Wall clock time and date at job start Mon Mar 30 2020 04:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47554 * 2 1 4 4 C 1.53004 * 109.47343 * 239.99688 * 2 1 3 5 5 C 1.52997 * 109.47239 * 175.00263 * 4 2 1 6 6 N 1.46504 * 109.47294 * 180.02562 * 5 4 2 7 7 C 1.34943 * 126.04044 * 125.01961 * 6 5 4 8 8 C 1.35314 * 107.74889 * 180.02562 * 7 6 5 9 9 C 1.39861 * 107.91869 * 0.02562 * 8 7 6 10 10 N 1.30843 * 108.20640 * 0.02562 * 9 8 7 11 11 N 1.46903 * 109.47187 * 120.00153 * 2 1 3 12 12 C 1.46897 * 110.99648 * 273.76091 * 11 2 1 13 13 H 1.09000 * 109.47625 * 347.05589 * 12 11 2 14 14 C 1.53004 * 109.47541 * 107.05606 * 12 11 2 15 15 C 1.50698 * 109.47139 * 227.05841 * 12 11 2 16 16 H 1.08004 * 119.99857 * 359.97438 * 15 12 11 17 17 C 1.37882 * 120.00274 * 180.02562 * 15 12 11 18 18 N 1.31511 * 120.00096 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 120.00031 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46949 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47181 * 119.99734 * 19 17 15 22 22 H 1.48501 * 109.47028 * 240.00277 * 19 17 15 23 23 H 1.09001 * 109.47460 * 182.74646 * 1 2 3 24 24 H 1.09000 * 109.47535 * 302.74858 * 1 2 3 25 25 H 1.09010 * 109.46884 * 62.75014 * 1 2 3 26 26 H 1.09003 * 109.47089 * 55.00304 * 4 2 1 27 27 H 1.08995 * 109.46905 * 295.00322 * 4 2 1 28 28 H 1.09000 * 109.47384 * 60.00406 * 5 4 2 29 29 H 1.09004 * 109.47127 * 299.99684 * 5 4 2 30 30 H 1.08008 * 126.12310 * 0.02562 * 7 6 5 31 31 H 1.08002 * 126.04084 * 180.02562 * 8 7 6 32 32 H 1.08004 * 125.89809 * 180.26334 * 9 8 7 33 33 H 1.00892 * 111.00327 * 149.80643 * 11 2 1 34 34 H 1.09000 * 109.47087 * 306.51585 * 14 12 11 35 35 H 1.08997 * 109.46738 * 66.51570 * 14 12 11 36 36 H 1.08998 * 109.47153 * 186.51741 * 14 12 11 37 37 H 0.96991 * 120.00235 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 7 4.0532 -1.3036 -2.5101 7 6 4.8326 -0.7683 -3.4729 8 6 5.0600 -1.7273 -4.4000 9 6 4.3965 -2.8882 -3.9901 10 7 3.7918 -2.6352 -2.8577 11 7 2.0196 -0.6925 1.1994 12 6 2.1103 0.2295 2.3394 13 1 2.0154 1.2559 1.9851 14 6 0.9854 -0.0736 3.3313 15 6 3.4424 0.0549 3.0220 16 1 4.1508 -0.6689 2.6467 17 6 3.7567 0.8185 4.1262 18 7 2.8940 1.6995 4.5836 19 14 5.4077 0.6015 4.9727 20 1 6.1910 -0.4456 4.2688 21 1 6.1538 1.8851 4.9388 22 1 5.1906 0.1921 6.3835 23 1 -0.3634 -1.0265 0.0492 24 1 -0.3634 0.5559 0.8643 25 1 -0.3633 0.4706 -0.9137 26 1 1.6054 -0.2618 -2.1370 27 1 1.7516 -1.7715 -1.2055 28 1 3.9994 -1.0730 -0.4259 29 1 3.8532 0.4369 -1.3573 30 1 5.2076 0.2443 -3.4988 31 1 5.6498 -1.6159 -5.2980 32 1 4.3881 -3.8318 -4.5154 33 1 2.9077 -1.1375 1.0228 34 1 0.0282 -0.0607 2.8102 35 1 1.1456 -1.0573 3.7727 36 1 0.9812 0.6812 4.1177 37 1 3.1152 2.2369 5.3601 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380111559.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:53 Heat of formation + Delta-G solvation = 69.046986 kcal Electronic energy + Delta-G solvation = -16799.439380 eV Core-core repulsion = 14192.242365 eV Total energy + Delta-G solvation = -2607.197016 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.02431 -37.34879 -34.26702 -32.71682 -30.77226 -29.99209 -28.20974 -27.32459 -25.05071 -23.76861 -21.07481 -20.61858 -20.20320 -19.62864 -17.21584 -16.57011 -15.50172 -14.83572 -14.65863 -14.44326 -13.82675 -13.60557 -13.37370 -12.94031 -12.66142 -12.33568 -12.12222 -11.60181 -11.47494 -11.16577 -11.12940 -10.93493 -10.84667 -10.63528 -10.47102 -10.15806 -10.05126 -9.78509 -9.32995 -8.84930 -8.53081 -8.47875 -7.32530 -6.07161 -4.15038 1.99660 2.61847 2.90369 3.24030 3.32700 3.36048 4.35656 4.57256 4.86787 5.02185 5.09808 5.19434 5.26938 5.35829 5.47073 5.62312 5.77695 5.88785 5.96756 6.02562 6.08112 6.27075 6.36423 6.54899 6.71812 6.74502 6.90736 7.09741 7.18372 7.32253 7.49654 7.73164 7.79579 7.95369 8.16934 8.34099 8.64157 8.98322 9.51722 10.98286 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.023995 B = 0.005981 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.644155 B = 4680.176067 C = 5548.357225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.088 3.912 3 H 0.040 0.960 4 C -0.128 4.128 5 C 0.126 3.874 6 N -0.362 5.362 7 C 0.051 3.949 8 C -0.283 4.283 9 C 0.034 3.966 10 N -0.290 5.290 11 N -0.687 5.687 12 C 0.210 3.790 13 H 0.012 0.988 14 C -0.120 4.120 15 C -0.531 4.531 16 H 0.057 0.943 17 C 0.065 3.935 18 N -0.886 5.886 19 Si 0.892 3.108 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.283 1.283 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.042 0.958 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.171 0.829 31 H 0.143 0.857 32 H 0.179 0.821 33 H 0.330 0.670 34 H 0.010 0.990 35 H 0.029 0.971 36 H 0.073 0.927 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.427 -2.612 -14.447 14.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.024 4.024 3 H 0.058 0.942 4 C -0.166 4.166 5 C 0.006 3.994 6 N -0.144 5.144 7 C -0.096 4.096 8 C -0.313 4.313 9 C -0.151 4.151 10 N -0.112 5.112 11 N -0.321 5.321 12 C 0.102 3.898 13 H 0.030 0.970 14 C -0.178 4.178 15 C -0.569 4.569 16 H 0.075 0.925 17 C -0.137 4.137 18 N -0.525 5.525 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.209 1.209 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.061 0.939 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.188 0.812 31 H 0.161 0.839 32 H 0.196 0.804 33 H 0.150 0.850 34 H 0.029 0.971 35 H 0.048 0.952 36 H 0.091 0.909 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.002 -3.096 -13.046 13.408 hybrid contribution 2.286 0.871 -0.332 2.468 sum 2.284 -2.225 -13.377 13.752 Atomic orbital electron populations 1.21779 0.95144 1.01872 1.00464 1.21497 0.95798 0.95655 0.89414 0.94221 1.22045 0.92560 1.03330 0.98708 1.21975 0.96505 0.96381 0.84567 1.48905 1.38196 1.08604 1.18657 1.22606 0.96494 1.00136 0.90375 1.21450 1.11927 0.93904 1.04012 1.23854 0.97339 0.99624 0.94311 1.77390 1.23565 0.94119 1.16156 1.60866 1.33551 1.33487 1.04154 1.19208 0.94369 0.89432 0.86759 0.96985 1.21716 0.95407 1.00727 0.99988 1.21528 1.00736 1.21239 1.13445 0.92501 1.24912 0.96978 0.94990 0.96823 1.69915 1.34665 1.23389 1.24486 0.86538 0.83949 0.77874 0.79628 1.19824 1.21063 1.20880 0.92463 0.92252 0.93866 0.91722 0.89855 0.88922 0.88672 0.81199 0.83919 0.80389 0.85041 0.97123 0.95226 0.90854 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 9.34 37.15 0.35 -1.83 16 2 C 0.09 1.51 2.59 -67.71 -0.18 1.33 16 3 H 0.04 0.72 7.34 -51.93 -0.38 0.34 16 4 C -0.13 -1.88 4.98 -26.73 -0.13 -2.02 16 5 C 0.13 1.79 6.34 -4.04 -0.03 1.77 16 6 N -0.36 -5.17 3.68 -61.36 -0.23 -5.40 16 7 C 0.05 0.61 11.45 -17.23 -0.20 0.41 16 8 C -0.28 -3.21 10.80 -40.02 -0.43 -3.65 16 9 C 0.03 0.43 12.02 -17.37 -0.21 0.22 16 10 N -0.29 -4.49 12.42 30.62 0.38 -4.11 16 11 N -0.69 -14.19 6.23 -100.95 -0.63 -14.82 16 12 C 0.21 5.16 2.67 -68.86 -0.18 4.98 16 13 H 0.01 0.33 7.15 -51.93 -0.37 -0.04 16 14 C -0.12 -2.97 9.20 37.16 0.34 -2.63 16 15 C -0.53 -14.18 8.60 -34.44 -0.30 -14.48 16 16 H 0.06 1.50 7.36 -52.48 -0.39 1.11 16 17 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 18 N -0.89 -24.95 11.39 55.43 0.63 -24.32 16 19 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 24 H 0.06 1.05 6.97 -51.93 -0.36 0.68 16 25 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.09 1.45 6.43 -51.93 -0.33 1.12 16 29 H 0.10 1.19 8.07 -51.93 -0.42 0.77 16 30 H 0.17 1.47 8.06 -52.48 -0.42 1.05 16 31 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.18 1.63 8.06 -52.48 -0.42 1.20 16 33 H 0.33 6.75 5.57 -39.30 -0.22 6.53 16 34 H 0.01 0.22 6.87 -51.93 -0.36 -0.13 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.96 6.27 -51.93 -0.33 1.64 16 37 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 303.08 15.07 4.57 4.57 Total: -1.00 -29.66 303.08 -7.03 -36.69 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -5.67 Total: 5.64 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -1.06 Total: -14.21 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: 0.16 Total: -48.64 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.66 -7.03 -36.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380111559.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.736 kcal (2) G-P(sol) polarization free energy of solvation -29.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds