Wall clock time and date at job start Mon Mar 30 2020 04:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47511 * 2 1 4 4 C 1.50698 * 109.47343 * 120.00392 * 2 1 3 5 5 H 1.08006 * 120.00278 * 119.99928 * 4 2 1 6 6 C 1.37881 * 119.99826 * 300.00200 * 4 2 1 7 7 N 1.31519 * 119.99678 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99951 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47331 * 59.99754 * 8 6 4 10 10 H 1.48507 * 109.47136 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47222 * 299.99254 * 8 6 4 12 12 N 1.46911 * 109.47257 * 240.00130 * 2 1 3 13 13 C 1.46902 * 110.99614 * 84.99924 * 12 2 1 14 14 H 1.08996 * 109.47149 * 324.99463 * 13 12 2 15 15 C 1.52997 * 109.47094 * 85.00357 * 13 12 2 16 16 C 1.53006 * 109.46626 * 205.00042 * 13 12 2 17 17 C 1.50703 * 109.47148 * 65.00251 * 16 13 12 18 18 C 1.39867 * 126.03744 * 90.01913 * 17 16 13 19 19 N 1.30841 * 108.20201 * 179.97438 * 18 17 16 20 20 N 1.40093 * 108.20225 * 359.97438 * 19 18 17 21 21 C 1.46497 * 126.03424 * 179.97438 * 20 19 18 22 22 C 1.34942 * 107.92404 * 359.76108 * 20 19 18 23 23 H 1.09005 * 109.46824 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47175 * 299.99750 * 1 2 3 25 25 H 1.09002 * 109.47293 * 60.00141 * 1 2 3 26 26 H 0.96999 * 119.99401 * 180.02562 * 7 6 4 27 27 H 1.00897 * 110.99488 * 321.04540 * 12 2 1 28 28 H 1.09002 * 109.47153 * 299.99508 * 15 13 12 29 29 H 1.09001 * 109.46832 * 179.97438 * 15 13 12 30 30 H 1.09004 * 109.47261 * 59.99681 * 15 13 12 31 31 H 1.08996 * 109.46945 * 184.99785 * 16 13 12 32 32 H 1.09000 * 109.47314 * 304.99907 * 16 13 12 33 33 H 1.07997 * 125.90203 * 0.02562 * 18 17 16 34 34 H 1.09006 * 109.47259 * 89.98001 * 21 20 19 35 35 H 1.08998 * 109.47176 * 209.97787 * 21 20 19 36 36 H 1.08997 * 109.47248 * 329.98013 * 21 20 19 37 37 H 1.07997 * 126.12641 * 180.23490 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 3.8075 -1.1191 4.0076 10 1 1.8279 -0.4194 5.2204 11 1 1.8280 -2.5200 4.0081 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2227 -2.3469 14 1 1.2576 0.9329 -2.2907 15 6 3.4111 0.9809 -2.3224 16 6 1.9770 -0.5796 -3.6455 17 6 0.6190 -1.2281 -3.7265 18 6 -0.5266 -0.6693 -4.3023 19 7 -1.5056 -1.5288 -4.1814 20 7 -1.0129 -2.6637 -3.5243 21 6 -1.7800 -3.8654 -3.1871 22 6 0.2943 -2.4564 -3.2611 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.7095 1.1616 3.4844 27 1 1.4496 -1.4979 -1.4101 28 1 3.4862 1.5525 -1.3973 29 1 3.4578 1.6597 -3.1740 30 1 4.2360 0.2706 -2.3786 31 1 2.1124 0.0875 -4.4967 32 1 2.7487 -1.3493 -3.6607 33 1 -0.5917 0.3033 -4.7673 34 1 -1.7186 -4.5783 -4.0093 35 1 -1.3699 -4.3166 -2.2836 36 1 -2.8223 -3.5953 -3.0174 37 1 0.9611 -3.1461 -2.7650 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380151848.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:28 Heat of formation + Delta-G solvation = 69.397035 kcal Electronic energy + Delta-G solvation = -17240.248469 eV Core-core repulsion = 14633.066632 eV Total energy + Delta-G solvation = -2607.181836 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.01268 -36.89660 -33.83418 -32.84214 -31.11937 -29.93356 -27.45242 -26.82929 -25.09921 -24.89061 -20.97283 -20.92103 -19.88303 -19.33573 -16.59342 -16.20083 -15.33282 -15.02032 -14.60022 -14.28614 -13.85999 -13.44208 -12.96390 -12.64889 -12.57526 -12.38045 -12.10221 -11.80877 -11.40666 -11.23418 -11.14513 -10.85146 -10.77774 -10.51242 -10.38511 -10.15441 -9.97149 -9.69786 -9.22517 -8.89604 -8.30299 -8.07782 -7.09274 -5.92593 -3.95605 2.08790 2.70194 3.02566 3.35981 3.40168 3.43182 4.47770 4.64763 5.05733 5.14257 5.23509 5.32196 5.38573 5.40182 5.51800 5.67047 5.77149 6.00529 6.08192 6.17257 6.35020 6.39755 6.58025 6.71046 6.80261 6.87804 6.94756 6.96536 7.19406 7.23941 7.51280 7.82023 7.88026 7.96987 8.38585 8.68306 8.75327 9.11829 9.69406 11.14384 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.024313 B = 0.007072 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.365478 B = 3958.423410 C = 4583.273981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.213 3.787 3 H 0.033 0.967 4 C -0.493 4.493 5 H 0.060 0.940 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.279 1.279 12 N -0.679 5.679 13 C 0.086 3.914 14 H 0.034 0.966 15 C -0.135 4.135 16 C -0.042 4.042 17 C -0.229 4.229 18 C 0.051 3.949 19 N -0.304 5.304 20 N -0.378 5.378 21 C 0.103 3.897 22 C 0.058 3.942 23 H 0.020 0.980 24 H 0.085 0.915 25 H 0.003 0.997 26 H 0.259 0.741 27 H 0.323 0.677 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.178 0.822 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.596 -5.770 -12.348 13.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.105 3.895 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.078 0.922 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.205 1.205 12 N -0.311 5.311 13 C -0.025 4.025 14 H 0.052 0.948 15 C -0.193 4.193 16 C -0.081 4.081 17 C -0.240 4.240 18 C -0.135 4.135 19 N -0.125 5.125 20 N -0.160 5.160 21 C -0.038 4.038 22 C -0.087 4.087 23 H 0.039 0.961 24 H 0.104 0.896 25 H 0.022 0.978 26 H 0.069 0.931 27 H 0.141 0.859 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.195 0.805 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.335 -5.953 -12.227 13.798 hybrid contribution 0.038 -0.187 0.992 1.010 sum -2.297 -6.140 -11.235 13.007 Atomic orbital electron populations 1.22355 1.00961 0.98609 1.00171 1.19146 0.89277 0.94421 0.86652 0.94915 1.21150 1.29994 1.12325 0.89763 0.92161 1.24955 0.95436 0.95242 0.98955 1.69887 1.37405 1.23211 1.23275 0.86609 0.79195 0.79542 0.82271 1.20300 1.21515 1.20522 1.60936 1.57755 1.09025 1.03354 1.21420 0.96458 0.94306 0.90323 0.94814 1.21755 0.97499 0.99326 1.00681 1.20141 0.91592 0.98682 0.97689 1.20146 0.97976 0.95824 1.10055 1.23728 0.90663 0.99131 1.00002 1.77267 1.23096 0.94592 1.17568 1.48361 1.07704 1.14278 1.45700 1.21808 0.97351 0.83352 1.01320 1.22386 0.86227 0.98796 1.01307 0.96069 0.89604 0.97767 0.93123 0.85932 0.92439 0.93937 0.92621 0.91417 0.91018 0.80489 0.91143 0.89378 0.89556 0.80894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 8.92 37.16 0.33 -3.76 16 2 C 0.21 5.45 2.38 -68.86 -0.16 5.29 16 3 H 0.03 0.93 7.11 -51.93 -0.37 0.56 16 4 C -0.49 -13.83 8.84 -34.44 -0.30 -14.13 16 5 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -26.19 11.32 55.43 0.63 -25.56 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.68 -14.46 6.04 -100.95 -0.61 -15.07 16 13 C 0.09 1.54 2.45 -67.71 -0.17 1.38 16 14 H 0.03 0.67 7.11 -51.93 -0.37 0.30 16 15 C -0.13 -2.27 9.40 37.16 0.35 -1.92 16 16 C -0.04 -0.61 5.30 -27.88 -0.15 -0.76 16 17 C -0.23 -3.45 4.94 -105.05 -0.52 -3.97 16 18 C 0.05 0.77 11.96 -17.36 -0.21 0.56 16 19 N -0.30 -4.93 12.58 30.62 0.39 -4.54 16 20 N -0.38 -5.43 4.01 -68.17 -0.27 -5.70 16 21 C 0.10 1.02 11.47 59.85 0.69 1.71 16 22 C 0.06 0.84 9.88 -17.23 -0.17 0.67 16 23 H 0.02 0.51 8.13 -51.93 -0.42 0.09 16 24 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 25 H 0.00 0.08 7.43 -51.93 -0.39 -0.31 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.32 6.56 5.73 -39.29 -0.23 6.33 16 28 H 0.06 1.10 7.43 -51.93 -0.39 0.71 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.18 2.22 8.06 -52.49 -0.42 1.79 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.17 2.15 7.86 -52.49 -0.41 1.74 16 LS Contribution 303.69 15.07 4.58 4.58 Total: -1.00 -31.70 303.69 -6.53 -38.23 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.81 Total: 4.86 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -0.41 Total: -13.49 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.13 Total: -50.88 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.70 -6.53 -38.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380151848.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.626 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds