Wall clock time and date at job start Mon Mar 30 2020 03:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46957 * 2 1 4 4 H 1.09003 * 109.47046 * 305.83540 * 3 2 1 5 5 N 1.46900 * 109.47515 * 65.83787 * 3 2 1 6 6 C 1.46895 * 111.00281 * 204.21911 * 5 3 2 7 7 C 1.53000 * 109.47224 * 184.95319 * 6 5 3 8 8 C 1.50702 * 109.47025 * 180.02562 * 7 6 5 9 9 H 1.08003 * 120.00276 * 359.97438 * 8 7 6 10 10 C 1.37872 * 120.00017 * 180.02562 * 8 7 6 11 11 N 1.31521 * 119.99955 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00266 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46937 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47348 * 119.99965 * 12 10 8 15 15 H 1.48502 * 109.47355 * 239.99831 * 12 10 8 16 16 C 1.50703 * 109.47104 * 185.83989 * 3 2 1 17 17 C 1.34669 * 126.59331 * 87.70737 * 16 3 2 18 18 N 1.34125 * 108.02276 * 179.87523 * 17 16 3 19 19 C 1.30500 * 109.25240 * 0.39791 * 18 17 16 20 20 N 1.35043 * 108.70216 * 359.75663 * 19 18 17 21 21 C 1.46502 * 126.39860 * 179.97438 * 20 19 18 22 22 H 1.08994 * 109.47582 * 53.24044 * 1 2 3 23 23 H 1.09006 * 109.47026 * 293.23462 * 1 2 3 24 24 H 1.09006 * 109.47082 * 173.24383 * 1 2 3 25 25 H 1.08999 * 109.47305 * 119.99535 * 2 1 3 26 26 H 1.08999 * 109.47231 * 239.99771 * 2 1 3 27 27 H 1.00901 * 110.99539 * 328.17057 * 5 3 2 28 28 H 1.09003 * 109.46950 * 304.95626 * 6 5 3 29 29 H 1.08997 * 109.47139 * 64.94947 * 6 5 3 30 30 H 1.08996 * 109.46827 * 299.99738 * 7 6 5 31 31 H 1.08991 * 109.47296 * 60.00179 * 7 6 5 32 32 H 0.96996 * 119.99729 * 180.02562 * 11 10 8 33 33 H 1.08008 * 125.98802 * 0.03082 * 17 16 3 34 34 H 1.08005 * 125.64974 * 179.77160 * 19 18 17 35 35 H 1.09004 * 109.47102 * 263.90700 * 21 20 19 36 36 H 1.09007 * 109.46980 * 23.90150 * 21 20 19 37 37 H 1.08997 * 109.47159 * 143.90164 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5938 1.9856 -0.8332 5 7 1.6687 2.0932 1.2636 6 6 1.6057 3.5523 1.1058 7 6 1.3388 4.2013 2.4654 8 6 1.2735 5.6982 2.3033 9 1 1.4092 6.1422 1.3282 10 6 1.0415 6.5008 3.4000 11 7 0.8767 5.9601 4.5876 12 14 0.9612 8.3563 3.1993 13 1 1.1779 8.7097 1.7733 14 1 -0.3725 8.8440 3.6336 15 1 2.0151 8.9903 4.0316 16 6 3.5400 1.4450 -0.1446 17 6 4.2354 1.4398 -1.2978 18 7 5.5419 1.4472 -0.9946 19 6 5.6826 1.4484 0.3028 20 7 4.4576 1.4470 0.8711 21 6 4.1653 1.4471 2.3067 22 1 -0.3634 0.6150 -0.8232 23 1 -0.3633 0.4054 0.9444 24 1 -0.3633 -1.0206 -0.1209 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 0.7955 1.7294 1.6147 28 1 2.5536 3.9162 0.7092 29 1 0.8012 3.8088 0.4165 30 1 0.3909 3.8375 2.8618 31 1 2.1433 3.9449 3.1546 32 1 0.7131 6.5248 5.3591 33 1 3.8147 1.4334 -2.2926 34 1 6.6230 1.4504 0.8340 35 1 3.9872 0.4251 2.6413 36 1 5.0130 1.8648 2.8501 37 1 3.2784 2.0515 2.4969 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380339634.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:01 Heat of formation + Delta-G solvation = 30.577671 kcal Electronic energy + Delta-G solvation = -17117.763914 eV Core-core repulsion = 14508.898743 eV Total energy + Delta-G solvation = -2608.865170 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.94395 -38.51589 -35.60176 -34.63582 -33.74479 -31.20336 -30.21652 -27.60859 -26.84440 -25.36429 -22.71073 -22.32788 -22.13922 -20.54037 -18.51508 -17.75911 -17.04541 -16.51602 -16.34810 -16.08728 -15.19156 -15.09802 -14.71952 -14.46674 -14.17141 -13.90750 -13.69669 -13.45381 -13.28877 -13.16211 -12.87010 -12.58174 -12.45620 -12.16795 -12.03218 -11.76151 -11.40051 -11.23755 -10.86686 -10.57697 -10.35425 -9.35081 -9.18121 -8.22370 -6.32292 1.21789 1.37814 1.39343 1.51385 2.12605 2.24665 2.38640 3.11750 3.20939 3.74721 3.95782 4.02282 4.16847 4.22997 4.35557 4.47426 4.54314 4.60058 4.61254 4.70543 4.83636 4.89765 5.04767 5.10996 5.14225 5.17193 5.41173 5.45977 5.54156 5.67839 5.78735 5.87482 6.09545 6.23311 6.42102 6.51712 6.84470 7.19666 7.36889 8.89258 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.024429 B = 0.006243 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.906400 B = 4483.980963 C = 5018.915573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 C 0.160 3.840 4 H 0.063 0.937 5 N -0.682 5.682 6 C 0.089 3.911 7 C 0.038 3.962 8 C -0.544 4.544 9 H 0.052 0.948 10 C 0.007 3.993 11 N -0.927 5.927 12 Si 0.958 3.042 13 H -0.267 1.267 14 H -0.276 1.276 15 H -0.278 1.278 16 C -0.008 4.008 17 C -0.059 4.059 18 N -0.531 5.531 19 C 0.161 3.839 20 N -0.437 5.437 21 C 0.059 3.941 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.350 0.650 28 H 0.041 0.959 29 H 0.020 0.980 30 H -0.003 1.003 31 H 0.001 0.999 32 H 0.264 0.736 33 H 0.175 0.825 34 H 0.229 0.771 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.396 -12.200 -6.528 14.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C 0.049 3.951 4 H 0.081 0.919 5 N -0.315 5.315 6 C -0.040 4.040 7 C 0.001 3.999 8 C -0.583 4.583 9 H 0.071 0.929 10 C -0.191 4.191 11 N -0.567 5.567 12 Si 0.783 3.217 13 H -0.191 1.191 14 H -0.202 1.202 15 H -0.204 1.204 16 C -0.126 4.126 17 C -0.207 4.207 18 N -0.250 5.250 19 C -0.121 4.121 20 N -0.117 5.117 21 C -0.082 4.082 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.097 0.903 27 H 0.171 0.829 28 H 0.060 0.940 29 H 0.039 0.961 30 H 0.015 0.985 31 H 0.019 0.981 32 H 0.073 0.927 33 H 0.192 0.808 34 H 0.246 0.754 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.606 -12.155 -6.498 14.247 hybrid contribution -1.347 1.241 0.317 1.859 sum 2.259 -10.914 -6.182 12.745 Atomic orbital electron populations 1.21817 0.94386 1.02935 1.01921 1.21593 0.96524 0.93474 1.03058 1.20013 0.87004 0.96265 0.91833 0.91915 1.60475 1.38831 1.04686 1.27556 1.21737 0.98227 0.86353 0.97669 1.18868 0.95212 0.93580 0.92253 1.21615 1.49006 0.93486 0.94199 0.92941 1.25830 0.94765 1.03589 0.94935 1.70077 1.49877 1.37004 0.99703 0.85502 0.77922 0.79834 0.78418 1.19130 1.20160 1.20390 1.21438 0.93075 1.09960 0.88086 1.22235 0.89280 1.10826 0.98379 1.70188 1.19675 1.21457 1.13662 1.25470 0.90606 1.06309 0.89680 1.45316 1.06293 1.51731 1.08369 1.22534 1.05388 1.04609 0.75711 0.92503 0.92798 0.90740 0.91585 0.90317 0.82902 0.94008 0.96143 0.98508 0.98066 0.92720 0.80770 0.75433 0.89908 0.89412 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.62 71.98 0.69 -2.06 16 2 C -0.11 -2.24 5.50 30.59 0.17 -2.07 16 3 C 0.16 4.26 2.46 44.17 0.11 4.37 16 4 H 0.06 1.71 7.86 -2.39 -0.02 1.69 16 5 N -0.68 -21.07 3.38 -495.45 -1.67 -22.74 16 6 C 0.09 3.55 5.10 86.30 0.44 3.99 16 7 C 0.04 1.92 5.26 29.85 0.16 2.08 16 8 C -0.54 -30.42 9.11 25.60 0.23 -30.19 16 9 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 10 C 0.01 0.41 5.46 84.65 0.46 0.87 16 11 N -0.93 -54.71 13.29 21.45 0.28 -54.42 16 12 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 13 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 14 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 15 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 16 C -0.01 -0.23 5.67 40.95 0.23 0.01 16 17 C -0.06 -1.83 11.79 83.52 0.98 -0.84 16 18 N -0.53 -17.51 11.25 -200.30 -2.25 -19.76 16 19 C 0.16 4.59 12.55 180.26 2.26 6.85 16 20 N -0.44 -12.70 3.15 -537.87 -1.70 -14.39 16 21 C 0.06 1.54 10.69 127.77 1.37 2.91 16 22 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16 23 H 0.05 1.03 6.70 -2.38 -0.02 1.02 16 24 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.35 10.14 6.68 -89.69 -0.60 9.54 16 28 H 0.04 1.80 7.89 -2.39 -0.02 1.78 16 29 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.00 0.05 7.78 -2.39 -0.02 0.03 16 32 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 33 H 0.18 4.62 8.06 -2.91 -0.02 4.60 16 34 H 0.23 4.63 8.06 -2.91 -0.02 4.60 16 35 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.09 1.98 8.13 -2.38 -0.02 1.96 16 37 H 0.11 3.48 4.92 -2.39 -0.01 3.47 16 Total: -1.00 -65.45 304.26 4.24 -61.21 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.44 Total: 18.36 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 7.11 Total: -14.09 kcal Atomic # 7 Polarization: -105.98 SS G_CDS: -5.34 Total: -111.32 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -65.45 4.24 -61.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380339634.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.790 kcal (2) G-P(sol) polarization free energy of solvation -65.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds