Wall clock time and date at job start Mon Mar 30 2020 04:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46944 * 2 1 4 4 C 1.52999 * 109.47174 * 240.00201 * 2 1 3 5 5 C 1.50701 * 109.47207 * 175.00079 * 4 2 1 6 6 H 1.07998 * 120.00051 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99837 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00395 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99708 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46991 * 60.00281 * 9 7 5 11 11 H 1.48500 * 109.46873 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47339 * 300.00276 * 9 7 5 13 13 N 1.46895 * 109.46927 * 119.99911 * 2 1 3 14 14 C 1.46903 * 111.00085 * 274.99946 * 13 2 1 15 15 C 1.52997 * 109.46857 * 180.02562 * 14 13 2 16 16 C 1.50697 * 109.47050 * 180.02562 * 15 14 13 17 17 C 1.34669 * 126.59585 * 85.16185 * 16 15 14 18 18 N 1.34133 * 108.02235 * 180.28483 * 17 16 15 19 19 C 1.30502 * 109.25197 * 359.73051 * 18 17 16 20 20 N 1.35041 * 108.70384 * 0.02562 * 19 18 17 21 21 C 1.46499 * 126.39764 * 180.02562 * 20 19 18 22 22 H 1.09005 * 109.46938 * 60.00144 * 1 2 3 23 23 H 1.09000 * 109.47550 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47221 * 300.00302 * 1 2 3 25 25 H 1.08998 * 109.47231 * 295.00076 * 4 2 1 26 26 H 1.09001 * 109.47518 * 55.00085 * 4 2 1 27 27 H 0.96999 * 120.00249 * 179.97438 * 8 7 5 28 28 H 1.00903 * 111.00128 * 38.95944 * 13 2 1 29 29 H 1.08997 * 109.46664 * 60.00139 * 14 13 2 30 30 H 1.08995 * 109.46703 * 299.99976 * 14 13 2 31 31 H 1.08994 * 109.47561 * 59.99911 * 15 14 13 32 32 H 1.09007 * 109.47427 * 299.99787 * 15 14 13 33 33 H 1.07993 * 125.98713 * 0.05405 * 17 16 15 34 34 H 1.08005 * 125.64657 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.47391 * 90.01916 * 21 20 19 36 36 H 1.09001 * 109.46813 * 330.01972 * 21 20 19 37 37 H 1.09004 * 109.47041 * 210.02099 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2304 -1.1935 -2.3578 8 7 3.5765 -1.8377 -3.2996 9 14 6.0921 -1.0611 -2.4368 10 1 6.6846 -1.6862 -1.2271 11 1 6.5871 -1.7612 -3.6493 12 1 6.4845 0.3699 -2.4972 13 7 2.0196 -0.6925 1.1994 14 6 2.0824 0.2226 2.3469 15 6 2.5961 -0.5329 3.5741 16 6 2.6600 0.4057 4.7514 17 6 1.6512 0.7126 5.5891 18 7 2.1154 1.5856 6.4955 19 6 3.3751 1.8269 6.2546 20 7 3.7553 1.1081 5.1764 21 6 5.0895 1.0877 4.5717 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.7517 -1.7714 -1.2057 26 1 1.6054 -0.2617 -2.1370 27 1 4.0608 -2.2445 -4.0350 28 1 1.4495 -1.4980 1.4100 29 1 1.0870 0.6163 2.5524 30 1 2.7588 1.0461 2.1182 31 1 3.5915 -0.9263 3.3683 32 1 1.9200 -1.3567 3.8030 33 1 0.6439 0.3267 5.5376 34 1 4.0087 2.4913 6.8235 35 1 5.6866 0.3024 5.0353 36 1 5.5736 2.0519 4.7271 37 1 5.0009 0.8937 3.5027 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380259090.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:31 Heat of formation + Delta-G solvation = 26.817236 kcal Electronic energy + Delta-G solvation = -16589.984471 eV Core-core repulsion = 13980.956236 eV Total energy + Delta-G solvation = -2609.028235 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.98875 -38.47443 -35.36245 -34.81983 -33.91700 -31.09128 -29.13705 -27.85521 -27.65740 -25.09579 -23.42231 -22.33323 -21.54407 -20.59495 -18.36310 -17.87190 -16.81279 -16.48944 -16.37399 -16.00318 -15.40858 -14.87281 -14.63309 -14.33072 -14.02815 -13.84769 -13.76159 -13.51441 -13.31908 -13.19475 -12.82660 -12.75730 -12.49419 -12.34007 -12.09101 -11.86813 -11.16399 -11.09851 -10.89939 -10.47468 -10.46119 -9.27565 -9.02167 -8.07497 -6.12706 1.10282 1.42775 1.45620 1.52984 1.96187 2.20331 2.48909 3.23241 3.36699 3.88767 3.96519 4.01646 4.08811 4.22884 4.31222 4.42505 4.46054 4.52993 4.59745 4.68227 4.69300 4.73890 4.93250 5.03086 5.11300 5.24406 5.29168 5.49905 5.53046 5.69061 5.80519 5.91765 6.33060 6.33414 6.48239 6.74719 7.01052 7.13271 7.52776 9.04563 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.025544 B = 0.005589 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.900244 B = 5008.750778 C = 5922.384414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.100 3.900 3 H 0.054 0.946 4 C 0.037 3.963 5 C -0.499 4.499 6 H 0.057 0.943 7 C -0.008 4.008 8 N -0.942 5.942 9 Si 0.958 3.042 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.270 1.270 13 N -0.680 5.680 14 C 0.078 3.922 15 C -0.031 4.031 16 C -0.021 4.021 17 C -0.049 4.049 18 N -0.535 5.535 19 C 0.177 3.823 20 N -0.460 5.460 21 C 0.064 3.936 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.062 0.938 25 H -0.008 1.008 26 H -0.010 1.010 27 H 0.258 0.742 28 H 0.340 0.660 29 H 0.031 0.969 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.173 0.827 34 H 0.238 0.762 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.044 5.433 16.739 17.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.010 4.010 3 H 0.072 0.928 4 C -0.001 4.001 5 C -0.537 4.537 6 H 0.075 0.925 7 C -0.203 4.203 8 N -0.584 5.584 9 Si 0.784 3.216 10 H -0.194 1.194 11 H -0.215 1.215 12 H -0.196 1.196 13 N -0.310 5.310 14 C -0.051 4.051 15 C -0.070 4.070 16 C -0.137 4.137 17 C -0.196 4.196 18 N -0.254 5.254 19 C -0.105 4.105 20 N -0.142 5.142 21 C -0.078 4.078 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.011 0.989 26 H 0.008 0.992 27 H 0.067 0.933 28 H 0.158 0.842 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.191 0.809 34 H 0.254 0.746 35 H 0.109 0.891 36 H 0.132 0.868 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.447 5.775 16.994 18.007 hybrid contribution 0.314 -0.363 -0.982 1.093 sum 1.761 5.413 16.012 16.993 Atomic orbital electron populations 1.22414 0.96806 1.01909 1.01787 1.21425 0.92028 0.96666 0.90833 0.92758 1.19005 0.95230 0.94270 0.91578 1.21441 0.93302 1.32373 1.06579 0.92495 1.25890 1.03017 0.95673 0.95752 1.70092 1.37220 1.38034 1.13068 0.85613 0.80451 0.78292 0.77286 1.19400 1.21490 1.19556 1.60369 1.58294 1.09494 1.02888 1.21781 0.98848 0.94951 0.89551 1.19884 1.03342 0.95303 0.88501 1.21326 0.88348 1.02636 1.01420 1.22284 1.00140 1.01747 0.95444 1.70227 1.10015 1.17821 1.27337 1.25589 0.93362 1.00416 0.91145 1.45550 1.10946 1.33644 1.24085 1.22311 0.79839 1.05932 0.99680 0.92686 0.92545 0.91879 0.98924 0.99181 0.93311 0.84183 0.95062 0.93186 0.90669 0.88613 0.80949 0.74553 0.89059 0.86811 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.49 9.16 71.98 0.66 -4.83 16 2 C 0.10 3.96 2.53 44.92 0.11 4.08 16 3 H 0.05 2.22 7.80 -2.39 -0.02 2.20 16 4 C 0.04 1.90 4.65 29.85 0.14 2.03 16 5 C -0.50 -27.98 8.84 25.60 0.23 -27.75 16 6 H 0.06 3.12 7.74 -2.91 -0.02 3.09 16 7 C -0.01 -0.44 5.46 84.66 0.46 0.03 16 8 N -0.94 -57.71 13.29 21.45 0.28 -57.42 16 9 Si 0.96 44.54 29.54 68.60 2.03 46.56 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 13 N -0.68 -23.70 5.96 -491.59 -2.93 -26.63 16 14 C 0.08 2.23 5.47 86.30 0.47 2.70 16 15 C -0.03 -0.75 5.65 29.85 0.17 -0.59 16 16 C -0.02 -0.52 6.21 40.95 0.25 -0.26 16 17 C -0.05 -1.28 11.79 83.52 0.98 -0.30 16 18 N -0.54 -14.67 11.25 -200.31 -2.25 -16.92 16 19 C 0.18 3.69 12.56 180.26 2.26 5.96 16 20 N -0.46 -9.61 3.15 -537.87 -1.70 -11.31 16 21 C 0.06 0.92 10.83 127.77 1.38 2.30 16 22 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 23 H 0.06 1.76 8.13 -2.39 -0.02 1.74 16 24 H 0.06 1.73 7.45 -2.39 -0.02 1.71 16 25 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 26 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 27 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 28 H 0.34 10.85 8.47 -89.69 -0.76 10.09 16 29 H 0.03 0.85 7.44 -2.39 -0.02 0.84 16 30 H 0.05 1.56 8.05 -2.39 -0.02 1.54 16 31 H 0.07 1.88 7.63 -2.39 -0.02 1.86 16 32 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.17 3.98 8.06 -2.91 -0.02 3.96 16 34 H 0.24 2.78 8.06 -2.91 -0.02 2.75 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.08 1.40 7.67 -2.38 -0.02 1.38 16 Total: -1.00 -70.19 311.33 2.83 -67.36 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.28 Total: 15.00 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: 7.13 Total: -16.63 kcal Atomic # 7 Polarization: -105.69 SS G_CDS: -6.60 Total: -112.29 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -70.19 2.83 -67.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380259090.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.174 kcal (2) G-P(sol) polarization free energy of solvation -70.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds