Wall clock time and date at job start Mon Mar 30 2020 04:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47511 * 2 1 4 4 C 1.50698 * 109.47343 * 120.00392 * 2 1 3 5 5 H 1.08006 * 120.00278 * 119.99928 * 4 2 1 6 6 C 1.37881 * 119.99826 * 300.00200 * 4 2 1 7 7 N 1.31519 * 119.99678 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99951 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47331 * 59.99754 * 8 6 4 10 10 H 1.48507 * 109.47136 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47222 * 299.99254 * 8 6 4 12 12 N 1.46911 * 109.47257 * 240.00130 * 2 1 3 13 13 C 1.46902 * 110.99614 * 84.99924 * 12 2 1 14 14 H 1.08996 * 109.47149 * 324.99463 * 13 12 2 15 15 C 1.52997 * 109.47094 * 85.00357 * 13 12 2 16 16 C 1.53006 * 109.46626 * 205.00042 * 13 12 2 17 17 C 1.50703 * 109.47148 * 65.00251 * 16 13 12 18 18 C 1.39867 * 126.03744 * 90.01913 * 17 16 13 19 19 N 1.30841 * 108.20201 * 179.97438 * 18 17 16 20 20 N 1.40093 * 108.20225 * 359.97438 * 19 18 17 21 21 C 1.46497 * 126.03424 * 179.97438 * 20 19 18 22 22 C 1.34942 * 107.92404 * 359.76108 * 20 19 18 23 23 H 1.09005 * 109.46824 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47175 * 299.99750 * 1 2 3 25 25 H 1.09002 * 109.47293 * 60.00141 * 1 2 3 26 26 H 0.96999 * 119.99401 * 180.02562 * 7 6 4 27 27 H 1.00897 * 110.99488 * 321.04540 * 12 2 1 28 28 H 1.09002 * 109.47153 * 299.99508 * 15 13 12 29 29 H 1.09001 * 109.46832 * 179.97438 * 15 13 12 30 30 H 1.09004 * 109.47261 * 59.99681 * 15 13 12 31 31 H 1.08996 * 109.46945 * 184.99785 * 16 13 12 32 32 H 1.09000 * 109.47314 * 304.99907 * 16 13 12 33 33 H 1.07997 * 125.90203 * 0.02562 * 18 17 16 34 34 H 1.09006 * 109.47259 * 89.98001 * 21 20 19 35 35 H 1.08998 * 109.47176 * 209.97787 * 21 20 19 36 36 H 1.08997 * 109.47248 * 329.98013 * 21 20 19 37 37 H 1.07997 * 126.12641 * 180.23490 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 3.8075 -1.1191 4.0076 10 1 1.8279 -0.4194 5.2204 11 1 1.8280 -2.5200 4.0081 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2227 -2.3469 14 1 1.2576 0.9329 -2.2907 15 6 3.4111 0.9809 -2.3224 16 6 1.9770 -0.5796 -3.6455 17 6 0.6190 -1.2281 -3.7265 18 6 -0.5266 -0.6693 -4.3023 19 7 -1.5056 -1.5288 -4.1814 20 7 -1.0129 -2.6637 -3.5243 21 6 -1.7800 -3.8654 -3.1871 22 6 0.2943 -2.4564 -3.2611 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.7095 1.1616 3.4844 27 1 1.4496 -1.4979 -1.4101 28 1 3.4862 1.5525 -1.3973 29 1 3.4578 1.6597 -3.1740 30 1 4.2360 0.2706 -2.3786 31 1 2.1124 0.0875 -4.4967 32 1 2.7487 -1.3493 -3.6607 33 1 -0.5917 0.3033 -4.7673 34 1 -1.7186 -4.5783 -4.0093 35 1 -1.3699 -4.3166 -2.2836 36 1 -2.8223 -3.5953 -3.0174 37 1 0.9611 -3.1461 -2.7650 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380151848.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:27 Heat of formation + Delta-G solvation = 48.610015 kcal Electronic energy + Delta-G solvation = -17241.149862 eV Core-core repulsion = 14633.066632 eV Total energy + Delta-G solvation = -2608.083229 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.11115 -38.51969 -35.54975 -34.09736 -32.83738 -31.25948 -28.72815 -28.39046 -27.22391 -26.05635 -22.63634 -22.08641 -21.29019 -20.76995 -18.32169 -17.59429 -16.82435 -16.58494 -16.13641 -15.48881 -15.30768 -14.84881 -14.42035 -14.05858 -13.88567 -13.63379 -13.42755 -13.22093 -13.07598 -12.96008 -12.77393 -12.60055 -12.30732 -12.20280 -12.19320 -11.82841 -11.51070 -11.36251 -10.98441 -10.46309 -10.31119 -9.20731 -8.85662 -8.07062 -6.18436 0.99247 1.43318 1.45493 1.53046 1.74735 1.88724 2.45361 3.20951 3.67389 3.79602 4.05047 4.29739 4.31815 4.36845 4.44484 4.56891 4.67979 4.69915 4.77311 4.84865 4.88706 4.97299 5.06246 5.08286 5.14887 5.31815 5.38113 5.51833 5.57050 5.69455 5.77721 5.87461 6.18545 6.32216 6.74397 6.77659 6.93643 7.04471 7.52059 8.98494 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.024313 B = 0.007072 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.365478 B = 3958.423410 C = 4583.273981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.221 3.779 3 H -0.001 1.001 4 C -0.513 4.513 5 H 0.057 0.943 6 C 0.006 3.994 7 N -0.926 5.926 8 Si 0.960 3.040 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.270 1.270 12 N -0.678 5.678 13 C 0.084 3.916 14 H 0.012 0.988 15 C -0.130 4.130 16 C -0.029 4.029 17 C -0.246 4.246 18 C 0.041 3.959 19 N -0.335 5.335 20 N -0.381 5.381 21 C 0.093 3.907 22 C 0.054 3.946 23 H 0.021 0.979 24 H 0.058 0.942 25 H 0.011 0.989 26 H 0.259 0.741 27 H 0.329 0.671 28 H 0.024 0.976 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.195 0.805 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.973 -7.096 -12.940 14.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.112 3.888 3 H 0.017 0.983 4 C -0.551 4.551 5 H 0.076 0.924 6 C -0.192 4.192 7 N -0.566 5.566 8 Si 0.786 3.214 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.195 1.195 12 N -0.310 5.310 13 C -0.026 4.026 14 H 0.030 0.970 15 C -0.188 4.188 16 C -0.067 4.067 17 C -0.258 4.258 18 C -0.144 4.144 19 N -0.157 5.157 20 N -0.164 5.164 21 C -0.047 4.047 22 C -0.093 4.093 23 H 0.040 0.960 24 H 0.076 0.924 25 H 0.030 0.970 26 H 0.068 0.932 27 H 0.148 0.852 28 H 0.043 0.957 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.212 0.788 34 H 0.111 0.889 35 H 0.122 0.878 36 H 0.105 0.895 37 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -1.718 -7.297 -12.841 14.869 hybrid contribution -0.180 0.220 1.138 1.173 sum -1.898 -7.076 -11.703 13.807 Atomic orbital electron populations 1.22127 1.00877 0.98162 0.99091 1.18855 0.89086 0.92735 0.88108 0.98323 1.21469 1.30186 1.12442 0.91033 0.92450 1.25761 0.95523 0.95896 1.02005 1.70029 1.38261 1.24437 1.23897 0.85580 0.78740 0.78663 0.78422 1.19728 1.21241 1.19526 1.60840 1.57263 1.09526 1.03331 1.21524 0.96224 0.93930 0.90939 0.96982 1.21720 0.97059 0.99589 1.00416 1.20027 0.91705 0.98835 0.96172 1.20305 0.98241 0.96359 1.10894 1.24112 0.90569 0.99808 0.99957 1.77210 1.24053 0.95641 1.18794 1.48725 1.08009 1.14704 1.44921 1.22147 0.97107 0.82442 1.03023 1.22766 0.86628 0.99062 1.00800 0.95985 0.92359 0.97010 0.93152 0.85228 0.95692 0.90689 0.91920 0.88966 0.89998 0.78774 0.88861 0.87751 0.89492 0.79108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.32 8.92 71.98 0.64 -6.68 16 2 C 0.22 11.48 2.38 44.17 0.11 11.59 16 3 H 0.00 -0.07 7.11 -2.39 -0.02 -0.08 16 4 C -0.51 -28.83 8.84 25.60 0.23 -28.60 16 5 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 6 C 0.01 0.33 5.30 84.66 0.45 0.78 16 7 N -0.93 -54.72 11.32 21.45 0.24 -54.48 16 8 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 10 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 N -0.68 -28.51 6.04 -473.29 -2.86 -31.37 16 13 C 0.08 2.95 2.45 44.92 0.11 3.06 16 14 H 0.01 0.48 7.11 -2.39 -0.02 0.46 16 15 C -0.13 -4.24 9.40 71.98 0.68 -3.56 16 16 C -0.03 -0.76 5.30 29.85 0.16 -0.60 16 17 C -0.25 -7.02 4.94 -20.14 -0.10 -7.12 16 18 C 0.04 1.19 11.96 85.23 1.02 2.21 16 19 N -0.33 -10.53 12.58 -57.02 -0.72 -11.25 16 20 N -0.38 -10.37 4.01 -369.58 -1.48 -11.85 16 21 C 0.09 1.67 11.47 127.77 1.47 3.13 16 22 C 0.05 1.46 9.88 83.54 0.83 2.29 16 23 H 0.02 1.07 8.13 -2.38 -0.02 1.05 16 24 H 0.06 3.31 6.07 -2.39 -0.01 3.29 16 25 H 0.01 0.54 7.43 -2.39 -0.02 0.52 16 26 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 27 H 0.33 13.00 5.73 -89.70 -0.51 12.48 16 28 H 0.02 0.95 7.43 -2.39 -0.02 0.93 16 29 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.20 4.62 8.06 -2.91 -0.02 4.60 16 34 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 37 H 0.19 4.29 7.86 -2.91 -0.02 4.27 16 Total: -1.00 -67.94 303.69 3.32 -64.63 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.53 Total: 21.50 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: 5.58 Total: -23.52 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -4.82 Total: -108.95 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -67.94 3.32 -64.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380151848.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.237 kcal (2) G-P(sol) polarization free energy of solvation -67.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds