Wall clock time and date at job start Mon Mar 30 2020 03:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46957 * 2 1 4 4 H 1.09003 * 109.47046 * 305.83540 * 3 2 1 5 5 N 1.46900 * 109.47515 * 65.83787 * 3 2 1 6 6 C 1.46895 * 111.00281 * 204.21911 * 5 3 2 7 7 C 1.53000 * 109.47224 * 184.95319 * 6 5 3 8 8 C 1.50702 * 109.47025 * 180.02562 * 7 6 5 9 9 H 1.08003 * 120.00276 * 359.97438 * 8 7 6 10 10 C 1.37872 * 120.00017 * 180.02562 * 8 7 6 11 11 N 1.31521 * 119.99955 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00266 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46937 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47348 * 119.99965 * 12 10 8 15 15 H 1.48502 * 109.47355 * 239.99831 * 12 10 8 16 16 C 1.50703 * 109.47104 * 185.83989 * 3 2 1 17 17 C 1.34669 * 126.59331 * 87.70737 * 16 3 2 18 18 N 1.34125 * 108.02276 * 179.87523 * 17 16 3 19 19 C 1.30500 * 109.25240 * 0.39791 * 18 17 16 20 20 N 1.35043 * 108.70216 * 359.75663 * 19 18 17 21 21 C 1.46502 * 126.39860 * 179.97438 * 20 19 18 22 22 H 1.08994 * 109.47582 * 53.24044 * 1 2 3 23 23 H 1.09006 * 109.47026 * 293.23462 * 1 2 3 24 24 H 1.09006 * 109.47082 * 173.24383 * 1 2 3 25 25 H 1.08999 * 109.47305 * 119.99535 * 2 1 3 26 26 H 1.08999 * 109.47231 * 239.99771 * 2 1 3 27 27 H 1.00901 * 110.99539 * 328.17057 * 5 3 2 28 28 H 1.09003 * 109.46950 * 304.95626 * 6 5 3 29 29 H 1.08997 * 109.47139 * 64.94947 * 6 5 3 30 30 H 1.08996 * 109.46827 * 299.99738 * 7 6 5 31 31 H 1.08991 * 109.47296 * 60.00179 * 7 6 5 32 32 H 0.96996 * 119.99729 * 180.02562 * 11 10 8 33 33 H 1.08008 * 125.98802 * 0.03082 * 17 16 3 34 34 H 1.08005 * 125.64974 * 179.77160 * 19 18 17 35 35 H 1.09004 * 109.47102 * 263.90700 * 21 20 19 36 36 H 1.09007 * 109.46980 * 23.90150 * 21 20 19 37 37 H 1.08997 * 109.47159 * 143.90164 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5938 1.9856 -0.8332 5 7 1.6687 2.0932 1.2636 6 6 1.6057 3.5523 1.1058 7 6 1.3388 4.2013 2.4654 8 6 1.2735 5.6982 2.3033 9 1 1.4092 6.1422 1.3282 10 6 1.0415 6.5008 3.4000 11 7 0.8767 5.9601 4.5876 12 14 0.9612 8.3563 3.1993 13 1 1.1779 8.7097 1.7733 14 1 -0.3725 8.8440 3.6336 15 1 2.0151 8.9903 4.0316 16 6 3.5400 1.4450 -0.1446 17 6 4.2354 1.4398 -1.2978 18 7 5.5419 1.4472 -0.9946 19 6 5.6826 1.4484 0.3028 20 7 4.4576 1.4470 0.8711 21 6 4.1653 1.4471 2.3067 22 1 -0.3634 0.6150 -0.8232 23 1 -0.3633 0.4054 0.9444 24 1 -0.3633 -1.0206 -0.1209 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 0.7955 1.7294 1.6147 28 1 2.5536 3.9162 0.7092 29 1 0.8012 3.8088 0.4165 30 1 0.3909 3.8375 2.8618 31 1 2.1433 3.9449 3.1546 32 1 0.7131 6.5248 5.3591 33 1 3.8147 1.4334 -2.2926 34 1 6.6230 1.4504 0.8340 35 1 3.9872 0.4251 2.6413 36 1 5.0130 1.8648 2.8501 37 1 3.2784 2.0515 2.4969 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380339634.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:02 Heat of formation + Delta-G solvation = 47.843167 kcal Electronic energy + Delta-G solvation = -17117.015226 eV Core-core repulsion = 14508.898743 eV Total energy + Delta-G solvation = -2608.116482 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.78022 -37.24767 -33.82040 -33.45899 -32.10572 -30.01983 -28.56848 -26.49038 -25.43901 -23.72445 -21.54733 -21.08081 -20.56320 -19.36408 -16.68162 -16.37287 -15.72635 -15.15923 -14.91096 -14.52487 -14.09000 -13.71517 -13.47167 -13.05809 -12.97183 -12.49684 -12.35044 -12.20514 -12.06900 -11.63352 -11.22141 -11.12508 -11.02070 -10.89597 -10.55763 -10.10935 -9.69701 -9.45963 -9.21651 -9.17875 -8.43217 -8.05136 -7.96109 -6.07321 -4.09738 2.37569 3.24042 3.26985 3.34913 3.39268 3.43784 4.35253 4.54701 4.83671 4.98298 5.00650 5.13026 5.28465 5.29737 5.35592 5.60712 5.62701 5.67049 5.76346 5.91645 5.96342 6.07393 6.19261 6.23299 6.33329 6.36761 6.73138 6.87309 7.03723 7.31221 7.54531 7.61696 7.67633 7.82361 7.96231 8.35160 8.37088 8.97263 9.54943 11.03974 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.024429 B = 0.006243 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.906400 B = 4483.980963 C = 5018.915573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C 0.157 3.843 4 H 0.064 0.936 5 N -0.690 5.690 6 C 0.064 3.936 7 C 0.029 3.971 8 C -0.522 4.522 9 H 0.054 0.946 10 C 0.059 3.941 11 N -0.894 5.894 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.005 3.995 17 C -0.044 4.044 18 N -0.500 5.500 19 C 0.163 3.837 20 N -0.431 5.431 21 C 0.058 3.942 22 H 0.055 0.945 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.343 0.657 28 H 0.057 0.943 29 H 0.021 0.979 30 H 0.015 0.985 31 H 0.022 0.978 32 H 0.260 0.740 33 H 0.161 0.839 34 H 0.198 0.802 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.387 -11.955 -6.083 13.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C 0.045 3.955 4 H 0.081 0.919 5 N -0.323 5.323 6 C -0.064 4.064 7 C -0.009 4.009 8 C -0.561 4.561 9 H 0.073 0.927 10 C -0.142 4.142 11 N -0.533 5.533 12 Si 0.719 3.281 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.209 1.209 16 C -0.113 4.113 17 C -0.193 4.193 18 N -0.219 5.219 19 C -0.119 4.119 20 N -0.111 5.111 21 C -0.084 4.084 22 H 0.074 0.926 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.163 0.837 28 H 0.076 0.924 29 H 0.039 0.961 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.179 0.821 34 H 0.215 0.785 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.608 -11.894 -6.046 13.822 hybrid contribution -1.373 1.207 0.168 1.836 sum 2.235 -10.687 -5.879 12.400 Atomic orbital electron populations 1.21834 0.95484 1.01822 1.02205 1.21672 0.95724 0.95598 1.02706 1.19947 0.87623 0.94776 0.93132 0.91863 1.60622 1.38382 1.07128 1.26165 1.22242 0.99349 0.84044 1.00794 1.19053 0.97090 0.94481 0.90265 1.21199 1.49020 0.91679 0.94162 0.92733 1.24983 0.95230 0.98762 0.95264 1.69971 1.49164 1.35196 0.98936 0.86544 0.77649 0.85630 0.78247 1.19739 1.20961 1.20947 1.21192 0.92396 1.09818 0.87924 1.21902 0.89304 1.10628 0.97450 1.70194 1.19068 1.20140 1.12470 1.24807 0.89595 1.07653 0.89892 1.45148 1.06169 1.51874 1.07939 1.22546 1.05873 1.03819 0.76196 0.92592 0.92225 0.92453 0.91398 0.91280 0.83699 0.92403 0.96115 0.96709 0.95949 0.93009 0.82136 0.78509 0.91795 0.90945 0.84768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.62 37.16 0.36 -1.20 16 2 C -0.12 -1.34 5.50 -26.73 -0.15 -1.48 16 3 C 0.16 2.17 2.46 -68.86 -0.17 2.00 16 4 H 0.06 0.90 7.86 -51.93 -0.41 0.49 16 5 N -0.69 -10.81 3.38 -107.95 -0.36 -11.18 16 6 C 0.06 1.26 5.10 -3.83 -0.02 1.24 16 7 C 0.03 0.70 5.26 -27.88 -0.15 0.55 16 8 C -0.52 -14.45 9.11 -34.44 -0.31 -14.77 16 9 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 10 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 11 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 12 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 C 0.00 0.07 5.67 -81.60 -0.46 -0.39 16 17 C -0.04 -0.70 11.79 -17.81 -0.21 -0.91 16 18 N -0.50 -8.48 11.25 -14.66 -0.16 -8.65 16 19 C 0.16 2.43 12.55 -90.37 -1.13 1.29 16 20 N -0.43 -6.51 3.15 -121.36 -0.38 -6.89 16 21 C 0.06 0.78 10.69 59.85 0.64 1.42 16 22 H 0.05 0.56 8.13 -51.93 -0.42 0.13 16 23 H 0.06 0.62 6.70 -51.93 -0.35 0.27 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.34 5.08 6.68 -39.29 -0.26 4.81 16 28 H 0.06 1.24 7.89 -51.93 -0.41 0.83 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.02 0.58 7.78 -51.93 -0.40 0.18 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.16 2.20 8.06 -52.48 -0.42 1.77 16 34 H 0.20 2.21 8.06 -52.48 -0.42 1.79 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.87 8.13 -51.93 -0.42 0.44 16 37 H 0.13 2.17 4.92 -51.93 -0.26 1.91 16 LS Contribution 304.26 15.07 4.59 4.59 Total: -1.00 -30.80 304.26 -8.17 -38.97 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.86 Total: 2.87 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -1.70 Total: -10.67 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.18 Total: -52.16 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.80 -8.17 -38.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380339634.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.811 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds