Wall clock time and date at job start Mon Mar 30 2020 04:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47269 * 2 1 4 4 C 1.50697 * 109.46973 * 120.00183 * 2 1 3 5 5 H 1.08003 * 120.00150 * 120.00351 * 4 2 1 6 6 C 1.37877 * 119.99923 * 299.99141 * 4 2 1 7 7 N 1.31514 * 119.99928 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99907 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47109 * 60.00982 * 8 6 4 10 10 H 1.48502 * 109.47039 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47385 * 300.00776 * 8 6 4 12 12 N 1.46901 * 109.47198 * 240.00428 * 2 1 3 13 13 C 1.46898 * 111.00340 * 84.99853 * 12 2 1 14 14 H 1.09001 * 109.46770 * 324.99792 * 13 12 2 15 15 C 1.52996 * 109.46966 * 85.00277 * 13 12 2 16 16 C 1.53003 * 109.47063 * 205.00414 * 13 12 2 17 17 C 1.53000 * 109.47427 * 64.99752 * 16 13 12 18 18 N 1.46495 * 109.47183 * 179.97438 * 17 16 13 19 19 C 1.34957 * 126.03329 * 124.97448 * 18 17 16 20 20 C 1.35317 * 107.74055 * 179.97438 * 19 18 17 21 21 C 1.39868 * 107.92640 * 0.02562 * 20 19 18 22 22 N 1.30844 * 108.19764 * 359.97438 * 21 20 19 23 23 H 1.08997 * 109.46976 * 300.00248 * 1 2 3 24 24 H 1.09009 * 109.47152 * 59.99793 * 1 2 3 25 25 H 1.09000 * 109.47269 * 179.97438 * 1 2 3 26 26 H 0.97002 * 119.99436 * 179.97438 * 7 6 4 27 27 H 1.00908 * 110.99622 * 321.04186 * 12 2 1 28 28 H 1.08996 * 109.47170 * 60.00509 * 15 13 12 29 29 H 1.09001 * 109.46502 * 180.02562 * 15 13 12 30 30 H 1.09001 * 109.47074 * 299.99730 * 15 13 12 31 31 H 1.09001 * 109.47197 * 304.99827 * 16 13 12 32 32 H 1.08999 * 109.47263 * 185.00263 * 16 13 12 33 33 H 1.09001 * 109.46871 * 59.99875 * 17 16 13 34 34 H 1.08999 * 109.47317 * 300.00478 * 17 16 13 35 35 H 1.07995 * 126.12756 * 0.02562 * 19 18 17 36 36 H 1.08004 * 126.03278 * 180.02562 * 20 19 18 37 37 H 1.07995 * 125.89923 * 180.25722 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9430 0.8298 2.6033 8 14 2.3214 -1.1204 4.0079 9 1 3.8064 -1.1210 4.0082 10 1 1.8261 -0.4205 5.2204 11 1 1.8258 -2.5203 4.0077 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 1 1.2576 0.9330 -2.2907 15 6 3.4111 0.9809 -2.3224 16 6 1.9770 -0.5796 -3.6454 17 6 0.5983 -1.2379 -3.7277 18 7 0.4971 -2.0056 -4.9713 19 6 0.1794 -3.3132 -5.0734 20 6 0.1924 -3.6393 -6.3867 21 6 0.5301 -2.4920 -7.1118 22 7 0.7128 -1.5120 -6.2644 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 0.7084 1.1610 3.4844 27 1 1.4495 -1.4979 -1.4101 28 1 4.2359 0.2706 -2.3787 29 1 3.4574 1.6602 -3.1736 30 1 3.4862 1.5525 -1.3973 31 1 2.7486 -1.3493 -3.6607 32 1 2.1125 0.0875 -4.4967 33 1 -0.1733 -0.4682 -3.7124 34 1 0.4628 -1.9050 -2.8764 35 1 -0.0458 -3.9797 -4.2540 36 1 -0.0205 -4.6136 -6.8015 37 1 0.6197 -2.4254 -8.1860 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380111558.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:49 Heat of formation + Delta-G solvation = 69.497322 kcal Electronic energy + Delta-G solvation = -16765.940858 eV Core-core repulsion = 14158.763371 eV Total energy + Delta-G solvation = -2607.177487 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.07262 -37.46909 -34.30148 -32.72483 -30.87933 -30.04183 -28.26554 -27.02568 -25.16167 -23.85103 -21.14856 -20.74058 -20.38529 -19.62884 -17.20201 -16.31409 -15.57959 -15.00145 -14.68945 -14.42198 -14.16866 -13.42748 -13.14409 -12.98538 -12.69120 -12.49800 -12.19684 -11.72441 -11.36552 -11.28955 -11.21301 -10.92974 -10.83743 -10.57234 -10.52543 -10.39860 -10.09364 -9.79365 -9.38957 -9.01514 -8.57091 -8.37854 -7.30082 -6.00658 -4.04009 1.94569 2.56002 2.85847 3.32676 3.36968 3.40163 4.41764 4.51835 4.85755 4.95471 5.06718 5.13106 5.30956 5.31449 5.46873 5.54805 5.74368 5.81549 5.96126 6.01495 6.07815 6.23749 6.36965 6.54310 6.63092 6.67063 6.75381 6.79972 7.04506 7.05881 7.34037 7.69360 7.73616 7.86057 8.24889 8.48614 8.58237 9.02950 9.61530 11.06330 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.037802 B = 0.004908 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.522671 B = 5703.509249 C = 5998.620147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.211 3.789 3 H 0.036 0.964 4 C -0.496 4.496 5 H 0.061 0.939 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.680 5.680 13 C 0.085 3.915 14 H 0.038 0.962 15 C -0.133 4.133 16 C -0.127 4.127 17 C 0.128 3.872 18 N -0.363 5.363 19 C 0.055 3.945 20 C -0.283 4.283 21 C 0.036 3.964 22 N -0.296 5.296 23 H 0.089 0.911 24 H 0.004 0.996 25 H 0.026 0.974 26 H 0.260 0.740 27 H 0.320 0.680 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.173 0.827 36 H 0.144 0.856 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.638 -5.428 -14.009 15.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.103 3.897 3 H 0.054 0.946 4 C -0.535 4.535 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.312 5.312 13 C -0.026 4.026 14 H 0.056 0.944 15 C -0.191 4.191 16 C -0.166 4.166 17 C 0.007 3.993 18 N -0.145 5.145 19 C -0.092 4.092 20 C -0.313 4.313 21 C -0.149 4.149 22 N -0.118 5.118 23 H 0.108 0.892 24 H 0.023 0.977 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.138 0.862 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.190 0.810 36 H 0.162 0.838 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.745 -3.902 -13.412 13.988 hybrid contribution -0.984 -1.268 0.639 1.728 sum -1.729 -5.171 -12.772 13.887 Atomic orbital electron populations 1.22456 1.00855 0.99036 1.00560 1.19210 0.89397 0.94600 0.86473 0.94602 1.21112 1.30275 1.12456 0.89617 0.92048 1.24946 0.95327 0.95189 0.99027 1.69869 1.37236 1.23179 1.23459 0.86578 0.79208 0.79583 0.82095 1.20293 1.21473 1.20407 1.60931 1.58075 1.08762 1.03442 1.21401 0.97507 0.94293 0.89377 0.94373 1.21720 0.97076 0.99360 1.00974 1.22039 0.95023 1.00466 0.99053 1.21950 0.99984 0.96119 0.81232 1.48868 1.52080 1.07514 1.06040 1.22656 1.00700 0.86580 0.99267 1.21469 1.16629 1.00744 0.92426 1.23844 1.00138 0.91160 0.99790 1.77324 1.23575 1.23374 0.87554 0.89188 0.97699 0.95467 0.93011 0.86189 0.92490 0.93744 0.92069 0.90802 0.90561 0.89873 0.88262 0.80988 0.83827 0.80375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.91 8.92 37.16 0.33 -3.58 16 2 C 0.21 5.09 2.38 -68.87 -0.16 4.93 16 3 H 0.04 0.96 7.11 -51.93 -0.37 0.59 16 4 C -0.50 -13.41 8.84 -34.44 -0.30 -13.71 16 5 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 6 C 0.06 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.31 11.32 55.43 0.63 -24.69 16 8 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.68 -13.58 6.04 -100.96 -0.61 -14.19 16 13 C 0.09 1.45 2.46 -67.71 -0.17 1.28 16 14 H 0.04 0.68 7.11 -51.93 -0.37 0.31 16 15 C -0.13 -2.22 9.40 37.16 0.35 -1.87 16 16 C -0.13 -1.83 4.99 -26.73 -0.13 -1.97 16 17 C 0.13 1.71 6.34 -4.04 -0.03 1.69 16 18 N -0.36 -4.97 3.68 -61.37 -0.23 -5.20 16 19 C 0.06 0.64 11.45 -17.22 -0.20 0.45 16 20 C -0.28 -3.12 10.80 -40.01 -0.43 -3.55 16 21 C 0.04 0.43 12.03 -17.36 -0.21 0.22 16 22 N -0.30 -4.32 12.42 30.62 0.38 -3.94 16 23 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 24 H 0.00 0.08 7.43 -51.92 -0.39 -0.30 16 25 H 0.03 0.59 8.13 -51.93 -0.42 0.17 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.32 5.90 6.21 -39.29 -0.24 5.66 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 1.14 7.43 -51.93 -0.39 0.75 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.10 1.25 6.35 -51.93 -0.33 0.92 16 35 H 0.17 1.51 8.06 -52.49 -0.42 1.08 16 36 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 37 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 304.08 15.07 4.58 4.58 Total: -1.00 -29.63 304.08 -7.06 -36.69 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -5.75 Total: 5.20 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -1.05 Total: -14.69 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 0.17 Total: -48.02 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.63 -7.06 -36.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380111558.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.189 kcal (2) G-P(sol) polarization free energy of solvation -29.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds