Wall clock time and date at job start Mon Mar 30 2020 04:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47554 * 2 1 4 4 C 1.53004 * 109.47343 * 239.99688 * 2 1 3 5 5 C 1.52997 * 109.47239 * 175.00263 * 4 2 1 6 6 N 1.46504 * 109.47294 * 180.02562 * 5 4 2 7 7 C 1.34943 * 126.04044 * 125.01961 * 6 5 4 8 8 C 1.35314 * 107.74889 * 180.02562 * 7 6 5 9 9 C 1.39861 * 107.91869 * 0.02562 * 8 7 6 10 10 N 1.30843 * 108.20640 * 0.02562 * 9 8 7 11 11 N 1.46903 * 109.47187 * 120.00153 * 2 1 3 12 12 C 1.46897 * 110.99648 * 273.76091 * 11 2 1 13 13 H 1.09000 * 109.47625 * 347.05589 * 12 11 2 14 14 C 1.53004 * 109.47541 * 107.05606 * 12 11 2 15 15 C 1.50698 * 109.47139 * 227.05841 * 12 11 2 16 16 H 1.08004 * 119.99857 * 359.97438 * 15 12 11 17 17 C 1.37882 * 120.00274 * 180.02562 * 15 12 11 18 18 N 1.31511 * 120.00096 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 120.00031 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46949 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47181 * 119.99734 * 19 17 15 22 22 H 1.48501 * 109.47028 * 240.00277 * 19 17 15 23 23 H 1.09001 * 109.47460 * 182.74646 * 1 2 3 24 24 H 1.09000 * 109.47535 * 302.74858 * 1 2 3 25 25 H 1.09010 * 109.46884 * 62.75014 * 1 2 3 26 26 H 1.09003 * 109.47089 * 55.00304 * 4 2 1 27 27 H 1.08995 * 109.46905 * 295.00322 * 4 2 1 28 28 H 1.09000 * 109.47384 * 60.00406 * 5 4 2 29 29 H 1.09004 * 109.47127 * 299.99684 * 5 4 2 30 30 H 1.08008 * 126.12310 * 0.02562 * 7 6 5 31 31 H 1.08002 * 126.04084 * 180.02562 * 8 7 6 32 32 H 1.08004 * 125.89809 * 180.26334 * 9 8 7 33 33 H 1.00892 * 111.00327 * 149.80643 * 11 2 1 34 34 H 1.09000 * 109.47087 * 306.51585 * 14 12 11 35 35 H 1.08997 * 109.46738 * 66.51570 * 14 12 11 36 36 H 1.08998 * 109.47153 * 186.51741 * 14 12 11 37 37 H 0.96991 * 120.00235 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 7 4.0532 -1.3036 -2.5101 7 6 4.8326 -0.7683 -3.4729 8 6 5.0600 -1.7273 -4.4000 9 6 4.3965 -2.8882 -3.9901 10 7 3.7918 -2.6352 -2.8577 11 7 2.0196 -0.6925 1.1994 12 6 2.1103 0.2295 2.3394 13 1 2.0154 1.2559 1.9851 14 6 0.9854 -0.0736 3.3313 15 6 3.4424 0.0549 3.0220 16 1 4.1508 -0.6689 2.6467 17 6 3.7567 0.8185 4.1262 18 7 2.8940 1.6995 4.5836 19 14 5.4077 0.6015 4.9727 20 1 6.1910 -0.4456 4.2688 21 1 6.1538 1.8851 4.9388 22 1 5.1906 0.1921 6.3835 23 1 -0.3634 -1.0265 0.0492 24 1 -0.3634 0.5559 0.8643 25 1 -0.3633 0.4706 -0.9137 26 1 1.6054 -0.2618 -2.1370 27 1 1.7516 -1.7715 -1.2055 28 1 3.9994 -1.0730 -0.4259 29 1 3.8532 0.4369 -1.3573 30 1 5.2076 0.2443 -3.4988 31 1 5.6498 -1.6159 -5.2980 32 1 4.3881 -3.8318 -4.5154 33 1 2.9077 -1.1375 1.0228 34 1 0.0282 -0.0607 2.8102 35 1 1.1456 -1.0573 3.7727 36 1 0.9812 0.6812 4.1177 37 1 3.1152 2.2369 5.3601 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380111559.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:53 Heat of formation + Delta-G solvation = 50.435116 kcal Electronic energy + Delta-G solvation = -16800.246452 eV Core-core repulsion = 14192.242365 eV Total energy + Delta-G solvation = -2608.004087 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.97661 -38.87177 -35.90895 -34.20941 -32.43243 -30.98907 -29.38532 -29.05888 -27.12725 -24.92034 -22.22005 -21.95905 -21.59893 -21.02490 -18.70691 -18.00538 -17.00906 -16.40654 -16.20997 -15.57426 -15.29203 -14.84541 -14.69147 -14.21443 -14.00159 -13.57261 -13.48527 -13.34929 -13.02824 -12.91066 -12.84994 -12.46642 -12.35607 -12.21644 -12.01985 -11.85235 -11.53075 -11.42913 -10.85979 -10.56127 -10.35169 -9.47035 -9.04959 -8.13693 -6.28889 1.05468 1.38009 1.41241 1.51353 1.63682 2.01663 2.39261 3.13846 3.51692 3.61244 3.88534 3.99640 4.14041 4.20199 4.34248 4.50206 4.63347 4.72024 4.83998 4.89842 4.93699 4.97242 5.00653 5.12661 5.19601 5.24614 5.31636 5.43414 5.52192 5.68320 5.82096 5.95947 6.16735 6.17751 6.44782 6.79839 6.84688 7.03449 7.41992 8.90775 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.023995 B = 0.005981 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.644155 B = 4680.176067 C = 5548.357225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.087 3.913 3 H 0.032 0.968 4 C -0.109 4.109 5 C 0.130 3.870 6 N -0.377 5.377 7 C 0.046 3.954 8 C -0.284 4.284 9 C 0.033 3.967 10 N -0.340 5.340 11 N -0.687 5.687 12 C 0.217 3.783 13 H -0.013 1.013 14 C -0.109 4.109 15 C -0.546 4.546 16 H 0.056 0.944 17 C 0.018 3.982 18 N -0.914 5.914 19 Si 0.956 3.044 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.282 1.282 23 H 0.055 0.945 24 H 0.040 0.960 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.201 0.799 31 H 0.171 0.829 32 H 0.206 0.794 33 H 0.331 0.669 34 H 0.027 0.973 35 H 0.019 0.981 36 H 0.050 0.950 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.392 -2.695 -16.066 16.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.024 4.024 3 H 0.050 0.950 4 C -0.148 4.148 5 C 0.009 3.991 6 N -0.160 5.160 7 C -0.101 4.101 8 C -0.313 4.313 9 C -0.153 4.153 10 N -0.162 5.162 11 N -0.320 5.320 12 C 0.109 3.891 13 H 0.005 0.995 14 C -0.168 4.168 15 C -0.584 4.584 16 H 0.074 0.926 17 C -0.182 4.182 18 N -0.553 5.553 19 Si 0.781 3.219 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.208 1.208 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.130 0.870 30 H 0.218 0.782 31 H 0.189 0.811 32 H 0.222 0.778 33 H 0.150 0.850 34 H 0.046 0.954 35 H 0.038 0.962 36 H 0.069 0.931 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.962 -3.188 -14.688 15.061 hybrid contribution 1.981 0.880 0.079 2.169 sum 2.943 -2.309 -14.609 15.080 Atomic orbital electron populations 1.21744 0.94162 1.01822 1.01128 1.21559 0.96519 0.95195 0.89086 0.94957 1.21820 0.93194 1.02006 0.97775 1.21835 0.95823 0.97117 0.84313 1.48886 1.39344 1.08599 1.19135 1.23248 0.95539 1.01644 0.89621 1.21855 1.11590 0.93148 1.04730 1.24449 0.96221 1.01116 0.93489 1.77344 1.25713 0.95182 1.17965 1.60789 1.33587 1.32907 1.04737 1.18981 0.93530 0.88771 0.87866 0.99500 1.21567 0.96511 0.99184 0.99521 1.21836 1.01631 1.21154 1.13793 0.92621 1.25669 1.00245 0.94746 0.97505 1.70032 1.36306 1.24071 1.24904 0.85547 0.79997 0.77963 0.78347 1.19341 1.20448 1.20772 0.92549 0.94110 0.90952 0.90049 0.91317 0.91083 0.86976 0.78228 0.81144 0.77775 0.84982 0.95425 0.96159 0.93145 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 9.34 71.98 0.67 -3.42 16 2 C 0.09 2.95 2.59 44.91 0.12 3.07 16 3 H 0.03 1.16 7.34 -2.39 -0.02 1.15 16 4 C -0.11 -3.12 4.98 30.59 0.15 -2.96 16 5 C 0.13 3.59 6.34 86.38 0.55 4.14 16 6 N -0.38 -10.30 3.68 -348.05 -1.28 -11.58 16 7 C 0.05 0.97 11.45 83.54 0.96 1.93 16 8 C -0.28 -5.66 10.80 21.99 0.24 -5.42 16 9 C 0.03 0.75 12.02 85.23 1.02 1.78 16 10 N -0.34 -10.20 12.42 -57.02 -0.71 -10.91 16 11 N -0.69 -28.55 6.23 -473.31 -2.95 -31.50 16 12 C 0.22 10.85 2.67 44.17 0.12 10.96 16 13 H -0.01 -0.69 7.15 -2.39 -0.02 -0.71 16 14 C -0.11 -5.49 9.20 71.98 0.66 -4.83 16 15 C -0.55 -29.40 8.60 25.60 0.22 -29.18 16 16 H 0.06 2.95 7.36 -2.91 -0.02 2.93 16 17 C 0.02 0.99 5.30 84.66 0.45 1.44 16 18 N -0.91 -52.05 11.39 21.45 0.24 -51.80 16 19 Si 0.96 43.03 29.54 68.60 2.03 45.06 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.04 1.41 6.97 -2.39 -0.02 1.39 16 25 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 26 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.07 2.25 6.43 -2.39 -0.02 2.23 16 29 H 0.11 2.64 8.07 -2.38 -0.02 2.62 16 30 H 0.20 2.81 8.06 -2.91 -0.02 2.78 16 31 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 32 H 0.21 3.26 8.06 -2.91 -0.02 3.24 16 33 H 0.33 13.68 5.57 -89.70 -0.50 13.18 16 34 H 0.03 1.24 6.87 -2.39 -0.02 1.22 16 35 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.05 2.75 6.27 -2.39 -0.01 2.73 16 37 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -63.55 303.08 3.04 -60.51 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.54 Total: 22.72 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: 5.16 Total: -22.50 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -4.69 Total: -105.79 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -63.55 3.04 -60.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380111559.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.945 kcal (2) G-P(sol) polarization free energy of solvation -63.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds