Wall clock time and date at job start Mon Mar 30 2020 04:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46781 * 2 1 4 4 C 1.52999 * 109.47065 * 240.00668 * 2 1 3 5 5 C 1.50703 * 109.47123 * 174.99526 * 4 2 1 6 6 H 1.07993 * 120.00031 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00157 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99709 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00039 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47065 * 90.00757 * 9 7 5 11 11 H 1.48504 * 109.47310 * 210.00534 * 9 7 5 12 12 H 1.48498 * 109.47560 * 330.00493 * 9 7 5 13 13 N 1.46894 * 109.47148 * 120.00396 * 2 1 3 14 14 C 1.46899 * 111.00011 * 274.99816 * 13 2 1 15 15 C 1.53000 * 109.47198 * 180.02562 * 14 13 2 16 16 C 1.53004 * 109.47321 * 180.02562 * 15 14 13 17 17 N 1.46494 * 109.47106 * 179.97438 * 16 15 14 18 18 C 1.34954 * 126.03475 * 124.99860 * 17 16 15 19 19 C 1.35316 * 107.74368 * 179.73518 * 18 17 16 20 20 C 1.39868 * 107.92272 * 0.02562 * 19 18 17 21 21 N 1.30837 * 108.20148 * 359.97438 * 20 19 18 22 22 H 1.08997 * 109.47531 * 299.99576 * 1 2 3 23 23 H 1.08997 * 109.47432 * 59.99974 * 1 2 3 24 24 H 1.09007 * 109.46736 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47124 * 294.99740 * 4 2 1 26 26 H 1.09005 * 109.47222 * 54.99740 * 4 2 1 27 27 H 0.97006 * 119.99607 * 179.97438 * 8 7 5 28 28 H 1.00897 * 111.00152 * 38.96020 * 13 2 1 29 29 H 1.09002 * 109.47120 * 60.00161 * 14 13 2 30 30 H 1.08998 * 109.47641 * 300.00420 * 14 13 2 31 31 H 1.09002 * 109.47075 * 59.99985 * 15 14 13 32 32 H 1.08998 * 109.47046 * 300.00636 * 15 14 13 33 33 H 1.08999 * 109.46666 * 59.99741 * 16 15 14 34 34 H 1.09007 * 109.46675 * 300.00113 * 16 15 14 35 35 H 1.07999 * 126.12426 * 359.75442 * 18 17 16 36 36 H 1.07999 * 126.03437 * 179.97438 * 19 18 17 37 37 H 1.08001 * 125.89990 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5419 -0.6147 -1.3129 6 1 4.0790 -0.0860 -0.5393 7 6 4.2305 -1.1931 -2.3580 8 7 3.5764 -1.8374 -3.2997 9 14 6.0920 -1.0606 -2.4371 10 1 6.7010 -2.2126 -1.7249 11 1 6.5291 -1.0689 -3.8563 12 1 6.5260 0.2051 -1.7930 13 7 2.0197 -0.6925 1.1993 14 6 2.0825 0.2225 2.3468 15 6 2.5963 -0.5331 3.5741 16 6 2.6611 0.4198 4.7694 17 7 3.1525 -0.3038 5.9446 18 6 4.2123 0.0430 6.7047 19 6 4.3309 -0.8759 7.6909 20 6 3.3090 -1.8168 7.5276 21 7 2.6019 -1.4748 6.4812 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0278 -0.0005 25 1 1.7517 -1.7714 -1.2058 26 1 1.6053 -0.2615 -2.1370 27 1 4.0608 -2.2441 -4.0352 28 1 1.4496 -1.4980 1.4098 29 1 1.0871 0.6162 2.5525 30 1 2.7588 1.0461 2.1183 31 1 3.5918 -0.9265 3.3681 32 1 1.9203 -1.3570 3.8028 33 1 1.6655 0.8128 4.9751 34 1 3.3370 1.2439 4.5408 35 1 4.8511 0.9006 6.5532 36 1 5.0824 -0.8821 8.4665 37 1 3.1338 -2.6771 8.1566 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380256538.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:55 Heat of formation + Delta-G solvation = 41.979297 kcal Electronic energy + Delta-G solvation = -16207.617522 eV Core-core repulsion = 13599.246763 eV Total energy + Delta-G solvation = -2608.370759 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.95650 -38.57797 -35.99640 -34.61850 -32.70406 -31.00640 -29.86018 -29.00791 -25.91009 -24.90155 -22.78157 -21.86459 -21.62192 -21.07078 -18.39962 -18.09824 -16.81480 -16.52554 -16.28421 -15.62517 -15.46945 -15.11672 -14.56409 -14.28231 -14.14739 -13.68997 -13.60284 -13.31824 -13.26825 -13.09056 -12.69706 -12.57134 -12.42368 -12.24708 -11.91860 -11.83680 -11.46688 -11.14617 -11.09349 -10.49275 -10.34654 -9.46722 -9.00862 -8.09908 -6.14955 1.04595 1.40856 1.42734 1.52683 1.68473 2.00328 2.47118 3.20583 3.32644 3.70232 4.04330 4.10939 4.17149 4.22347 4.29051 4.38406 4.43397 4.57606 4.60583 4.67091 4.80037 4.92939 4.94412 5.12211 5.18959 5.20332 5.25789 5.30640 5.50811 5.68122 5.80620 5.90007 6.19853 6.33789 6.50359 6.69811 6.82962 6.99512 7.50755 9.02456 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.023953 B = 0.004721 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.674239 B = 5929.256059 C = 6755.228312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.100 3.900 3 H 0.064 0.936 4 C 0.036 3.964 5 C -0.499 4.499 6 H 0.058 0.942 7 C -0.009 4.009 8 N -0.942 5.942 9 Si 0.958 3.042 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.264 1.264 13 N -0.687 5.687 14 C 0.070 3.930 15 C -0.114 4.114 16 C 0.136 3.864 17 N -0.380 5.380 18 C 0.050 3.950 19 C -0.290 4.290 20 C 0.031 3.969 21 N -0.342 5.342 22 H 0.067 0.933 23 H 0.056 0.944 24 H 0.049 0.951 25 H -0.013 1.013 26 H -0.008 1.008 27 H 0.258 0.742 28 H 0.334 0.666 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.124 0.876 35 H 0.205 0.795 36 H 0.168 0.832 37 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.952 6.487 20.629 21.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.010 4.010 3 H 0.082 0.918 4 C -0.002 4.002 5 C -0.538 4.538 6 H 0.076 0.924 7 C -0.204 4.204 8 N -0.585 5.585 9 Si 0.784 3.216 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.188 1.188 13 N -0.318 5.318 14 C -0.060 4.060 15 C -0.152 4.152 16 C 0.015 3.985 17 N -0.163 5.163 18 C -0.096 4.096 19 C -0.319 4.319 20 C -0.155 4.155 21 N -0.165 5.165 22 H 0.086 0.914 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.005 0.995 26 H 0.011 0.989 27 H 0.067 0.933 28 H 0.152 0.848 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.142 0.858 35 H 0.222 0.778 36 H 0.185 0.815 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.303 6.289 19.442 20.476 hybrid contribution 0.587 -0.167 0.129 0.623 sum -0.717 6.122 19.571 20.519 Atomic orbital electron populations 1.22413 0.96781 1.01623 1.02043 1.21454 0.92030 0.96975 0.90533 0.91804 1.19021 0.95189 0.94080 0.91904 1.21510 0.93412 1.32341 1.06500 0.92417 1.25899 1.03052 0.95694 0.95784 1.70105 1.37131 1.38115 1.13123 0.85548 0.80457 0.78652 0.76929 1.20619 1.21107 1.18784 1.60340 1.58404 1.09620 1.03419 1.21833 0.99650 0.95272 0.89217 1.21624 1.01839 0.98552 0.93223 1.21827 1.02367 0.93557 0.80730 1.48966 1.23406 1.20133 1.23760 1.23259 0.91757 1.01806 0.92804 1.21879 1.05676 0.98830 1.05486 1.24401 0.94569 1.00936 0.95556 1.77293 1.24335 1.00933 1.13911 0.91440 0.92463 0.93216 0.99481 0.98931 0.93295 0.84811 0.93974 0.91028 0.92787 0.92317 0.88846 0.85807 0.77779 0.81465 0.78162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.45 9.16 71.98 0.66 -4.79 16 2 C 0.10 3.96 2.53 44.92 0.11 4.07 16 3 H 0.06 2.52 7.80 -2.39 -0.02 2.51 16 4 C 0.04 1.88 4.65 29.85 0.14 2.01 16 5 C -0.50 -28.72 8.84 25.60 0.23 -28.50 16 6 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 7 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 8 N -0.94 -58.90 13.29 21.45 0.28 -58.62 16 9 Si 0.96 45.93 29.54 68.60 2.03 47.96 16 10 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 13 N -0.69 -25.04 5.96 -491.59 -2.93 -27.97 16 14 C 0.07 1.89 5.48 86.30 0.47 2.37 16 15 C -0.11 -2.88 5.67 30.60 0.17 -2.71 16 16 C 0.14 2.59 6.51 86.38 0.56 3.15 16 17 N -0.38 -8.69 3.68 -348.06 -1.28 -9.97 16 18 C 0.05 0.90 11.45 83.54 0.96 1.86 16 19 C -0.29 -5.28 10.80 21.99 0.24 -5.04 16 20 C 0.03 0.66 12.03 85.24 1.02 1.68 16 21 N -0.34 -9.29 12.42 -57.02 -0.71 -9.99 16 22 H 0.07 1.77 7.45 -2.39 -0.02 1.75 16 23 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.05 1.60 8.13 -2.38 -0.02 1.59 16 25 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 26 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 27 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 28 H 0.33 11.76 8.47 -89.70 -0.76 11.00 16 29 H 0.04 0.98 7.44 -2.39 -0.02 0.96 16 30 H 0.07 1.92 8.06 -2.39 -0.02 1.90 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.12 1.66 8.07 -2.38 -0.02 1.64 16 35 H 0.21 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.20 3.04 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -72.10 313.28 2.69 -69.41 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.27 Total: 15.11 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: 5.03 Total: -25.94 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -4.63 Total: -106.54 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -72.10 2.69 -69.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380256538.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.388 kcal (2) G-P(sol) polarization free energy of solvation -72.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds