Wall clock time and date at job start Mon Mar 30 2020 04:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46781 * 2 1 4 4 C 1.52999 * 109.47065 * 240.00668 * 2 1 3 5 5 C 1.50703 * 109.47123 * 174.99526 * 4 2 1 6 6 H 1.07993 * 120.00031 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00157 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99709 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00039 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47065 * 90.00757 * 9 7 5 11 11 H 1.48504 * 109.47310 * 210.00534 * 9 7 5 12 12 H 1.48498 * 109.47560 * 330.00493 * 9 7 5 13 13 N 1.46894 * 109.47148 * 120.00396 * 2 1 3 14 14 C 1.46899 * 111.00011 * 274.99816 * 13 2 1 15 15 C 1.53000 * 109.47198 * 180.02562 * 14 13 2 16 16 C 1.53004 * 109.47321 * 180.02562 * 15 14 13 17 17 N 1.46494 * 109.47106 * 179.97438 * 16 15 14 18 18 C 1.34954 * 126.03475 * 124.99860 * 17 16 15 19 19 C 1.35316 * 107.74368 * 179.73518 * 18 17 16 20 20 C 1.39868 * 107.92272 * 0.02562 * 19 18 17 21 21 N 1.30837 * 108.20148 * 359.97438 * 20 19 18 22 22 H 1.08997 * 109.47531 * 299.99576 * 1 2 3 23 23 H 1.08997 * 109.47432 * 59.99974 * 1 2 3 24 24 H 1.09007 * 109.46736 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47124 * 294.99740 * 4 2 1 26 26 H 1.09005 * 109.47222 * 54.99740 * 4 2 1 27 27 H 0.97006 * 119.99607 * 179.97438 * 8 7 5 28 28 H 1.00897 * 111.00152 * 38.96020 * 13 2 1 29 29 H 1.09002 * 109.47120 * 60.00161 * 14 13 2 30 30 H 1.08998 * 109.47641 * 300.00420 * 14 13 2 31 31 H 1.09002 * 109.47075 * 59.99985 * 15 14 13 32 32 H 1.08998 * 109.47046 * 300.00636 * 15 14 13 33 33 H 1.08999 * 109.46666 * 59.99741 * 16 15 14 34 34 H 1.09007 * 109.46675 * 300.00113 * 16 15 14 35 35 H 1.07999 * 126.12426 * 359.75442 * 18 17 16 36 36 H 1.07999 * 126.03437 * 179.97438 * 19 18 17 37 37 H 1.08001 * 125.89990 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5419 -0.6147 -1.3129 6 1 4.0790 -0.0860 -0.5393 7 6 4.2305 -1.1931 -2.3580 8 7 3.5764 -1.8374 -3.2997 9 14 6.0920 -1.0606 -2.4371 10 1 6.7010 -2.2126 -1.7249 11 1 6.5291 -1.0689 -3.8563 12 1 6.5260 0.2051 -1.7930 13 7 2.0197 -0.6925 1.1993 14 6 2.0825 0.2225 2.3468 15 6 2.5963 -0.5331 3.5741 16 6 2.6611 0.4198 4.7694 17 7 3.1525 -0.3038 5.9446 18 6 4.2123 0.0430 6.7047 19 6 4.3309 -0.8759 7.6909 20 6 3.3090 -1.8168 7.5276 21 7 2.6019 -1.4748 6.4812 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0278 -0.0005 25 1 1.7517 -1.7714 -1.2058 26 1 1.6053 -0.2615 -2.1370 27 1 4.0608 -2.2441 -4.0352 28 1 1.4496 -1.4980 1.4098 29 1 1.0871 0.6162 2.5525 30 1 2.7588 1.0461 2.1183 31 1 3.5918 -0.9265 3.3681 32 1 1.9203 -1.3570 3.8028 33 1 1.6655 0.8128 4.9751 34 1 3.3370 1.2439 4.5408 35 1 4.8511 0.9006 6.5532 36 1 5.0824 -0.8821 8.4665 37 1 3.1338 -2.6771 8.1566 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380256538.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:55 Heat of formation + Delta-G solvation = 63.861820 kcal Electronic energy + Delta-G solvation = -16206.668625 eV Core-core repulsion = 13599.246763 eV Total energy + Delta-G solvation = -2607.421861 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.15150 -37.15007 -34.79371 -32.68373 -31.39295 -30.11833 -28.55766 -27.23066 -24.80562 -22.96779 -21.68251 -21.06223 -20.56107 -19.58112 -17.29732 -16.22173 -15.73337 -15.06819 -14.62459 -14.44354 -14.24047 -14.06621 -13.38660 -13.06646 -12.84336 -12.56650 -12.23241 -11.96464 -11.74935 -11.49720 -11.37077 -10.93257 -10.84878 -10.61742 -10.53409 -10.40240 -10.03694 -9.49485 -9.26764 -8.96804 -8.66051 -8.23803 -7.58082 -5.86209 -3.83775 1.84952 2.46084 2.78622 3.40385 3.46053 3.49124 4.34388 4.57857 4.66859 4.75470 4.97581 5.12494 5.23872 5.32926 5.50201 5.52011 5.55521 5.67583 5.72368 5.85456 5.91712 5.92406 6.02928 6.20063 6.32012 6.47007 6.58201 6.63176 6.94759 7.02957 7.56609 7.65024 7.70166 8.02785 8.07203 8.18071 8.61863 9.21323 9.77353 11.26024 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.023953 B = 0.004721 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.674239 B = 5929.256059 C = 6755.228312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.089 3.911 3 H 0.064 0.936 4 C 0.032 3.968 5 C -0.488 4.488 6 H 0.057 0.943 7 C 0.049 3.951 8 N -0.904 5.904 9 Si 0.890 3.110 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.276 1.276 13 N -0.664 5.664 14 C 0.064 3.936 15 C -0.128 4.128 16 C 0.134 3.866 17 N -0.367 5.367 18 C 0.053 3.947 19 C -0.281 4.281 20 C 0.038 3.962 21 N -0.293 5.293 22 H 0.036 0.964 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.017 0.983 26 H 0.017 0.983 27 H 0.257 0.743 28 H 0.332 0.668 29 H 0.020 0.980 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.172 0.828 36 H 0.145 0.855 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.852 5.055 18.863 19.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.020 4.020 3 H 0.082 0.918 4 C -0.005 4.005 5 C -0.527 4.527 6 H 0.076 0.924 7 C -0.150 4.150 8 N -0.545 5.545 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.201 1.201 13 N -0.294 5.294 14 C -0.067 4.067 15 C -0.167 4.167 16 C 0.012 3.988 17 N -0.149 5.149 18 C -0.094 4.094 19 C -0.310 4.310 20 C -0.147 4.147 21 N -0.115 5.115 22 H 0.056 0.944 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.036 0.964 27 H 0.067 0.933 28 H 0.150 0.850 29 H 0.038 0.962 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.189 0.811 36 H 0.162 0.838 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.199 4.846 17.652 18.436 hybrid contribution 0.864 0.302 0.639 1.116 sum -1.335 5.148 18.290 19.048 Atomic orbital electron populations 1.22556 0.99514 1.01245 1.00583 1.21796 0.89886 0.98105 0.92217 0.91803 1.19119 0.96230 0.95422 0.89721 1.21143 0.91917 1.32871 1.06739 0.92445 1.25009 0.97985 0.95940 0.96048 1.69968 1.35158 1.37021 1.12391 0.86631 0.86485 0.78260 0.76753 1.20918 1.21586 1.20146 1.60499 1.57936 1.08549 1.02406 1.21834 0.98348 0.96015 0.90460 1.21829 1.03921 0.98471 0.92433 1.21782 1.00805 0.93960 0.82219 1.48829 1.22702 1.20149 1.23189 1.22606 0.92322 1.01019 0.93461 1.21489 1.05497 0.99251 1.04802 1.23874 0.94668 1.00170 0.96035 1.77356 1.22452 0.99346 1.12345 0.94448 0.92455 0.93006 0.96509 0.96449 0.93343 0.85036 0.96181 0.91237 0.90317 0.90791 0.89959 0.88517 0.81074 0.83771 0.80263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.02 9.16 37.16 0.34 -2.67 16 2 C 0.09 1.79 2.53 -67.72 -0.17 1.62 16 3 H 0.06 1.30 7.80 -51.93 -0.40 0.89 16 4 C 0.03 0.83 4.65 -27.88 -0.13 0.70 16 5 C -0.49 -13.89 8.84 -34.44 -0.30 -14.19 16 6 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -27.71 13.29 55.43 0.74 -26.97 16 9 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.66 -12.28 5.96 -106.73 -0.64 -12.91 16 14 C 0.06 0.92 5.48 -3.82 -0.02 0.90 16 15 C -0.13 -1.69 5.67 -26.73 -0.15 -1.84 16 16 C 0.13 1.42 6.51 -4.04 -0.03 1.39 16 17 N -0.37 -4.49 3.68 -61.36 -0.23 -4.72 16 18 C 0.05 0.54 11.45 -17.22 -0.20 0.34 16 19 C -0.28 -2.86 10.80 -40.01 -0.43 -3.29 16 20 C 0.04 0.44 12.03 -17.37 -0.21 0.23 16 21 N -0.29 -4.07 12.42 30.62 0.38 -3.69 16 22 H 0.04 0.54 7.45 -51.93 -0.39 0.16 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.86 8.13 -51.93 -0.42 0.43 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.33 5.86 8.47 -39.29 -0.33 5.52 16 29 H 0.02 0.27 7.44 -51.93 -0.39 -0.12 16 30 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.10 0.81 8.07 -51.92 -0.42 0.39 16 35 H 0.17 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 313.28 15.07 4.72 4.72 Total: -1.00 -32.91 313.28 -7.56 -40.48 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.12 Total: 1.26 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -1.40 Total: -15.47 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.25 Total: -48.30 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.91 -7.56 -40.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380256538.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.337 kcal (2) G-P(sol) polarization free energy of solvation -32.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds