Wall clock time and date at job start Mon Mar 30 2020 04:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47379 * 2 1 4 4 N 1.46498 * 109.47131 * 239.99783 * 2 1 3 5 5 N 1.40082 * 126.03868 * 59.69041 * 4 2 1 6 6 C 1.30837 * 108.20868 * 179.85747 * 5 4 2 7 7 C 1.39864 * 108.19990 * 0.40231 * 6 5 4 8 8 C 1.34954 * 126.03896 * 240.00013 * 4 2 1 9 9 C 1.50703 * 126.12280 * 0.02562 * 8 4 2 10 10 N 1.46897 * 109.47038 * 274.99589 * 9 8 4 11 11 C 1.46902 * 111.00061 * 180.02562 * 10 9 8 12 12 H 1.08994 * 109.46876 * 34.99849 * 11 10 9 13 13 C 1.53004 * 109.46687 * 275.00220 * 11 10 9 14 14 C 1.50700 * 109.47200 * 155.00242 * 11 10 9 15 15 H 1.07994 * 120.00114 * 34.99073 * 14 11 10 16 16 C 1.37869 * 119.99733 * 214.99611 * 14 11 10 17 17 N 1.31515 * 120.00172 * 184.91461 * 16 14 11 18 18 Si 1.86804 * 120.00382 * 4.91352 * 16 14 11 19 19 H 1.48501 * 109.47255 * 84.82698 * 18 16 14 20 20 H 1.48501 * 109.47283 * 204.83493 * 18 16 14 21 21 H 1.48510 * 109.46640 * 324.83273 * 18 16 14 22 22 H 1.09001 * 109.46945 * 59.99903 * 1 2 3 23 23 H 1.09006 * 109.47015 * 299.99840 * 1 2 3 24 24 H 1.09004 * 109.47281 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46945 * 120.00097 * 2 1 3 26 26 H 1.09003 * 109.47620 * 59.99927 * 3 2 1 27 27 H 1.09000 * 109.47479 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47162 * 299.99964 * 3 2 1 29 29 H 1.08000 * 125.90109 * 180.15215 * 6 5 4 30 30 H 1.07999 * 126.04109 * 179.74628 * 7 6 5 31 31 H 1.08996 * 109.47324 * 34.99783 * 9 8 4 32 32 H 1.09008 * 109.46662 * 154.99987 * 9 8 4 33 33 H 1.00896 * 111.00116 * 56.04884 * 10 9 8 34 34 H 1.09000 * 109.46640 * 295.04381 * 13 11 10 35 35 H 1.09000 * 109.47325 * 55.04151 * 13 11 10 36 36 H 1.08996 * 109.46695 * 175.04661 * 13 11 10 37 37 H 0.97000 * 120.00136 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 7 1.7541 -0.3276 -2.5230 6 6 2.3624 -1.1788 -3.3087 7 6 3.0249 -2.1153 -2.5085 8 6 2.7974 -1.7924 -1.2143 9 6 3.3193 -2.5315 -0.0091 10 7 4.5597 -1.8963 0.4555 11 6 5.0990 -2.5920 1.6316 12 1 4.9027 -3.6605 1.5433 13 6 4.4267 -2.0527 2.8958 14 6 6.5856 -2.3595 1.7150 15 1 7.0020 -1.4118 1.4072 16 6 7.4140 -3.3567 2.1841 17 7 8.6976 -3.1223 2.3483 18 14 6.7133 -5.0409 2.5866 19 1 6.6557 -5.8615 1.3502 20 1 7.5819 -5.7124 3.5865 21 1 5.3449 -4.8875 3.1431 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9564 0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 2.3512 -1.1635 -4.3885 30 1 3.6142 -2.9488 -2.8613 31 1 2.5751 -2.5004 0.7866 32 1 3.5208 -3.5685 -0.2780 33 1 4.4137 -0.9170 0.6497 34 1 4.6952 -1.0050 3.0313 35 1 3.3447 -2.1407 2.7976 36 1 4.7613 -2.6281 3.7588 37 1 9.2805 -3.8240 2.6780 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380227026.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:35 Heat of formation + Delta-G solvation = 69.710764 kcal Electronic energy + Delta-G solvation = -17134.432890 eV Core-core repulsion = 14527.264658 eV Total energy + Delta-G solvation = -2607.168232 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.04687 -36.38456 -35.56616 -32.72764 -31.19287 -29.64894 -28.43533 -27.38698 -25.36546 -24.37006 -22.78657 -20.52332 -20.05282 -19.12163 -17.21221 -16.41109 -15.18145 -14.87699 -14.71949 -14.31291 -14.05382 -13.73622 -13.38626 -12.92216 -12.69309 -12.44296 -12.34693 -12.16336 -11.99797 -11.92227 -11.45953 -11.44925 -11.22139 -11.09030 -10.75781 -10.32929 -10.15927 -9.80812 -9.23254 -9.06376 -8.56053 -8.24121 -7.50194 -6.08327 -4.06207 2.11545 2.65578 3.12158 3.26032 3.32619 3.34518 4.38732 4.45635 4.77269 4.83675 4.92639 5.06377 5.15412 5.31198 5.40861 5.46181 5.55644 5.61484 5.66121 5.85070 5.90747 6.04945 6.05411 6.13241 6.14423 6.26196 6.48660 6.51269 6.69717 6.93993 7.03663 7.27211 7.61681 7.85179 7.97267 8.21003 8.61176 8.99584 9.53534 11.05194 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.031137 B = 0.006363 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.031913 B = 4399.635460 C = 4714.255256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.154 3.846 3 C -0.160 4.160 4 N -0.364 5.364 5 N -0.303 5.303 6 C 0.040 3.960 7 C -0.261 4.261 8 C 0.100 3.900 9 C 0.114 3.886 10 N -0.664 5.664 11 C 0.180 3.820 12 H 0.039 0.961 13 C -0.172 4.172 14 C -0.492 4.492 15 H 0.076 0.924 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.875 3.125 19 H -0.275 1.275 20 H -0.289 1.289 21 H -0.269 1.269 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.098 0.902 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.178 0.822 30 H 0.145 0.855 31 H 0.029 0.971 32 H 0.092 0.908 33 H 0.327 0.673 34 H 0.049 0.951 35 H 0.018 0.982 36 H 0.052 0.948 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.583 3.633 -4.407 16.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.052 3.948 3 C -0.218 4.218 4 N -0.148 5.148 5 N -0.124 5.124 6 C -0.145 4.145 7 C -0.291 4.291 8 C -0.027 4.027 9 C -0.017 4.017 10 N -0.295 5.295 11 C 0.072 3.928 12 H 0.057 0.943 13 C -0.232 4.232 14 C -0.531 4.531 15 H 0.094 0.906 16 C -0.131 4.131 17 N -0.537 5.537 18 Si 0.703 3.297 19 H -0.200 1.200 20 H -0.215 1.215 21 H -0.194 1.194 22 H 0.088 0.912 23 H 0.091 0.909 24 H 0.077 0.923 25 H 0.116 0.884 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.195 0.805 30 H 0.163 0.837 31 H 0.047 0.953 32 H 0.110 0.890 33 H 0.144 0.856 34 H 0.068 0.932 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.790 4.311 -4.601 17.002 hybrid contribution -0.284 -1.427 0.867 1.694 sum -16.074 2.884 -3.734 16.752 Atomic orbital electron populations 1.22114 0.93644 1.02713 1.03146 1.21256 0.95240 0.94144 0.84185 1.22119 1.02358 0.94297 1.03001 1.48718 1.39342 1.21615 1.05134 1.77181 1.24777 1.23805 0.86649 1.23740 0.97209 0.93804 0.99782 1.21211 1.10744 1.05956 0.91197 1.21199 0.94378 0.89620 0.97528 1.20632 0.92027 0.98250 0.90752 1.61006 1.24347 1.05711 1.38432 1.19704 0.95764 0.93731 0.83598 0.94308 1.22668 0.96788 1.01698 1.02000 1.20812 0.88417 1.02040 1.41809 0.90564 1.24975 0.94698 0.98316 0.95102 1.69887 1.03911 1.33618 1.46236 0.86914 0.79074 0.85175 0.78556 1.20027 1.21476 1.19367 0.91192 0.90914 0.92291 0.88421 0.90918 0.91571 0.91282 0.80521 0.83745 0.95329 0.89019 0.85620 0.93166 0.96281 0.92933 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.45 37.16 0.35 -1.27 16 2 C 0.15 1.88 3.65 -67.94 -0.25 1.64 16 3 C -0.16 -1.81 9.46 37.15 0.35 -1.46 16 4 N -0.36 -5.46 3.28 -50.70 -0.17 -5.63 16 5 N -0.30 -4.72 12.43 30.62 0.38 -4.34 16 6 C 0.04 0.58 12.03 -17.37 -0.21 0.37 16 7 C -0.26 -4.06 10.72 -40.02 -0.43 -4.49 16 8 C 0.10 1.62 6.44 -82.26 -0.53 1.09 16 9 C 0.11 1.92 5.43 -4.98 -0.03 1.89 16 10 N -0.66 -13.29 6.22 -109.22 -0.68 -13.97 16 11 C 0.18 4.06 2.23 -68.86 -0.15 3.90 16 12 H 0.04 0.90 4.95 -51.93 -0.26 0.64 16 13 C -0.17 -3.42 9.17 37.16 0.34 -3.07 16 14 C -0.49 -13.55 9.19 -34.44 -0.32 -13.87 16 15 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 16 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 17 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 18 Si 0.88 21.06 26.99 -169.99 -4.59 16.47 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.27 -6.10 6.82 56.52 0.39 -5.71 16 22 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.10 1.18 6.79 -51.93 -0.35 0.83 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.18 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.14 2.08 8.06 -52.49 -0.42 1.66 16 31 H 0.03 0.44 6.55 -51.93 -0.34 0.10 16 32 H 0.09 1.54 8.06 -51.92 -0.42 1.12 16 33 H 0.33 6.24 8.47 -39.29 -0.33 5.91 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.02 0.31 7.35 -51.93 -0.38 -0.07 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 306.92 15.07 4.63 4.63 Total: -1.00 -30.81 306.92 -6.51 -37.32 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.88 Total: 5.28 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -0.97 Total: -13.37 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: 0.31 Total: -50.32 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.59 Total: 16.47 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.81 -6.51 -37.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380227026.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.027 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds