Wall clock time and date at job start Mon Mar 30 2020 04:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46985 * 2 1 4 4 C 1.50697 * 109.46803 * 240.00073 * 2 1 3 5 5 H 1.08004 * 120.00418 * 239.99779 * 4 2 1 6 6 C 1.37877 * 120.00105 * 60.00147 * 4 2 1 7 7 N 1.31522 * 120.00075 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00267 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46760 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.47199 * 119.99776 * 8 6 4 11 11 H 1.48495 * 109.47018 * 240.00152 * 8 6 4 12 12 N 1.46902 * 109.47187 * 120.00447 * 2 1 3 13 13 C 1.46901 * 110.99964 * 270.82011 * 12 2 1 14 14 H 1.09004 * 109.46635 * 2.49382 * 13 12 2 15 15 C 1.53000 * 109.47363 * 122.49378 * 13 12 2 16 16 C 1.53002 * 109.46965 * 242.49490 * 13 12 2 17 17 C 1.52996 * 109.47144 * 64.99847 * 16 13 12 18 18 N 1.46501 * 109.47078 * 179.97438 * 17 16 13 19 19 C 1.34948 * 126.03432 * 124.71077 * 18 17 16 20 20 C 1.35313 * 107.74492 * 179.83969 * 19 18 17 21 21 C 1.39868 * 107.92154 * 0.42780 * 20 19 18 22 22 N 1.30839 * 108.20063 * 359.73646 * 21 20 19 23 23 H 1.08998 * 109.47626 * 172.61977 * 1 2 3 24 24 H 1.09004 * 109.46859 * 292.61286 * 1 2 3 25 25 H 1.08995 * 109.47318 * 52.61316 * 1 2 3 26 26 H 0.96991 * 120.00246 * 179.97438 * 7 6 4 27 27 H 1.00891 * 110.99878 * 146.86489 * 12 2 1 28 28 H 1.09004 * 109.46851 * 308.09563 * 15 13 12 29 29 H 1.08993 * 109.47275 * 68.09307 * 15 13 12 30 30 H 1.09004 * 109.47239 * 188.10123 * 15 13 12 31 31 H 1.09000 * 109.46913 * 184.99904 * 16 13 12 32 32 H 1.08997 * 109.46677 * 304.99509 * 16 13 12 33 33 H 1.09000 * 109.47262 * 299.99843 * 17 16 13 34 34 H 1.08999 * 109.47274 * 59.99827 * 17 16 13 35 35 H 1.08000 * 126.12920 * 0.02562 * 19 18 17 36 36 H 1.08000 * 126.04234 * 180.16291 * 20 19 18 37 37 H 1.07999 * 125.90628 * 179.71720 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 3.1472 -2.2863 -3.6039 10 1 1.1676 -1.5865 -4.8165 11 1 3.1471 -0.1857 -4.8161 12 7 2.0197 -0.6926 1.1994 13 6 2.1767 0.2435 2.3206 14 1 1.8489 1.2366 2.0133 15 6 1.3291 -0.2303 3.5030 16 6 3.6479 0.2982 2.7371 17 6 4.4791 0.8894 1.5968 18 7 5.8878 0.9423 1.9959 19 6 6.9237 0.3950 1.3262 20 6 8.0533 0.6686 2.0190 21 6 7.6944 1.3999 3.1560 22 7 6.3965 1.5645 3.1432 23 1 -0.3634 -1.0191 -0.1320 24 1 -0.3633 0.3952 0.9487 25 1 -0.3634 0.6240 -0.8165 26 1 0.7086 1.1614 -3.4843 27 1 2.8839 -1.1774 1.0094 28 1 0.3066 -0.4072 3.1693 29 1 1.7463 -1.1549 3.9017 30 1 1.3305 0.5339 4.2804 31 1 3.7514 0.9232 3.6241 32 1 4.0002 -0.7091 2.9593 33 1 4.3757 0.2643 0.7098 34 1 4.1267 1.8966 1.3746 35 1 6.8625 -0.1592 0.4012 36 1 9.0547 0.3709 1.7450 37 1 8.3716 1.7654 3.9138 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380111557.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:45 Heat of formation + Delta-G solvation = 49.999016 kcal Electronic energy + Delta-G solvation = -16975.632924 eV Core-core repulsion = 14367.609927 eV Total energy + Delta-G solvation = -2608.022997 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.00744 -38.94022 -35.82222 -34.19326 -32.48509 -31.02839 -29.35371 -28.97007 -27.16334 -24.91595 -22.28220 -21.93791 -21.49812 -21.32755 -18.46353 -18.06192 -17.00686 -16.48668 -15.97593 -15.62300 -15.35776 -14.83705 -14.66731 -14.20614 -14.08468 -13.62133 -13.50360 -13.37524 -13.11752 -12.84166 -12.73941 -12.47568 -12.37811 -12.20554 -12.03715 -11.85932 -11.57538 -11.49975 -10.80578 -10.57815 -10.38414 -9.50247 -9.02012 -8.12812 -6.26127 1.01335 1.40495 1.44076 1.53938 1.59857 1.98981 2.41270 3.16750 3.52054 3.59832 3.82876 3.97524 4.10530 4.23558 4.37883 4.46452 4.58279 4.75407 4.83433 4.89389 4.91605 4.98510 5.02216 5.07935 5.17912 5.19024 5.28851 5.42051 5.54949 5.71782 5.80939 5.89226 6.11449 6.21314 6.50642 6.80409 6.81200 7.04899 7.44925 8.93062 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.020179 B = 0.007118 C = 0.005562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.244266 B = 3932.956442 C = 5032.506092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.219 3.781 3 H -0.022 1.022 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.956 3.044 9 H -0.264 1.264 10 H -0.285 1.285 11 H -0.282 1.282 12 N -0.683 5.683 13 C 0.085 3.915 14 H 0.045 0.955 15 C -0.126 4.126 16 C -0.123 4.123 17 C 0.135 3.865 18 N -0.378 5.378 19 C 0.042 3.958 20 C -0.282 4.282 21 C 0.037 3.963 22 N -0.337 5.337 23 H 0.023 0.977 24 H 0.022 0.978 25 H 0.049 0.951 26 H 0.261 0.739 27 H 0.334 0.666 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.191 0.809 36 H 0.172 0.828 37 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.395 -0.934 8.898 13.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.110 3.890 3 H -0.004 1.004 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.782 3.218 9 H -0.188 1.188 10 H -0.211 1.211 11 H -0.208 1.208 12 N -0.315 5.315 13 C -0.026 4.026 14 H 0.063 0.937 15 C -0.184 4.184 16 C -0.162 4.162 17 C 0.013 3.987 18 N -0.160 5.160 19 C -0.104 4.104 20 C -0.311 4.311 21 C -0.149 4.149 22 N -0.159 5.159 23 H 0.042 0.958 24 H 0.041 0.959 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.152 0.848 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.086 0.914 35 H 0.208 0.792 36 H 0.189 0.811 37 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 8.523 -0.533 9.513 12.784 hybrid contribution 1.376 -0.032 -1.854 2.309 sum 9.900 -0.564 7.659 12.529 Atomic orbital electron populations 1.21541 0.98267 0.99055 0.98062 1.18991 0.92384 0.90922 0.86662 1.00447 1.21640 1.31561 1.12547 0.91496 0.92087 1.25679 0.95191 0.95580 1.01912 1.70046 1.37525 1.24110 1.23993 0.85538 0.78072 0.78739 0.79468 1.18787 1.21073 1.20832 1.60715 1.34838 1.29308 1.06615 1.21622 0.93079 0.94932 0.92959 0.93687 1.21711 0.99425 1.01151 0.96126 1.22166 0.94526 1.01700 0.97797 1.21748 0.75877 1.02346 0.98686 1.48884 1.07222 1.41857 1.18017 1.23196 0.87786 0.99452 0.99973 1.21845 0.99975 1.10614 0.98640 1.24468 0.92414 0.98454 0.99520 1.77255 1.12688 1.20841 1.05151 0.95753 0.95859 0.93188 0.92992 0.84787 0.93277 0.92274 0.91705 0.90354 0.90928 0.88448 0.91371 0.79250 0.81098 0.77243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.43 9.15 71.98 0.66 -4.77 16 2 C 0.22 10.53 2.49 44.17 0.11 10.64 16 3 H -0.02 -1.16 7.40 -2.39 -0.02 -1.18 16 4 C -0.53 -27.70 8.58 25.60 0.22 -27.48 16 5 H 0.06 3.08 7.56 -2.91 -0.02 3.06 16 6 C 0.02 0.84 5.30 84.65 0.45 1.29 16 7 N -0.92 -51.58 11.41 21.45 0.24 -51.33 16 8 Si 0.96 42.02 29.54 68.60 2.03 44.05 16 9 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 12 N -0.68 -26.93 5.98 -473.30 -2.83 -29.76 16 13 C 0.08 2.83 2.70 44.92 0.12 2.95 16 14 H 0.04 1.67 7.18 -2.38 -0.02 1.65 16 15 C -0.13 -3.65 9.53 71.98 0.69 -2.97 16 16 C -0.12 -3.63 4.68 30.59 0.14 -3.48 16 17 C 0.13 4.24 6.37 86.38 0.55 4.79 16 18 N -0.38 -11.44 3.68 -348.07 -1.28 -12.72 16 19 C 0.04 1.09 11.45 83.54 0.96 2.04 16 20 C -0.28 -6.32 10.80 21.99 0.24 -6.08 16 21 C 0.04 0.88 12.03 85.24 1.02 1.91 16 22 N -0.34 -10.32 12.42 -57.02 -0.71 -11.03 16 23 H 0.02 1.18 8.13 -2.39 -0.02 1.16 16 24 H 0.02 1.01 8.12 -2.39 -0.02 0.99 16 25 H 0.05 2.68 6.30 -2.39 -0.02 2.67 16 26 H 0.26 14.00 8.31 -92.72 -0.77 13.23 16 27 H 0.33 12.70 6.62 -89.70 -0.59 12.11 16 28 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 30 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.07 2.10 8.12 -2.39 -0.02 2.08 16 33 H 0.10 3.22 7.08 -2.39 -0.02 3.20 16 34 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.19 3.98 8.06 -2.91 -0.02 3.96 16 36 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 37 H 0.21 3.33 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -60.52 307.10 3.05 -57.47 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.44 Total: 24.48 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 5.16 Total: -21.15 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -4.57 Total: -104.84 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -60.52 3.05 -57.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380111557.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.467 kcal (2) G-P(sol) polarization free energy of solvation -60.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds