 C -0.090 4.090 20 C -0.315 4.315 21 C -0.151 4.151 22 N -0.121 5.121 23 H 0.051 0.949 24 H 0.025 0.975 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.148 0.852 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.126 0.874 34 H 0.102 0.898 35 H 0.191 0.809 36 H 0.161 0.839 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 6.912 0.338 8.873 11.253 hybrid contribution 1.807 -0.326 -1.718 2.515 sum 8.719 0.012 7.155 11.279 Atomic orbital electron populations 1.21694 0.97870 1.00174 0.98194 1.19232 0.92765 0.92129 0.85516 0.97935 1.21328 1.31818 1.12575 0.90570 0.92277 1.24918 0.94935 0.94918 0.99036 1.69919 1.36370 1.22784 1.23457 0.86520 0.78705 0.79632 0.83023 1.19755 1.20912 1.21093 1.60778 1.34494 1.29082 1.07455 1.21592 0.91369 0.96363 0.93401 0.92004 1.21772 1.00665 1.00027 0.96554 1.22376 0.96116 1.01525 0.98018 1.21989 0.74939 1.03531 0.98910 1.48910 1.07303 1.40667 1.17380 1.22689 0.87748 0.99312 0.99204 1.21449 0.99079 1.11650 0.99358 1.23811 0.92876 0.99532 0.98841 1.77293 1.11104 1.19369 1.04377 0.94933 0.97478 0.90763 0.92919 0.85188 0.92057 0.93234 0.93808 0.90732 0.91369 0.87432 0.89775 0.80942 0.83915 0.80488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.92 9.15 37.16 0.34 -2.59 16 2 C 0.21 5.01 2.49 -68.86 -0.17 4.84 16 3 H 0.00 0.08 7.40 -51.93 -0.38 -0.31 16 4 C -0.52 -13.56 8.58 -34.44 -0.30 -13.86 16 5 H 0.06 1.51 7.56 -52.48 -0.40 1.11 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.55 11.41 55.43 0.63 -23.92 16 8 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.69 -13.62 5.98 -100.95 -0.60 -14.22 16 13 C 0.08 1.42 2.70 -67.71 -0.18 1.24 16 14 H 0.06 1.13 7.18 -51.93 -0.37 0.76 16 15 C -0.13 -2.02 9.53 37.16 0.35 -1.66 16 16 C -0.14 -2.13 4.68 -26.73 -0.13 -2.26 16 17 C 0.13 1.98 6.37 -4.04 -0.03 1.96 16 18 N -0.36 -5.59 3.68 -61.37 -0.23 -5.81 16 19 C 0.06 0.79 11.45 -17.22 -0.20 0.59 16 20 C -0.29 -3.57 10.80 -40.01 -0.43 -4.00 16 21 C 0.03 0.46 12.03 -17.36 -0.21 0.25 16 22 N -0.30 -4.75 12.42 30.62 0.38 -4.37 16 23 H 0.03 0.79 8.13 -51.93 -0.42 0.37 16 24 H 0.01 0.14 8.12 -51.93 -0.42 -0.28 16 25 H 0.07 1.95 6.30 -51.93 -0.33 1.62 16 26 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 27 H 0.33 6.36 6.62 -39.30 -0.26 6.10 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 33 H 0.11 1.75 7.08 -51.93 -0.37 1.38 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.17 1.94 8.06 -52.49 -0.42 1.52 16 36 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.18 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 307.10 15.07 4.63 4.63 Total: -1.00 -28.56 307.10 -7.14 -35.71 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.89 Total: 6.36 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -1.04 Total: -13.88 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.18 Total: -48.33 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.56 -7.14 -35.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380111557.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.965 kcal (2) G-P(sol) polarization free energy of solvation -28.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds